Protein–RNA interactions for Protein: Q3L8U1

CHD9, Chromodomain-helicase-DNA-binding protein 9, humanhuman

Predictions only

Length 2,897 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHD9Q3L8U1 GABRG2-215ENST00000639213 9960 ntTSL 1 (best) BASIC2.24□□□□□ -2.05
CHD9Q3L8U1 FKTN-201ENST00000223528 7364 ntAPPRIS P1 TSL 1 (best) BASIC2.24□□□□□ -2.05
CHD9Q3L8U1 FRYL-205ENST00000503238 11103 ntAPPRIS P1 TSL 5 BASIC2.24□□□□□ -2.05
CHD9Q3L8U1 OR5AC2-201ENST00000358642 930 ntAPPRIS P1 BASIC2.24□□□□□ -2.05
CHD9Q3L8U1 MIR142-201ENST00000384835 87 ntBASIC2.24□□□□□ -2.05
CHD9Q3L8U1 AL355306.2-209ENST00000437803 357 ntTSL 2 BASIC2.24□□□□□ -2.05
CHD9Q3L8U1 AC007182.2-201ENST00000489251 402 ntBASIC2.24□□□□□ -2.05
CHD9Q3L8U1 OR52A4P-203ENST00000498233 1014 ntBASIC2.24□□□□□ -2.05
CHD9Q3L8U1 AC025881.1-201ENST00000518851 512 ntBASIC2.24□□□□□ -2.05
CHD9Q3L8U1 AL352955.1-201ENST00000555490 332 ntTSL 3 BASIC2.24□□□□□ -2.05
CHD9Q3L8U1 OR1C1-202ENST00000641256 3719 ntAPPRIS P1 BASIC2.23□□□□□ -2.05
CHD9Q3L8U1 MIR9-3-201ENST00000385084 90 ntBASIC2.23□□□□□ -2.05
CHD9Q3L8U1 FBXO11-201ENST00000402508 3844 ntAPPRIS P1 TSL 1 (best) BASIC2.23□□□□□ -2.05
CHD9Q3L8U1 AL121877.1-201ENST00000453704 622 ntBASIC2.23□□□□□ -2.05
CHD9Q3L8U1 ALDH7A1P3-201ENST00000492517 345 ntBASIC2.23□□□□□ -2.05
CHD9Q3L8U1 RNU6-1231P-201ENST00000517185 103 ntBASIC2.23□□□□□ -2.05
CHD9Q3L8U1 AC025300.1-201ENST00000526616 384 ntTSL 3 BASIC2.23□□□□□ -2.05
CHD9Q3L8U1 AC025281.1-201ENST00000567026 265 ntBASIC2.23□□□□□ -2.05
CHD9Q3L8U1 AC091953.2-201ENST00000623979 160 ntBASIC2.23□□□□□ -2.05
CHD9Q3L8U1 TMEM59-205ENST00000371348 1911 ntTSL 1 (best) BASIC2.23□□□□□ -2.05
CHD9Q3L8U1 HTR2B-201ENST00000258400 2246 ntAPPRIS P1 TSL 1 (best) BASIC2.23□□□□□ -2.05
CHD9Q3L8U1 ANKRD18EP-201ENST00000405487 2632 ntBASIC2.23□□□□□ -2.05
CHD9Q3L8U1 SYTL2-230ENST00000634661 6672 ntTSL 5 BASIC2.23□□□□□ -2.05
CHD9Q3L8U1 RNU6-316P-201ENST00000391027 107 ntBASIC2.23□□□□□ -2.05
CHD9Q3L8U1 AC006333.1-201ENST00000422401 410 ntTSL 3 BASIC2.23□□□□□ -2.05
CHD9Q3L8U1 AC011753.1-201ENST00000451001 220 ntBASIC2.23□□□□□ -2.05
CHD9Q3L8U1 AL133279.1-201ENST00000553487 473 ntTSL 3 BASIC2.23□□□□□ -2.05
CHD9Q3L8U1 AL353811.1-201ENST00000602851 736 ntTSL 5 BASIC2.23□□□□□ -2.05
CHD9Q3L8U1 AC110609.1-201ENST00000608228 303 ntTSL 3 BASIC2.23□□□□□ -2.05
CHD9Q3L8U1 OR5V1-217ENST00000641768 2763 ntAPPRIS P1 BASIC2.23□□□□□ -2.05
CHD9Q3L8U1 PIK3C2G-206ENST00000538779 4963 ntTSL 5 BASIC2.22□□□□□ -2.05
CHD9Q3L8U1 KNTC1-201ENST00000333479 6975 ntAPPRIS P1 TSL 1 (best) BASIC2.22□□□□□ -2.05
