Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 AP003385.6-201ENST00000531603 374 ntBASIC3.98□□□□□ -1.77
COL28A1Q2UY09 KLRF2-201ENST00000535540 731 ntAPPRIS P1 TSL 1 (best) BASIC3.98□□□□□ -1.77
COL28A1Q2UY09 KLRF1-203ENST00000537723 598 ntTSL 1 (best) BASIC3.98□□□□□ -1.77
COL28A1Q2UY09 CACNA1C-AS4-201ENST00000544415 735 ntTSL 3 BASIC3.98□□□□□ -1.77
COL28A1Q2UY09 AC128707.1-201ENST00000552230 494 ntTSL 3 BASIC3.98□□□□□ -1.77
COL28A1Q2UY09 AL359233.1-201ENST00000554029 364 ntTSL 3 BASIC3.98□□□□□ -1.77
COL28A1Q2UY09 AC009039.1-201ENST00000568711 471 ntTSL 4 BASIC3.98□□□□□ -1.77
COL28A1Q2UY09 AC116003.1-202ENST00000579386 501 ntTSL 3 BASIC3.98□□□□□ -1.77
COL28A1Q2UY09 LINC00907-208ENST00000593051 1092 ntTSL 1 (best) BASIC3.98□□□□□ -1.77
COL28A1Q2UY09 AC020914.4-201ENST00000597690 277 ntBASIC3.98□□□□□ -1.77
COL28A1Q2UY09 AC010680.3-201ENST00000604215 520 ntBASIC3.98□□□□□ -1.77
COL28A1Q2UY09 AL031666.3-201ENST00000609320 1006 ntBASIC3.98□□□□□ -1.77
COL28A1Q2UY09 AL445264.1-201ENST00000621719 171 ntBASIC3.98□□□□□ -1.77
COL28A1Q2UY09 FP325313.1-201ENST00000638228 703 ntBASIC3.98□□□□□ -1.77
COL28A1Q2UY09 OR11H4-203ENST00000641525 1082 ntAPPRIS P1 BASIC3.98□□□□□ -1.77
COL28A1Q2UY09 ARHGAP28-202ENST00000314319 5415 ntAPPRIS P2 TSL 5 BASIC3.98□□□□□ -1.77
COL28A1Q2UY09 XCL1-201ENST00000367818 1367 ntAPPRIS P1 TSL 1 (best) BASIC3.98□□□□□ -1.77
COL28A1Q2UY09 ANKRD62P1-201ENST00000434304 1623 ntBASIC3.98□□□□□ -1.77
COL28A1Q2UY09 OR10D3-202ENST00000641351 3561 ntAPPRIS P1 BASIC3.98□□□□□ -1.77
COL28A1Q2UY09 AC027287.1-201ENST00000553115 1453 ntBASIC3.98□□□□□ -1.77
COL28A1Q2UY09 MECOM-219ENST00000628990 4835 ntAPPRIS P3 TSL 1 (best) BASIC3.97□□□□□ -1.77
COL28A1Q2UY09 CFL2-202ENST00000341223 3131 ntAPPRIS P1 TSL 1 (best) BASIC3.97□□□□□ -1.77
COL28A1Q2UY09 MGAT4A-204ENST00000414521 3709 ntTSL 2 BASIC3.97□□□□□ -1.77
COL28A1Q2UY09 MAPK10-253ENST00000641010 4072 ntBASIC3.97□□□□□ -1.77
COL28A1Q2UY09 XKR3-201ENST00000331428 1690 ntAPPRIS P1 TSL 1 (best) BASIC3.97□□□□□ -1.77
COL28A1Q2UY09 GPX8-203ENST00000503787 1411 ntAPPRIS P1 TSL 1 (best) BASIC3.97□□□□□ -1.77
COL28A1Q2UY09 FEZ2-201ENST00000305852 1782 ntTSL 5 BASIC3.97□□□□□ -1.77
COL28A1Q2UY09 SLC38A2-209ENST00000551374 2802 ntTSL 2 BASIC3.97□□□□□ -1.77
COL28A1Q2UY09 VEPH1-203ENST00000392833 3979 ntTSL 1 (best) BASIC3.97□□□□□ -1.77
COL28A1Q2UY09 RNU6-433P-201ENST00000363216 104 ntBASIC3.97□□□□□ -1.77
COL28A1Q2UY09 RNA5SP175-201ENST00000364275 119 ntBASIC3.97□□□□□ -1.77
COL28A1Q2UY09 Y_RNA.500-201ENST00000384466 111 ntBASIC3.97□□□□□ -1.77
COL28A1Q2UY09 RNVU1-14-201ENST00000384770 164 ntBASIC3.97□□□□□ -1.77
COL28A1Q2UY09 MT-TC-201ENST00000387405 66 ntBASIC3.97□□□□□ -1.77
COL28A1Q2UY09 U3.29-201ENST00000391296 212 ntBASIC3.97□□□□□ -1.77
