Protein–RNA interactions for Protein: Q53GG5

PDLIM3, PDZ and LIM domain protein 3, humanhuman

Predicted RBP Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3Q53GG5 AC110768.1-201ENST00000509222 400 ntBASIC3.5□□□□□ -1.85
PDLIM3Q53GG5 AC110751.1-201ENST00000511916 462 ntTSL 3 BASIC3.5□□□□□ -1.85
PDLIM3Q53GG5 RNU4ATAC10P-201ENST00000516967 122 ntBASIC3.5□□□□□ -1.85
PDLIM3Q53GG5 MS4A13-204ENST00000527948 790 ntTSL 1 (best) BASIC3.5□□□□□ -1.85
PDLIM3Q53GG5 OR4P1P-201ENST00000530808 1136 ntBASIC3.5□□□□□ -1.85
PDLIM3Q53GG5 AC022367.1-202ENST00000535066 537 ntTSL 3 BASIC3.5□□□□□ -1.85
PDLIM3Q53GG5 AC106028.2-201ENST00000555325 464 ntTSL 4 BASIC3.5□□□□□ -1.85
PDLIM3Q53GG5 AC012146.1-204ENST00000570712 426 ntTSL 3 BASIC3.5□□□□□ -1.85
PDLIM3Q53GG5 MIR3690-201ENST00000580266 75 ntBASIC3.5□□□□□ -1.85
PDLIM3Q53GG5 ZNF562-205ENST00000587392 583 ntTSL 2 BASIC3.5□□□□□ -1.85
PDLIM3Q53GG5 Z94722.1-201ENST00000604328 474 ntBASIC3.5□□□□□ -1.85
PDLIM3Q53GG5 AC010738.1-201ENST00000604970 987 ntBASIC3.5□□□□□ -1.85
PDLIM3Q53GG5 AC018714.1-201ENST00000605028 208 ntBASIC3.5□□□□□ -1.85
PDLIM3Q53GG5 LINC00993-204ENST00000606476 500 ntTSL 5 BASIC3.5□□□□□ -1.85
PDLIM3Q53GG5 AC092636.1-201ENST00000608609 415 ntTSL 2 BASIC3.5□□□□□ -1.85
PDLIM3Q53GG5 AC019176.2-201ENST00000611579 315 ntBASIC3.5□□□□□ -1.85
PDLIM3Q53GG5 AC122133.1-201ENST00000613964 233 ntBASIC3.5□□□□□ -1.85
PDLIM3Q53GG5 ST7-OT4_4.1-201ENST00000614993 213 ntBASIC3.5□□□□□ -1.85
PDLIM3Q53GG5 AC073968.1-201ENST00000618594 637 ntBASIC3.5□□□□□ -1.85
PDLIM3Q53GG5 AL031667.3-201ENST00000620124 655 ntBASIC3.5□□□□□ -1.85
PDLIM3Q53GG5 RMDN2-AS1-204ENST00000626669 448 ntTSL 5 BASIC3.5□□□□□ -1.85
PDLIM3Q53GG5 AC011139.1-202ENST00000637744 563 ntTSL 5 BASIC3.5□□□□□ -1.85
PDLIM3Q53GG5 CEP152-203ENST00000399334 5097 ntAPPRIS P3 TSL 1 (best) BASIC3.5□□□□□ -1.85
PDLIM3Q53GG5 AL022578.1-201ENST00000439330 1433 ntBASIC3.5□□□□□ -1.85
PDLIM3Q53GG5 OR5M3-202ENST00000641993 1400 ntAPPRIS P1 BASIC3.5□□□□□ -1.85
PDLIM3Q53GG5 LINC00907-209ENST00000593234 3376 ntTSL 1 (best) BASIC3.5□□□□□ -1.85
PDLIM3Q53GG5 LINC02471-203ENST00000641941 4752 ntBASIC3.5□□□□□ -1.85
PDLIM3Q53GG5 WDR49-201ENST00000308378 2594 ntAPPRIS P2 TSL 1 (best) BASIC3.5□□□□□ -1.85
PDLIM3Q53GG5 AC016588.2-201ENST00000632484 3021 ntBASIC3.49□□□□□ -1.85
PDLIM3Q53GG5 GPR34-201ENST00000378138 1815 ntAPPRIS P1 TSL 1 (best) BASIC3.49□□□□□ -1.85
PDLIM3Q53GG5 MGA-211ENST00000570161 11859 ntAPPRIS P4 TSL 5 BASIC3.49□□□□□ -1.85
PDLIM3Q53GG5 ARPP19-211ENST00000568196 1489 ntTSL 2 BASIC3.49□□□□□ -1.85