CHD9Q3L8U1 SNORA51.11-201ENST00000384442 131 ntBASIC2.22□□□□□ -2.05
CHD9Q3L8U1 AL590399.3-201ENST00000438072 543 ntTSL 5 BASIC2.22□□□□□ -2.05
CHD9Q3L8U1 RPL23AP76-201ENST00000441860 458 ntBASIC2.22□□□□□ -2.05
CHD9Q3L8U1 AL589740.1-201ENST00000457513 756 ntTSL 3 BASIC2.22□□□□□ -2.05
CHD9Q3L8U1 AC017007.3-201ENST00000479865 435 ntBASIC2.22□□□□□ -2.05
CHD9Q3L8U1 AC068305.1-201ENST00000497406 726 ntBASIC2.22□□□□□ -2.05
CHD9Q3L8U1 AC022272.1-201ENST00000503478 777 ntTSL 2 BASIC2.22□□□□□ -2.05
CHD9Q3L8U1 RNA5SP380-201ENST00000517190 98 ntBASIC2.22□□□□□ -2.05
CHD9Q3L8U1 MIR4303-201ENST00000581299 66 ntBASIC2.22□□□□□ -2.05
CHD9Q3L8U1 ATXN3-248ENST00000558190 26812 ntAPPRIS P1 TSL 1 (best) BASIC2.22□□□□□ -2.05
CHD9Q3L8U1 AKAP9-202ENST00000358100 10309 ntTSL 1 (best) BASIC2.22□□□□□ -2.05
CHD9Q3L8U1 OR8K3-204ENST00000641689 2380 ntAPPRIS P1 BASIC2.22□□□□□ -2.05
CHD9Q3L8U1 AL078645.1-201ENST00000414377 423 ntTSL 3 BASIC2.22□□□□□ -2.05
CHD9Q3L8U1 RPS24P8-201ENST00000431490 402 ntBASIC2.22□□□□□ -2.05
CHD9Q3L8U1 RNA5SP76-201ENST00000516277 87 ntBASIC2.22□□□□□ -2.05
CHD9Q3L8U1 RN7SKP96-201ENST00000516948 297 ntBASIC2.22□□□□□ -2.05
CHD9Q3L8U1 HMGB1P41-201ENST00000520234 440 ntBASIC2.22□□□□□ -2.05
CHD9Q3L8U1 SNRPGP19-201ENST00000603826 189 ntBASIC2.22□□□□□ -2.05
CHD9Q3L8U1 AC016590.3-201ENST00000611171 753 ntBASIC2.22□□□□□ -2.05
CHD9Q3L8U1 AC108479.2-201ENST00000617314 601 ntBASIC2.22□□□□□ -2.05
CHD9Q3L8U1 AC093909.5-201ENST00000621839 1799 ntBASIC2.22□□□□□ -2.05
CHD9Q3L8U1 PIK3CA-201ENST00000263967 9093 ntAPPRIS P1 TSL 2 BASIC2.22□□□□□ -2.05
CHD9Q3L8U1 FOXP2-210ENST00000403559 6415 ntTSL 2 BASIC2.22□□□□□ -2.05
CHD9Q3L8U1 MACF1-204ENST00000372915 23440 ntAPPRIS ALT2 TSL 5 BASIC2.22□□□□□ -2.05
CHD9Q3L8U1 METTL18-201ENST00000303469 1426 ntAPPRIS P1 TSL 1 (best) BASIC2.21□□□□□ -2.05
CHD9Q3L8U1 LINC02516-201ENST00000563724 1771 ntTSL 2 BASIC2.21□□□□□ -2.06
CHD9Q3L8U1 DEFB106A-201ENST00000335186 303 ntAPPRIS P1 TSL 1 (best) BASIC2.21□□□□□ -2.06
CHD9Q3L8U1 MIR337-201ENST00000362281 93 ntBASIC2.21□□□□□ -2.06
CHD9Q3L8U1 GYPE-202ENST00000437468 499 ntAPPRIS P1 TSL 1 (best) BASIC2.21□□□□□ -2.06
CHD9Q3L8U1 AL589994.2-201ENST00000621124 579 ntBASIC2.21□□□□□ -2.06
CHD9Q3L8U1 KIAA0586-202ENST00000354386 5226 ntAPPRIS ALT2 TSL 2 BASIC2.21□□□□□ -2.06
CHD9Q3L8U1 OR1L3-201ENST00000304820 1118 ntAPPRIS P1 BASIC2.21□□□□□ -2.06
CHD9Q3L8U1 RNY1P10-201ENST00000363268 113 ntBASIC2.21□□□□□ -2.06
CHD9Q3L8U1 U8.10-201ENST00000384260 133 ntBASIC2.21□□□□□ -2.06
