Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 WFDC11-203ENST00000618797 561 ntAPPRIS P1 TSL 5 BASIC3.03□□□□□ -1.93
CCDC88AQ3V6T2 RFC1-217ENST00000639695 867 ntTSL 5 BASIC3.03□□□□□ -1.93
CCDC88AQ3V6T2 OXR1-209ENST00000517566 4501 ntTSL 1 (best) BASIC3.02□□□□□ -1.93
CCDC88AQ3V6T2 SNORA17.3-201ENST00000391159 129 ntBASIC3.02□□□□□ -1.93
CCDC88AQ3V6T2 RPS3AP26-201ENST00000398259 784 ntBASIC3.02□□□□□ -1.93
CCDC88AQ3V6T2 RN7SKP32-201ENST00000410167 303 ntBASIC3.02□□□□□ -1.93
CCDC88AQ3V6T2 RPL7P53-201ENST00000421245 739 ntBASIC3.02□□□□□ -1.93
CCDC88AQ3V6T2 AC099060.1-201ENST00000427806 448 ntTSL 3 BASIC3.02□□□□□ -1.93
CCDC88AQ3V6T2 MIR99AHG-205ENST00000435697 716 ntTSL 2 BASIC3.02□□□□□ -1.93
CCDC88AQ3V6T2 AL137789.1-201ENST00000439443 682 ntTSL 3 BASIC3.02□□□□□ -1.93
CCDC88AQ3V6T2 LINC01317-202ENST00000442026 677 ntTSL 3 BASIC3.02□□□□□ -1.93
CCDC88AQ3V6T2 ENSA-210ENST00000503241 574 ntTSL 3 BASIC3.02□□□□□ -1.93
CCDC88AQ3V6T2 NRG1-IT3-201ENST00000519023 505 ntTSL 3 BASIC3.02□□□□□ -1.93
CCDC88AQ3V6T2 AC090953.1-201ENST00000604305 1092 ntBASIC3.02□□□□□ -1.93
CCDC88AQ3V6T2 NF1P10-201ENST00000613227 742 ntBASIC3.02□□□□□ -1.93
CCDC88AQ3V6T2 ERBIN-204ENST00000380943 6410 ntAPPRIS P3 TSL 1 (best) BASIC3.02□□□□□ -1.93
CCDC88AQ3V6T2 AC069528.2-201ENST00000624849 1991 ntBASIC3.02□□□□□ -1.93
CCDC88AQ3V6T2 LATS1-201ENST00000253339 4256 ntAPPRIS P1 TSL 1 (best) BASIC3.02□□□□□ -1.93
CCDC88AQ3V6T2 DYNAP-201ENST00000321600 2027 ntAPPRIS P3 TSL 2 BASIC3.01□□□□□ -1.93
CCDC88AQ3V6T2 ATP8A2P3-201ENST00000426792 1536 ntBASIC3.01□□□□□ -1.93
CCDC88AQ3V6T2 AC117529.2-201ENST00000512159 2068 ntBASIC3.01□□□□□ -1.93
CCDC88AQ3V6T2 KRTAP27-1-201ENST00000382835 682 ntAPPRIS P1 BASIC3.01□□□□□ -1.93
CCDC88AQ3V6T2 AL590004.2-201ENST00000404787 371 ntBASIC3.01□□□□□ -1.93
CCDC88AQ3V6T2 RPL23AP45-201ENST00000476406 468 ntBASIC3.01□□□□□ -1.93
CCDC88AQ3V6T2 AC012170.1-201ENST00000495139 359 ntBASIC3.01□□□□□ -1.93
CCDC88AQ3V6T2 AC113167.1-201ENST00000512941 570 ntTSL 4 BASIC3.01□□□□□ -1.93
CCDC88AQ3V6T2 MAL2-203ENST00000534619 578 ntTSL 4 BASIC3.01□□□□□ -1.93
CCDC88AQ3V6T2 RPL23AP84-201ENST00000571193 464 ntBASIC3.01□□□□□ -1.93
CCDC88AQ3V6T2 AP001004.1-201ENST00000582468 324 ntBASIC3.01□□□□□ -1.93
CCDC88AQ3V6T2 AC010200.2-201ENST00000605098 235 ntBASIC3.01□□□□□ -1.93
CCDC88AQ3V6T2 C8orf89-201ENST00000613105 495 ntAPPRIS ALT2 TSL 1 (best) BASIC3.01□□□□□ -1.93
CCDC88AQ3V6T2 ANKAR-209ENST00000520309 4410 ntAPPRIS P1 TSL 5 BASIC3.01□□□□□ -1.93
CCDC88AQ3V6T2 RMDN2-205ENST00000407257 2280 ntTSL 5 BASIC3.01□□□□□ -1.93