PDLIM3Q53GG5 CUL2-201ENST00000374746 3903 ntTSL 5 BASIC3.49□□□□□ -1.85
PDLIM3Q53GG5 CXCL10-201ENST00000306602 1176 ntAPPRIS P1 TSL 1 (best) BASIC3.49□□□□□ -1.85
PDLIM3Q53GG5 OR51F2-201ENST00000322110 993 ntAPPRIS ALT2 BASIC3.49□□□□□ -1.85
PDLIM3Q53GG5 RPL21P132-201ENST00000331267 462 ntBASIC3.49□□□□□ -1.85
PDLIM3Q53GG5 MIR383-201ENST00000362257 73 ntBASIC3.49□□□□□ -1.85
PDLIM3Q53GG5 RNA5SP119-201ENST00000362715 117 ntBASIC3.49□□□□□ -1.85
PDLIM3Q53GG5 TMCO2-201ENST00000372766 739 ntAPPRIS P1 TSL 1 (best) BASIC3.49□□□□□ -1.85
PDLIM3Q53GG5 IGLV5-37-201ENST00000390300 374 ntAPPRIS P1 BASIC3.49□□□□□ -1.85
PDLIM3Q53GG5 RNU6-837P-201ENST00000391056 108 ntBASIC3.49□□□□□ -1.85
PDLIM3Q53GG5 SNORD66.1-201ENST00000391230 76 ntBASIC3.49□□□□□ -1.85
PDLIM3Q53GG5 AL589642.2-201ENST00000413291 839 ntTSL 3 BASIC3.49□□□□□ -1.85
PDLIM3Q53GG5 AL024509.3-201ENST00000413898 745 ntTSL 1 (best) BASIC3.49□□□□□ -1.85
PDLIM3Q53GG5 AL365203.2-201ENST00000423444 196 ntBASIC3.49□□□□□ -1.85
PDLIM3Q53GG5 AL445567.1-201ENST00000439121 144 ntBASIC3.49□□□□□ -1.85
PDLIM3Q53GG5 AC010235.1-201ENST00000450613 547 ntTSL 3 BASIC3.49□□□□□ -1.85
PDLIM3Q53GG5 ZNF736P5Y-201ENST00000451173 805 ntBASIC3.49□□□□□ -1.85
PDLIM3Q53GG5 RNU7-136P-201ENST00000458819 69 ntBASIC3.49□□□□□ -1.85
PDLIM3Q53GG5 AC053481.1-201ENST00000467217 306 ntBASIC3.49□□□□□ -1.85
PDLIM3Q53GG5 VN1R17P-201ENST00000472048 1090 ntBASIC3.49□□□□□ -1.85
PDLIM3Q53GG5 RPS3AP43-201ENST00000479743 781 ntBASIC3.49□□□□□ -1.85
PDLIM3Q53GG5 AC084117.1-201ENST00000496975 270 ntTSL 5 BASIC3.49□□□□□ -1.85
PDLIM3Q53GG5 ACTR3BP4-201ENST00000503033 1244 ntBASIC3.49□□□□□ -1.85
PDLIM3Q53GG5 EGFLAM-AS2-201ENST00000512603 466 ntTSL 5 BASIC3.49□□□□□ -1.85
PDLIM3Q53GG5 AC093879.2-201ENST00000513645 427 ntTSL 3 BASIC3.49□□□□□ -1.85
PDLIM3Q53GG5 AC106744.2-201ENST00000513955 898 ntTSL 5 BASIC3.49□□□□□ -1.85
PDLIM3Q53GG5 LINC02014-201ENST00000514010 713 ntTSL 3 BASIC3.49□□□□□ -1.85
PDLIM3Q53GG5 AC106895.1-201ENST00000515825 548 ntTSL 4 BASIC3.49□□□□□ -1.85
PDLIM3Q53GG5 RNU6-678P-201ENST00000516832 109 ntBASIC3.49□□□□□ -1.85
PDLIM3Q53GG5 TRIQK-209ENST00000519969 555 ntAPPRIS P1 TSL 4 BASIC3.49□□□□□ -1.85
PDLIM3Q53GG5 AP003170.4-201ENST00000543486 586 ntTSL 3 BASIC3.49□□□□□ -1.85
PDLIM3Q53GG5 LINC01479-202ENST00000546170 444 ntTSL 2 BASIC3.49□□□□□ -1.85
PDLIM3Q53GG5 AC090503.2-201ENST00000551135 981 ntTSL 3 BASIC3.49□□□□□ -1.85
PDLIM3Q53GG5 AC107954.1-201ENST00000565906 727 ntBASIC3.49□□□□□ -1.85
PDLIM3Q53GG5 AC013565.1-201ENST00000565938 597 ntTSL 2 BASIC3.49□□□□□ -1.85
