Protein–RNA interactions for Protein: Q68DE3

USF3, Basic helix-loop-helix domain-containing protein USF3, humanhuman

Predictions only

Length 2,245 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USF3Q68DE3 AC010198.2-201ENST00000550612 259 ntBASIC1.99□□□□□ -2.09
USF3Q68DE3 AC110994.2-201ENST00000635481 492 ntBASIC1.99□□□□□ -2.09
USF3Q68DE3 AC107021.2-201ENST00000567714 2095 ntBASIC1.99□□□□□ -2.09
USF3Q68DE3 ZNF72P-201ENST00000425869 1908 ntBASIC1.99□□□□□ -2.09
USF3Q68DE3 OR4G2P-202ENST00000641004 1759 ntBASIC1.99□□□□□ -2.09
USF3Q68DE3 ZNF107-203ENST00000395391 6094 ntTSL 1 (best) BASIC1.99□□□□□ -2.09
USF3Q68DE3 FBXL13-204ENST00000436908 2577 ntTSL 5 BASIC1.99□□□□□ -2.09
USF3Q68DE3 OR51A7-202ENST00000641490 2186 ntAPPRIS P1 BASIC1.99□□□□□ -2.09
USF3Q68DE3 MIR21-201ENST00000362134 72 ntBASIC1.99□□□□□ -2.09
USF3Q68DE3 RPL31P45-201ENST00000419532 356 ntBASIC1.99□□□□□ -2.09
USF3Q68DE3 USP9YP7-201ENST00000436723 430 ntBASIC1.99□□□□□ -2.09
USF3Q68DE3 GYPE-202ENST00000437468 499 ntAPPRIS P1 TSL 1 (best) BASIC1.99□□□□□ -2.09
USF3Q68DE3 AC012355.1-201ENST00000450290 769 ntTSL 3 BASIC1.99□□□□□ -2.09
USF3Q68DE3 USP9YP32-201ENST00000452432 430 ntBASIC1.99□□□□□ -2.09
USF3Q68DE3 AP002833.1-201ENST00000530572 566 ntTSL 3 BASIC1.99□□□□□ -2.09
USF3Q68DE3 AC107031.1-201ENST00000604939 347 ntTSL 2 BASIC1.99□□□□□ -2.09
USF3Q68DE3 AC017076.1-201ENST00000607613 578 ntBASIC1.99□□□□□ -2.09
USF3Q68DE3 NF1P10-201ENST00000613227 742 ntBASIC1.99□□□□□ -2.09
USF3Q68DE3 AC004696.1-201ENST00000614345 607 ntBASIC1.99□□□□□ -2.09
USF3Q68DE3 ATP13A5-205ENST00000620313 709 ntTSL 5 BASIC1.99□□□□□ -2.09
USF3Q68DE3 SLC25A46-208ENST00000513807 1546 ntTSL 2 BASIC1.99□□□□□ -2.09
USF3Q68DE3 AC022031.1-201ENST00000585985 2593 ntBASIC1.99□□□□□ -2.09
USF3Q68DE3 FILIP1L-209ENST00000487087 2321 ntTSL 5 BASIC1.99□□□□□ -2.09
USF3Q68DE3 AC117529.2-201ENST00000512159 2068 ntBASIC1.99□□□□□ -2.09
USF3Q68DE3 CCSAP-202ENST00000366686 4399 ntTSL 2 BASIC1.99□□□□□ -2.09
USF3Q68DE3 RNU1-91P-201ENST00000364746 163 ntBASIC1.98□□□□□ -2.09
USF3Q68DE3 KLRC2-201ENST00000381901 1211 ntAPPRIS ALT2 TSL 5 BASIC1.98□□□□□ -2.09
USF3Q68DE3 SAR1AP2-201ENST00000392696 594 ntBASIC1.98□□□□□ -2.09
USF3Q68DE3 AL024474.1-201ENST00000404655 591 ntBASIC1.98□□□□□ -2.09
USF3Q68DE3 VTA1P1-201ENST00000414044 866 ntBASIC1.98□□□□□ -2.09
USF3Q68DE3 RPL39P40-201ENST00000445481 146 ntBASIC1.98□□□□□ -2.09
USF3Q68DE3 HMGB1P15-201ENST00000453854 435 ntBASIC1.98□□□□□ -2.09
