Protein–RNA interactions for Protein: Q70EL1

USP54, Inactive ubiquitin carboxyl-terminal hydrolase 54, humanhuman

Predictions only

Length 1,684 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP54Q70EL1 AC107294.3-201ENST00000609211 526 ntBASIC3.07□□□□□ -1.92
USP54Q70EL1 AL136981.2-201ENST00000617319 734 ntBASIC3.07□□□□□ -1.92
USP54Q70EL1 AC009831.4-201ENST00000620744 325 ntBASIC3.07□□□□□ -1.92
USP54Q70EL1 FGF14-201ENST00000376131 12882 ntTSL 1 (best) BASIC3.07□□□□□ -1.92
USP54Q70EL1 AC002543.1-201ENST00000299783 1954 ntBASIC3.07□□□□□ -1.92
USP54Q70EL1 PYGO1-201ENST00000302000 8488 ntTSL 1 (best) BASIC3.06□□□□□ -1.92
USP54Q70EL1 SCEL-205ENST00000535157 3096 ntAPPRIS ALT2 TSL 2 BASIC3.06□□□□□ -1.92
USP54Q70EL1 PIK3CA-201ENST00000263967 9093 ntAPPRIS P1 TSL 2 BASIC3.06□□□□□ -1.92
USP54Q70EL1 AL390023.1-201ENST00000428836 262 ntBASIC3.06□□□□□ -1.92
USP54Q70EL1 Z98742.2-201ENST00000431564 187 ntBASIC3.06□□□□□ -1.92
USP54Q70EL1 LINC02269-201ENST00000509968 511 ntTSL 3 BASIC3.06□□□□□ -1.92
USP54Q70EL1 RN7SKP34-201ENST00000516142 244 ntBASIC3.06□□□□□ -1.92
USP54Q70EL1 VTA1P2-201ENST00000520205 911 ntBASIC3.06□□□□□ -1.92
USP54Q70EL1 TPMTP1-201ENST00000592307 737 ntBASIC3.06□□□□□ -1.92
USP54Q70EL1 NXPE1-204ENST00000536271 2289 ntTSL 1 (best) BASIC3.06□□□□□ -1.92
USP54Q70EL1 EYS-204ENST00000370621 10485 ntAPPRIS ALT2 TSL 1 (best) BASIC3.06□□□□□ -1.92
USP54Q70EL1 AC009502.1-203ENST00000416861 496 ntTSL 2 BASIC3.05□□□□□ -1.92
USP54Q70EL1 RPS24P8-201ENST00000431490 402 ntBASIC3.05□□□□□ -1.92
USP54Q70EL1 RPL36AP6-201ENST00000435770 321 ntBASIC3.05□□□□□ -1.92
USP54Q70EL1 GAPDHP27-201ENST00000447427 1020 ntBASIC3.05□□□□□ -1.92
USP54Q70EL1 MTCO3P11-201ENST00000455103 774 ntBASIC3.05□□□□□ -1.92
USP54Q70EL1 RPL23AP62-201ENST00000463396 453 ntBASIC3.05□□□□□ -1.92
USP54Q70EL1 AL049830.2-201ENST00000480072 201 ntBASIC3.05□□□□□ -1.92
USP54Q70EL1 RNU6-548P-201ENST00000517083 115 ntBASIC3.05□□□□□ -1.92
USP54Q70EL1 HMGB1P41-201ENST00000520234 440 ntBASIC3.05□□□□□ -1.92
USP54Q70EL1 AC007876.1-201ENST00000527562 983 ntTSL 1 (best) BASIC3.05□□□□□ -1.92
USP54Q70EL1 AC018630.1-201ENST00000541376 925 ntBASIC3.05□□□□□ -1.92
USP54Q70EL1 AC007688.2-201ENST00000545158 369 ntTSL 3 BASIC3.05□□□□□ -1.92
USP54Q70EL1 AL161751.1-201ENST00000555636 1044 ntTSL 5 BASIC3.05□□□□□ -1.92
USP54Q70EL1 AC007610.2-201ENST00000566770 666 ntTSL 3 BASIC3.05□□□□□ -1.92
USP54Q70EL1 AC016727.1-205ENST00000605437 569 ntBASIC3.05□□□□□ -1.92