PDLIM3Q53GG5 AC053481.4-201ENST00000583164 216 ntBASIC3.49□□□□□ -1.85
PDLIM3Q53GG5 AC090409.2-202ENST00000585706 604 ntTSL 5 BASIC3.49□□□□□ -1.85
PDLIM3Q53GG5 AL355376.2-201ENST00000603866 267 ntTSL 5 BASIC3.49□□□□□ -1.85
PDLIM3Q53GG5 SNORA51-201ENST00000606420 132 ntBASIC3.49□□□□□ -1.85
PDLIM3Q53GG5 AC020634.1-201ENST00000608701 549 ntBASIC3.49□□□□□ -1.85
PDLIM3Q53GG5 AC072039.2-201ENST00000608883 439 ntBASIC3.49□□□□□ -1.85
PDLIM3Q53GG5 AC103710.4-201ENST00000609301 899 ntBASIC3.49□□□□□ -1.85
PDLIM3Q53GG5 MIR6875-201ENST00000617506 72 ntBASIC3.49□□□□□ -1.85
PDLIM3Q53GG5 MIR7702-201ENST00000621931 59 ntBASIC3.49□□□□□ -1.85
PDLIM3Q53GG5 AC079248.2-201ENST00000623779 326 ntBASIC3.49□□□□□ -1.85
PDLIM3Q53GG5 SCARNA15.3-201ENST00000626315 122 ntBASIC3.49□□□□□ -1.85
PDLIM3Q53GG5 SCARNA4.1-201ENST00000628597 123 ntBASIC3.49□□□□□ -1.85
PDLIM3Q53GG5 LINC01709-202ENST00000635702 1204 ntTSL 5 BASIC3.49□□□□□ -1.85
PDLIM3Q53GG5 NPFFR2-203ENST00000358749 1559 ntAPPRIS P1 TSL 1 (best) BASIC3.49□□□□□ -1.85
PDLIM3Q53GG5 AC012321.1-201ENST00000561622 1588 ntBASIC3.49□□□□□ -1.85
PDLIM3Q53GG5 MAPK10-253ENST00000641010 4072 ntBASIC3.49□□□□□ -1.85
PDLIM3Q53GG5 MTND4P16-201ENST00000466108 1367 ntBASIC3.49□□□□□ -1.85
PDLIM3Q53GG5 MTND4P34-201ENST00000572715 1371 ntBASIC3.49□□□□□ -1.85
PDLIM3Q53GG5 ABCA12-202ENST00000389661 7005 ntTSL 1 (best) BASIC3.49□□□□□ -1.85
PDLIM3Q53GG5 ZNF734P-201ENST00000419494 1534 ntBASIC3.49□□□□□ -1.85
PDLIM3Q53GG5 WNK3-205ENST00000620763 5400 ntTSL 5 BASIC3.49□□□□□ -1.85
PDLIM3Q53GG5 SYCP1-210ENST00000618516 3109 ntAPPRIS P1 TSL 1 (best) BASIC3.48□□□□□ -1.85
PDLIM3Q53GG5 ETV1-202ENST00000399357 6096 ntTSL 2 BASIC3.48□□□□□ -1.85
PDLIM3Q53GG5 ANKRD62P1-201ENST00000434304 1623 ntBASIC3.48□□□□□ -1.85
PDLIM3Q53GG5 MYOT-202ENST00000421631 1474 ntTSL 2 BASIC3.48□□□□□ -1.85
PDLIM3Q53GG5 GCSAML-203ENST00000366491 4130 ntAPPRIS ALT2 TSL 2 BASIC3.48□□□□□ -1.85
PDLIM3Q53GG5 KIFAP3-202ENST00000367765 4111 ntTSL 2 BASIC3.48□□□□□ -1.85
PDLIM3Q53GG5 GDI2P1-201ENST00000429312 1336 ntBASIC3.48□□□□□ -1.85
PDLIM3Q53GG5 ZNF736P9Y-201ENST00000439586 1345 ntBASIC3.48□□□□□ -1.85
PDLIM3Q53GG5 OTUD4P1-201ENST00000237841 3067 ntBASIC3.48□□□□□ -1.85
PDLIM3Q53GG5 FMO2-201ENST00000209929 3851 ntAPPRIS P1 TSL 1 (best) BASIC3.48□□□□□ -1.85
PDLIM3Q53GG5 MLH1-212ENST00000455445 2296 ntTSL 2 BASIC3.48□□□□□ -1.85
PDLIM3Q53GG5 CFHR4-201ENST00000251424 1292 ntTSL 1 (best) BASIC3.48□□□□□ -1.85
PDLIM3Q53GG5 RNU6-777P-201ENST00000364265 104 ntBASIC3.48□□□□□ -1.85
Retrieved 100 of 98,524 protein–RNA pairs in 11.2 ms