USF3Q68DE3 SAR1B-211ENST00000509937 455 ntTSL 5 BASIC1.98□□□□□ -2.09
USF3Q68DE3 RPS27AP18-201ENST00000515536 459 ntBASIC1.98□□□□□ -2.09
USF3Q68DE3 AC023442.2-201ENST00000526455 270 ntTSL 3 BASIC1.98□□□□□ -2.09
USF3Q68DE3 ABI1P1-201ENST00000603375 1120 ntBASIC1.98□□□□□ -2.09
USF3Q68DE3 KLRC2-206ENST00000619500 883 ntTSL 5 BASIC1.98□□□□□ -2.09
USF3Q68DE3 AC092184.1-201ENST00000625042 715 ntBASIC1.98□□□□□ -2.09
USF3Q68DE3 FGF7-206ENST00000614567 3936 ntAPPRIS P1 TSL 1 (best) BASIC1.98□□□□□ -2.09
USF3Q68DE3 ERBIN-212ENST00000508515 4374 ntTSL 5 BASIC1.98□□□□□ -2.09
USF3Q68DE3 AASDH-207ENST00000513376 3241 ntTSL 1 (best) BASIC1.98□□□□□ -2.09
USF3Q68DE3 SAGE4P-201ENST00000442271 3381 ntBASIC1.98□□□□□ -2.09
USF3Q68DE3 OFD1P6Y-201ENST00000432335 1637 ntTSL 2 BASIC1.98□□□□□ -2.09
USF3Q68DE3 TTTY9B-201ENST00000433794 1637 ntTSL 2 BASIC1.98□□□□□ -2.09
USF3Q68DE3 HSFY1-202ENST00000309834 1038 ntAPPRIS ALT2 TSL 1 (best) BASIC1.98□□□□□ -2.09
USF3Q68DE3 HSFY2-202ENST00000344884 1038 ntAPPRIS ALT2 TSL 1 (best) BASIC1.98□□□□□ -2.09
USF3Q68DE3 AL161781.1-201ENST00000354277 403 ntBASIC1.98□□□□□ -2.09
USF3Q68DE3 MIR142-201ENST00000384835 87 ntBASIC1.98□□□□□ -2.09
USF3Q68DE3 BTBD10P2-201ENST00000404779 676 ntBASIC1.98□□□□□ -2.09
USF3Q68DE3 AL354733.1-203ENST00000417672 495 ntTSL 5 BASIC1.98□□□□□ -2.09
USF3Q68DE3 AL031736.2-201ENST00000426573 787 ntBASIC1.98□□□□□ -2.09
USF3Q68DE3 RPL23AP49-201ENST00000492925 468 ntBASIC1.98□□□□□ -2.09
USF3Q68DE3 RNU6-1334P-201ENST00000516032 105 ntBASIC1.98□□□□□ -2.09
USF3Q68DE3 SEC11B-201ENST00000518383 499 ntBASIC1.98□□□□□ -2.09
USF3Q68DE3 C11orf1-204ENST00000530214 599 ntTSL 5 BASIC1.98□□□□□ -2.09
USF3Q68DE3 AP003170.4-201ENST00000543486 586 ntTSL 3 BASIC1.98□□□□□ -2.09
USF3Q68DE3 AL161751.1-201ENST00000555636 1044 ntTSL 5 BASIC1.98□□□□□ -2.09
USF3Q68DE3 AC091488.1-201ENST00000604239 660 ntBASIC1.98□□□□□ -2.09
USF3Q68DE3 AC010680.4-201ENST00000605334 543 ntBASIC1.98□□□□□ -2.09
USF3Q68DE3 Clostridiales-1.2-201ENST00000636724 160 ntBASIC1.98□□□□□ -2.09
USF3Q68DE3 ATP8A2P3-201ENST00000426792 1536 ntBASIC1.97□□□□□ -2.09
USF3Q68DE3 MIER3-204ENST00000381226 5210 ntAPPRIS ALT1 TSL 1 (best) BASIC1.97□□□□□ -2.09
USF3Q68DE3 AL023284.1-201ENST00000403956 276 ntBASIC1.97□□□□□ -2.09
USF3Q68DE3 AC009502.1-203ENST00000416861 496 ntTSL 2 BASIC1.97□□□□□ -2.09
USF3Q68DE3 AL137789.1-201ENST00000439443 682 ntTSL 3 BASIC1.97□□□□□ -2.09
USF3Q68DE3 AC099677.4-201ENST00000446786 380 ntTSL 3 BASIC1.97□□□□□ -2.09