USP54Q70EL1 AC003984.1-201ENST00000450977 4104 ntTSL 1 (best) BASIC3.05□□□□□ -1.92
USP54Q70EL1 GAPT-201ENST00000318469 2119 ntAPPRIS P1 BASIC3.05□□□□□ -1.92
USP54Q70EL1 Y_RNA.226-201ENST00000364337 114 ntBASIC3.04□□□□□ -1.92
USP54Q70EL1 Y_RNA.238-201ENST00000364441 102 ntBASIC3.04□□□□□ -1.92
USP54Q70EL1 AC092427.1-202ENST00000430569 476 ntBASIC3.04□□□□□ -1.92
USP54Q70EL1 AC243772.1-201ENST00000451620 410 ntBASIC3.04□□□□□ -1.92
USP54Q70EL1 LINC01825-201ENST00000452381 850 ntTSL 3 BASIC3.04□□□□□ -1.92
USP54Q70EL1 AC025181.1-201ENST00000477507 416 ntBASIC3.04□□□□□ -1.92
USP54Q70EL1 AC104827.1-202ENST00000511917 1049 ntTSL 1 (best) BASIC3.04□□□□□ -1.92
USP54Q70EL1 AL121839.1-201ENST00000556233 1185 ntBASIC3.04□□□□□ -1.92
USP54Q70EL1 AC023813.4-201ENST00000607580 580 ntBASIC3.04□□□□□ -1.92
USP54Q70EL1 AC002076.2-201ENST00000617362 122 ntBASIC3.04□□□□□ -1.92
USP54Q70EL1 AL160394.1-201ENST00000624765 724 ntBASIC3.04□□□□□ -1.92
USP54Q70EL1 METTL18-201ENST00000303469 1426 ntAPPRIS P1 TSL 1 (best) BASIC3.04□□□□□ -1.92
USP54Q70EL1 ATP8A2P3-201ENST00000426792 1536 ntBASIC3.04□□□□□ -1.92
USP54Q70EL1 OR4G2P-202ENST00000641004 1759 ntBASIC3.04□□□□□ -1.92
USP54Q70EL1 CHD9-202ENST00000398510 11337 ntTSL 1 (best) BASIC3.04□□□□□ -1.92
USP54Q70EL1 OR52E2-201ENST00000321522 978 ntAPPRIS P1 BASIC3.04□□□□□ -1.92
USP54Q70EL1 GSTA9P-201ENST00000406231 611 ntBASIC3.04□□□□□ -1.92
USP54Q70EL1 MUPP-201ENST00000438111 566 ntBASIC3.04□□□□□ -1.92
USP54Q70EL1 AL354710.1-201ENST00000453641 246 ntBASIC3.04□□□□□ -1.92
USP54Q70EL1 AC108860.1-201ENST00000484521 383 ntBASIC3.04□□□□□ -1.92
USP54Q70EL1 ODF2L-216ENST00000486215 311 ntTSL 2 BASIC3.04□□□□□ -1.92
USP54Q70EL1 RNA5SP200-201ENST00000516360 103 ntBASIC3.04□□□□□ -1.92
USP54Q70EL1 HIGD1AP10-201ENST00000527837 282 ntBASIC3.04□□□□□ -1.92
USP54Q70EL1 CACNA1C-IT2-201ENST00000541871 589 ntTSL 2 BASIC3.04□□□□□ -1.92
USP54Q70EL1 LINC01481-201ENST00000552998 629 ntTSL 2 BASIC3.04□□□□□ -1.92
USP54Q70EL1 AP005671.1-201ENST00000581798 463 ntTSL 3 BASIC3.04□□□□□ -1.92
USP54Q70EL1 AC103710.3-201ENST00000608157 948 ntBASIC3.04□□□□□ -1.92
USP54Q70EL1 MIR6845-201ENST00000613182 61 ntBASIC3.04□□□□□ -1.92
USP54Q70EL1 MIR7111-201ENST00000619751 72 ntBASIC3.04□□□□□ -1.92
USP54Q70EL1 FER-201ENST00000281092 12119 ntAPPRIS P1 TSL 1 (best) BASIC3.03□□□□□ -1.92
USP54Q70EL1 ANKRD62P1-201ENST00000434304 1623 ntBASIC3.03□□□□□ -1.92
USP54Q70EL1 AC097714.1-201ENST00000511272 1647 ntBASIC3.03□□□□□ -1.92
USP54Q70EL1 DPY19L2P1-203ENST00000458672 3347 ntTSL 1 (best) BASIC3.03□□□□□ -1.92