CCDC88AQ3V6T2 CCDC141-202ENST00000409284 6960 ntAPPRIS P2 TSL 1 (best) BASIC3.01□□□□□ -1.93
CCDC88AQ3V6T2 MAPK10-322ENST00000641485 4530 ntBASIC3.01□□□□□ -1.93
CCDC88AQ3V6T2 HDX-206ENST00000506585 6158 ntTSL 2 BASIC3.01□□□□□ -1.93
CCDC88AQ3V6T2 AC007179.2-204ENST00000444001 765 ntTSL 3 BASIC3.01□□□□□ -1.93
CCDC88AQ3V6T2 NHS-AS1-201ENST00000452788 366 ntTSL 3 BASIC3.01□□□□□ -1.93
CCDC88AQ3V6T2 PLCXD2-AS1-201ENST00000493131 491 ntTSL 3 BASIC3.01□□□□□ -1.93
CCDC88AQ3V6T2 AC010406.1-201ENST00000507948 555 ntTSL 3 BASIC3.01□□□□□ -1.93
CCDC88AQ3V6T2 AC107222.1-201ENST00000510899 637 ntBASIC3.01□□□□□ -1.93
CCDC88AQ3V6T2 AC010620.2-201ENST00000600135 313 ntBASIC3.01□□□□□ -1.93
CCDC88AQ3V6T2 AC135012.2-201ENST00000600234 479 ntTSL 2 BASIC3.01□□□□□ -1.93
CCDC88AQ3V6T2 AC012531.5-201ENST00000611375 151 ntBASIC3.01□□□□□ -1.93
CCDC88AQ3V6T2 SENP7-206ENST00000394094 4703 ntAPPRIS ALT2 TSL 1 (best) BASIC3□□□□□ -1.93
CCDC88AQ3V6T2 NSRP1P1-201ENST00000444067 1693 ntBASIC3□□□□□ -1.93
CCDC88AQ3V6T2 AC114316.2-202ENST00000502934 2957 ntTSL 2 BASIC3□□□□□ -1.93
CCDC88AQ3V6T2 RAPGEF6-210ENST00000512052 3535 ntTSL 2 BASIC3□□□□□ -1.93
CCDC88AQ3V6T2 Z98742.2-201ENST00000431564 187 ntBASIC3□□□□□ -1.93
CCDC88AQ3V6T2 RPL7P31-201ENST00000450192 724 ntBASIC3□□□□□ -1.93
CCDC88AQ3V6T2 ODF2L-216ENST00000486215 311 ntTSL 2 BASIC3□□□□□ -1.93
CCDC88AQ3V6T2 AC234781.5-201ENST00000508429 271 ntBASIC3□□□□□ -1.93
CCDC88AQ3V6T2 AC027419.2-201ENST00000518439 497 ntTSL 3 BASIC3□□□□□ -1.93
CCDC88AQ3V6T2 AL161751.1-201ENST00000555636 1044 ntTSL 5 BASIC3□□□□□ -1.93
CCDC88AQ3V6T2 DISC1FP1-203ENST00000562678 796 ntTSL 3 BASIC3□□□□□ -1.93
CCDC88AQ3V6T2 TPMTP1-201ENST00000592307 737 ntBASIC3□□□□□ -1.93
CCDC88AQ3V6T2 VN1R81P-201ENST00000602085 372 ntBASIC3□□□□□ -1.93
CCDC88AQ3V6T2 RPL23AP61-201ENST00000623642 466 ntBASIC3□□□□□ -1.93
CCDC88AQ3V6T2 VPS54-202ENST00000354504 3594 ntTSL 1 (best) BASIC2.99□□□□□ -1.93
CCDC88AQ3V6T2 HSPE1P26-201ENST00000405341 275 ntBASIC2.99□□□□□ -1.93
CCDC88AQ3V6T2 FAT1P1-201ENST00000406588 507 ntBASIC2.99□□□□□ -1.93
CCDC88AQ3V6T2 AL118523.1-201ENST00000444436 480 ntTSL 3 BASIC2.99□□□□□ -1.93
CCDC88AQ3V6T2 AC022431.1-201ENST00000450941 438 ntBASIC2.99□□□□□ -1.93
CCDC88AQ3V6T2 RN7SL499P-201ENST00000481141 276 ntBASIC2.99□□□□□ -1.93
CCDC88AQ3V6T2 AC103975.1-201ENST00000482506 483 ntBASIC2.99□□□□□ -1.93
CCDC88AQ3V6T2 LINC02465-201ENST00000507099 532 ntTSL 4 BASIC2.99□□□□□ -1.93
CCDC88AQ3V6T2 AC116337.1-201ENST00000509680 687 ntBASIC2.99□□□□□ -1.93