USF3Q68DE3 MTCO3P11-201ENST00000455103 774 ntBASIC1.97□□□□□ -2.09
USF3Q68DE3 RPL30P9-201ENST00000465586 330 ntBASIC1.97□□□□□ -2.09
USF3Q68DE3 AC092436.1-201ENST00000506450 503 ntBASIC1.97□□□□□ -2.09
USF3Q68DE3 RNA5SP402-201ENST00000517148 110 ntBASIC1.97□□□□□ -2.09
USF3Q68DE3 AC025881.1-201ENST00000518851 512 ntBASIC1.97□□□□□ -2.09
USF3Q68DE3 OR4R2P-201ENST00000530815 597 ntBASIC1.97□□□□□ -2.09
USF3Q68DE3 AP001363.1-201ENST00000544108 264 ntTSL 3 BASIC1.97□□□□□ -2.09
USF3Q68DE3 NRBF2P1-201ENST00000587407 859 ntBASIC1.97□□□□□ -2.09
USF3Q68DE3 INTS6-AS1-210ENST00000595424 301 ntTSL 5 BASIC1.97□□□□□ -2.09
USF3Q68DE3 ALG6-201ENST00000263440 1895 ntAPPRIS ALT1 TSL 5 BASIC1.97□□□□□ -2.09
USF3Q68DE3 RNU6-1159P-201ENST00000362933 107 ntBASIC1.97□□□□□ -2.09
USF3Q68DE3 CFHR4-203ENST00000367418 1066 ntTSL 1 (best) BASIC1.97□□□□□ -2.09
USF3Q68DE3 MAL2-205ENST00000521048 575 ntTSL 4 BASIC1.97□□□□□ -2.09
USF3Q68DE3 RANP3-201ENST00000530970 276 ntBASIC1.97□□□□□ -2.09
USF3Q68DE3 EMP1-206ENST00000537612 505 ntTSL 3 BASIC1.97□□□□□ -2.09
USF3Q68DE3 AADACP1-206ENST00000561502 1193 ntBASIC1.97□□□□□ -2.09
USF3Q68DE3 AC009093.3-203ENST00000565800 121 ntTSL 2 BASIC1.97□□□□□ -2.09
USF3Q68DE3 AL645944.1-201ENST00000603857 493 ntBASIC1.97□□□□□ -2.09
USF3Q68DE3 AC067747.1-201ENST00000608026 250 ntBASIC1.97□□□□□ -2.09
USF3Q68DE3 AL137847.3-201ENST00000611521 109 ntBASIC1.97□□□□□ -2.09
USF3Q68DE3 CR589904.2-201ENST00000612533 440 ntBASIC1.97□□□□□ -2.09
USF3Q68DE3 RFC1-217ENST00000639695 867 ntTSL 5 BASIC1.97□□□□□ -2.09
USF3Q68DE3 WDFY3-AS2-202ENST00000451762 5814 ntTSL 3 BASIC1.97□□□□□ -2.09
USF3Q68DE3 PHKBP1-201ENST00000450951 1951 ntBASIC1.96□□□□□ -2.09
USF3Q68DE3 IL6ST-201ENST00000336909 8776 ntAPPRIS P1 TSL 2 BASIC1.96□□□□□ -2.1
USF3Q68DE3 AC010329.2-201ENST00000595195 2737 ntBASIC1.96□□□□□ -2.1
USF3Q68DE3 Y_RNA.226-201ENST00000364337 114 ntBASIC1.96□□□□□ -2.1
USF3Q68DE3 SNORA64-201ENST00000384674 134 ntBASIC1.96□□□□□ -2.1
USF3Q68DE3 RN7SKP140-201ENST00000411196 284 ntBASIC1.96□□□□□ -2.1
USF3Q68DE3 RBMS3-AS1-201ENST00000414547 554 ntTSL 4 BASIC1.96□□□□□ -2.1
USF3Q68DE3 RPL7P52-201ENST00000449200 742 ntBASIC1.96□□□□□ -2.1
USF3Q68DE3 IGHVIII-5-1-201ENST00000523059 99 ntBASIC1.96□□□□□ -2.1
USF3Q68DE3 AC018410.2-201ENST00000540410 610 ntTSL 5 BASIC1.96□□□□□ -2.1
USF3Q68DE3 LINC02448-201ENST00000548613 583 ntTSL 2 BASIC1.96□□□□□ -2.1
Retrieved 100 of 98,524 protein–RNA pairs in 116.1 ms