USP54Q70EL1 TAB2-205ENST00000538427 4240 ntAPPRIS P1 TSL 5 BASIC3.03□□□□□ -1.92
USP54Q70EL1 OR8K3-204ENST00000641689 2380 ntAPPRIS P1 BASIC3.03□□□□□ -1.92
USP54Q70EL1 AL023284.1-201ENST00000403956 276 ntBASIC3.03□□□□□ -1.92
USP54Q70EL1 AC107081.1-201ENST00000414975 361 ntBASIC3.03□□□□□ -1.92
USP54Q70EL1 AL354733.1-203ENST00000417672 495 ntTSL 5 BASIC3.03□□□□□ -1.92
USP54Q70EL1 PTP4A1P7-201ENST00000423476 514 ntBASIC3.03□□□□□ -1.92
USP54Q70EL1 LAMTOR5P1-201ENST00000444290 270 ntBASIC3.03□□□□□ -1.92
USP54Q70EL1 AL365204.2-201ENST00000446754 687 ntTSL 2 BASIC3.03□□□□□ -1.92
USP54Q70EL1 LINC02465-201ENST00000507099 532 ntTSL 4 BASIC3.03□□□□□ -1.92
USP54Q70EL1 SCARNA16.3-201ENST00000516595 184 ntBASIC3.03□□□□□ -1.92
USP54Q70EL1 AC018616.1-201ENST00000524085 546 ntTSL 5 BASIC3.03□□□□□ -1.92
USP54Q70EL1 OR11H5P-201ENST00000554039 926 ntBASIC3.03□□□□□ -1.92
USP54Q70EL1 AC105137.2-201ENST00000569073 466 ntBASIC3.03□□□□□ -1.92
USP54Q70EL1 MIR6873-201ENST00000622788 63 ntBASIC3.03□□□□□ -1.92
USP54Q70EL1 ZNF117-203ENST00000610793 1374 ntTSL 2 BASIC3.03□□□□□ -1.92
USP54Q70EL1 MUC19-205ENST00000454784 24775 ntTSL 5 BASIC3.03□□□□□ -1.92
USP54Q70EL1 BX005019.1-201ENST00000561881 1810 ntBASIC3.03□□□□□ -1.93
USP54Q70EL1 AC008432.1-201ENST00000615912 1320 ntBASIC3.03□□□□□ -1.93
USP54Q70EL1 TEX9-207ENST00000560582 2005 ntTSL 3 BASIC3.02□□□□□ -1.93
USP54Q70EL1 PI15-201ENST00000260113 6732 ntAPPRIS P1 TSL 1 (best) BASIC3.02□□□□□ -1.93
USP54Q70EL1 XIAPP3-201ENST00000312918 795 ntBASIC3.02□□□□□ -1.93
USP54Q70EL1 PPP3R1-202ENST00000409377 684 ntTSL 3 BASIC3.02□□□□□ -1.93
USP54Q70EL1 RNU2-2P-201ENST00000410396 191 ntBASIC3.02□□□□□ -1.93
USP54Q70EL1 MORF4L1P6-201ENST00000418771 268 ntBASIC3.02□□□□□ -1.93
USP54Q70EL1 AC010745.4-201ENST00000420130 740 ntTSL 5 BASIC3.02□□□□□ -1.93
USP54Q70EL1 AL078601.2-201ENST00000429444 474 ntTSL 2 BASIC3.02□□□□□ -1.93
USP54Q70EL1 AC115618.2-201ENST00000453810 450 ntTSL 3 BASIC3.02□□□□□ -1.93
USP54Q70EL1 CEACAMP4-201ENST00000457676 421 ntBASIC3.02□□□□□ -1.93
USP54Q70EL1 EMP1-206ENST00000537612 505 ntTSL 3 BASIC3.02□□□□□ -1.93
USP54Q70EL1 AC092326.1-201ENST00000567465 674 ntTSL 3 BASIC3.02□□□□□ -1.93
USP54Q70EL1 BNIP3P8-201ENST00000597863 560 ntBASIC3.02□□□□□ -1.93
USP54Q70EL1 AC103710.1-201ENST00000610003 901 ntBASIC3.02□□□□□ -1.93
USP54Q70EL1 U2.15-201ENST00000611544 191 ntBASIC3.02□□□□□ -1.93
USP54Q70EL1 U2.16-201ENST00000613119 191 ntBASIC3.02□□□□□ -1.93
Retrieved 100 of 98,524 protein–RNA pairs in 98.7 ms