CCDC88AQ3V6T2 AC108471.1-201ENST00000513977 287 ntBASIC2.99□□□□□ -1.93
CCDC88AQ3V6T2 EMP1-206ENST00000537612 505 ntTSL 3 BASIC2.99□□□□□ -1.93
CCDC88AQ3V6T2 MRPL51-203ENST00000538814 501 ntTSL 2 BASIC2.99□□□□□ -1.93
CCDC88AQ3V6T2 ACTR6-212ENST00000552376 1659 ntTSL 5 BASIC2.99□□□□□ -1.93
CCDC88AQ3V6T2 POPDC3-201ENST00000254765 1345 ntAPPRIS P1 TSL 1 (best) BASIC2.99□□□□□ -1.93
CCDC88AQ3V6T2 SYTL2-230ENST00000634661 6672 ntTSL 5 BASIC2.99□□□□□ -1.93
CCDC88AQ3V6T2 MTATP6P11-201ENST00000428071 670 ntBASIC2.99□□□□□ -1.93
CCDC88AQ3V6T2 C4orf45-201ENST00000434826 1215 ntAPPRIS P1 TSL 2 BASIC2.99□□□□□ -1.93
CCDC88AQ3V6T2 Z99127.2-201ENST00000441426 334 ntBASIC2.99□□□□□ -1.93
CCDC88AQ3V6T2 AL133260.2-201ENST00000445833 396 ntTSL 3 BASIC2.99□□□□□ -1.93
CCDC88AQ3V6T2 RN7SKP24-201ENST00000515888 284 ntBASIC2.99□□□□□ -1.93
CCDC88AQ3V6T2 SNORA31.1-201ENST00000515993 133 ntBASIC2.99□□□□□ -1.93
CCDC88AQ3V6T2 SNORA31.5-201ENST00000516190 133 ntBASIC2.99□□□□□ -1.93
CCDC88AQ3V6T2 RNA5SP309-201ENST00000516670 106 ntBASIC2.99□□□□□ -1.93
CCDC88AQ3V6T2 AC023442.2-201ENST00000526455 270 ntTSL 3 BASIC2.99□□□□□ -1.93
CCDC88AQ3V6T2 AP001001.1-202ENST00000527594 692 ntTSL 3 BASIC2.99□□□□□ -1.93
CCDC88AQ3V6T2 AP001528.2-201ENST00000528660 1156 ntTSL 5 BASIC2.99□□□□□ -1.93
CCDC88AQ3V6T2 AC079866.2-201ENST00000541870 515 ntTSL 3 BASIC2.99□□□□□ -1.93
CCDC88AQ3V6T2 AC128657.1-201ENST00000549459 145 ntBASIC2.99□□□□□ -1.93
CCDC88AQ3V6T2 AC096708.3-201ENST00000584226 559 ntTSL 2 BASIC2.99□□□□□ -1.93
CCDC88AQ3V6T2 Z99129.2-201ENST00000619967 314 ntBASIC2.99□□□□□ -1.93
CCDC88AQ3V6T2 MUC19-205ENST00000454784 24775 ntTSL 5 BASIC2.99□□□□□ -1.93
CCDC88AQ3V6T2 TEX9-207ENST00000560582 2005 ntTSL 3 BASIC2.98□□□□□ -1.93
CCDC88AQ3V6T2 RICTOR-201ENST00000296782 7505 ntTSL 1 (best) BASIC2.98□□□□□ -1.93
CCDC88AQ3V6T2 PRKD3-201ENST00000234179 5900 ntAPPRIS P1 TSL 1 (best) BASIC2.98□□□□□ -1.93
CCDC88AQ3V6T2 AC092326.2-201ENST00000624772 1561 ntBASIC2.98□□□□□ -1.93
CCDC88AQ3V6T2 TAS2R13-201ENST00000390677 1637 ntAPPRIS P1 BASIC2.98□□□□□ -1.93
CCDC88AQ3V6T2 MDM4-202ENST00000367180 547 ntTSL 3 BASIC2.98□□□□□ -1.93
CCDC88AQ3V6T2 RNU6-603P-201ENST00000411403 107 ntBASIC2.98□□□□□ -1.93
CCDC88AQ3V6T2 AL592045.1-201ENST00000429867 352 ntBASIC2.98□□□□□ -1.93
CCDC88AQ3V6T2 ARF4P2-201ENST00000430209 526 ntBASIC2.98□□□□□ -1.93
CCDC88AQ3V6T2 RPL36AP6-201ENST00000435770 321 ntBASIC2.98□□□□□ -1.93
CCDC88AQ3V6T2 TTTY16-201ENST00000437686 192 ntTSL 1 (best) BASIC2.98□□□□□ -1.93
Retrieved 100 of 98,524 protein–RNA pairs in 99.8 ms