CHD9Q3L8U1 AC003001.1-201ENST00000443247 1135 ntTSL 5 BASIC2.21□□□□□ -2.06
CHD9Q3L8U1 SPINK9-202ENST00000511717 604 ntAPPRIS ALT2 TSL 5 BASIC2.21□□□□□ -2.06
CHD9Q3L8U1 snoZ278.1-201ENST00000517059 112 ntBASIC2.21□□□□□ -2.06
CHD9Q3L8U1 OR4T1P-201ENST00000554933 911 ntBASIC2.21□□□□□ -2.06
CHD9Q3L8U1 MIR5002-201ENST00000584713 97 ntBASIC2.21□□□□□ -2.06
CHD9Q3L8U1 MACROD2-IT1-202ENST00000605675 575 ntTSL 5 BASIC2.21□□□□□ -2.06
CHD9Q3L8U1 PHC3-215ENST00000495893 12666 ntAPPRIS P1 TSL 1 (best) BASIC2.21□□□□□ -2.06
CHD9Q3L8U1 KIAA1107-203ENST00000637221 4337 ntTSL 1 (best) BASIC2.2□□□□□ -2.06
CHD9Q3L8U1 CLEC7A-203ENST00000310002 425 ntTSL 1 (best) BASIC2.2□□□□□ -2.06
CHD9Q3L8U1 AC133106.1-201ENST00000419029 397 ntTSL 3 BASIC2.2□□□□□ -2.06
CHD9Q3L8U1 AC007879.4-201ENST00000440545 361 ntTSL 3 BASIC2.2□□□□□ -2.06
CHD9Q3L8U1 AC114316.1-201ENST00000511323 278 ntTSL 5 BASIC2.2□□□□□ -2.06
CHD9Q3L8U1 VN1R80P-201ENST00000597126 338 ntBASIC2.2□□□□□ -2.06
CHD9Q3L8U1 CYP3A51P-201ENST00000633513 256 ntBASIC2.2□□□□□ -2.06
CHD9Q3L8U1 AC009487.4-201ENST00000624969 3585 ntBASIC2.2□□□□□ -2.06
CHD9Q3L8U1 IQCM-206ENST00000636793 1900 ntAPPRIS P5 TSL 5 BASIC2.2□□□□□ -2.06
CHD9Q3L8U1 ZNF451-208ENST00000491832 3632 ntAPPRIS ALT2 TSL 1 (best) BASIC2.2□□□□□ -2.06
CHD9Q3L8U1 TEX9-207ENST00000560582 2005 ntTSL 3 BASIC2.2□□□□□ -2.06
CHD9Q3L8U1 RNA5SP190-201ENST00000365222 118 ntBASIC2.2□□□□□ -2.06
CHD9Q3L8U1 ZBTB8OS-202ENST00000373501 598 ntTSL 5 BASIC2.2□□□□□ -2.06
CHD9Q3L8U1 RNU2-17P-201ENST00000410290 190 ntBASIC2.2□□□□□ -2.06
CHD9Q3L8U1 CYP3A43-205ENST00000415413 990 ntTSL 5 BASIC2.2□□□□□ -2.06
CHD9Q3L8U1 AL731684.2-201ENST00000426839 333 ntTSL 5 BASIC2.2□□□□□ -2.06
CHD9Q3L8U1 AC003989.2-201ENST00000440224 169 ntBASIC2.2□□□□□ -2.06
CHD9Q3L8U1 SNRPGP9-201ENST00000456025 225 ntBASIC2.2□□□□□ -2.06
CHD9Q3L8U1 CSN1S1-202ENST00000505782 871 ntAPPRIS ALT2 TSL 5 BASIC2.2□□□□□ -2.06
CHD9Q3L8U1 XKRY-201ENST00000510392 1100 ntBASIC2.2□□□□□ -2.06
CHD9Q3L8U1 RNU6ATAC9P-201ENST00000516210 116 ntBASIC2.2□□□□□ -2.06
CHD9Q3L8U1 MYOZ2-201ENST00000307128 2597 ntAPPRIS P1 TSL 1 (best) BASIC2.2□□□□□ -2.06
CHD9Q3L8U1 KTN1-206ENST00000413890 4473 ntAPPRIS ALT2 TSL 5 BASIC2.2□□□□□ -2.06
CHD9Q3L8U1 MS4A5-201ENST00000300190 722 ntAPPRIS P1 TSL 1 (best) BASIC2.2□□□□□ -2.06
CHD9Q3L8U1 AL138878.1-201ENST00000405131 347 ntBASIC2.2□□□□□ -2.06
CHD9Q3L8U1 NDUFB4P6-201ENST00000436819 366 ntBASIC2.2□□□□□ -2.06
CHD9Q3L8U1 Z73417.1-201ENST00000447373 778 ntBASIC2.2□□□□□ -2.06
Retrieved 100 of 98,524 protein–RNA pairs in 110.4 ms