COL28A1Q2UY09 AL078590.1-201ENST00000412602 479 ntTSL 3 BASIC3.97□□□□□ -1.77
COL28A1Q2UY09 AL117381.1-201ENST00000412972 374 ntTSL 3 BASIC3.97□□□□□ -1.77
COL28A1Q2UY09 AL024509.3-201ENST00000413898 745 ntTSL 1 (best) BASIC3.97□□□□□ -1.77
COL28A1Q2UY09 AMMECR1LP1-201ENST00000415152 841 ntBASIC3.97□□□□□ -1.77
COL28A1Q2UY09 UBTFL3-201ENST00000418934 1024 ntBASIC3.97□□□□□ -1.77
COL28A1Q2UY09 MTCO2P5-201ENST00000422621 426 ntBASIC3.97□□□□□ -1.77
COL28A1Q2UY09 GLRXP1-201ENST00000423261 334 ntBASIC3.97□□□□□ -1.77
COL28A1Q2UY09 AC093698.1-201ENST00000423843 571 ntBASIC3.97□□□□□ -1.77
COL28A1Q2UY09 F10-AS1-201ENST00000424635 417 ntTSL 5 BASIC3.97□□□□□ -1.77
COL28A1Q2UY09 AC006548.1-201ENST00000427470 102 ntBASIC3.97□□□□□ -1.77
COL28A1Q2UY09 MTND1P20-201ENST00000430341 950 ntBASIC3.97□□□□□ -1.77
COL28A1Q2UY09 AC236972.1-201ENST00000433225 199 ntBASIC3.97□□□□□ -1.77
COL28A1Q2UY09 AC010132.1-201ENST00000433315 561 ntTSL 4 BASIC3.97□□□□□ -1.77
COL28A1Q2UY09 TTTY20-201ENST00000434487 259 ntTSL 1 (best) BASIC3.97□□□□□ -1.77
COL28A1Q2UY09 MTCYBP39-201ENST00000437562 491 ntBASIC3.97□□□□□ -1.77
COL28A1Q2UY09 LINC01307-201ENST00000439146 474 ntTSL 3 BASIC3.97□□□□□ -1.77
COL28A1Q2UY09 EEF1E1P1-201ENST00000446998 430 ntBASIC3.97□□□□□ -1.77
COL28A1Q2UY09 AL162388.1-201ENST00000450912 352 ntBASIC3.97□□□□□ -1.77
COL28A1Q2UY09 AC107072.2-201ENST00000452412 555 ntTSL 3 BASIC3.97□□□□□ -1.77
COL28A1Q2UY09 SNORD108-201ENST00000459332 71 ntBASIC3.97□□□□□ -1.77
COL28A1Q2UY09 snoU13.3-201ENST00000459441 104 ntBASIC3.97□□□□□ -1.77
COL28A1Q2UY09 LINC02077-201ENST00000465795 409 ntTSL 3 BASIC3.97□□□□□ -1.77
COL28A1Q2UY09 RPL31P50-201ENST00000471002 296 ntBASIC3.97□□□□□ -1.77
COL28A1Q2UY09 AC087312.1-201ENST00000471411 480 ntBASIC3.97□□□□□ -1.77
COL28A1Q2UY09 SYPL1P1-201ENST00000473622 768 ntBASIC3.97□□□□□ -1.77
COL28A1Q2UY09 UBTFL6-201ENST00000477929 1024 ntBASIC3.97□□□□□ -1.77
COL28A1Q2UY09 AL049873.1-201ENST00000480540 376 ntBASIC3.97□□□□□ -1.77
COL28A1Q2UY09 AC098587.1-201ENST00000508241 540 ntTSL 4 BASIC3.97□□□□□ -1.77
COL28A1Q2UY09 ADGRL3-AS1-204ENST00000509461 481 ntTSL 5 BASIC3.97□□□□□ -1.77
COL28A1Q2UY09 AC100782.1-201ENST00000520778 590 ntTSL 3 BASIC3.97□□□□□ -1.77
COL28A1Q2UY09 AC120042.2-201ENST00000521556 667 ntTSL 2 BASIC3.97□□□□□ -1.77
COL28A1Q2UY09 COX6CP8-201ENST00000522620 226 ntBASIC3.97□□□□□ -1.77
COL28A1Q2UY09 AC022861.1-201ENST00000522981 663 ntBASIC3.97□□□□□ -1.77
COL28A1Q2UY09 AC087373.1-201ENST00000524920 491 ntBASIC3.97□□□□□ -1.77
COL28A1Q2UY09 PTS-202ENST00000524931 696 ntTSL 3 BASIC3.97□□□□□ -1.77
COL28A1Q2UY09 SNHG1-208ENST00000538266 347 ntTSL 3 BASIC3.97□□□□□ -1.77
COL28A1Q2UY09 OR6C73P-201ENST00000546432 358 ntBASIC3.97□□□□□ -1.77
COL28A1Q2UY09 AL352979.3-201ENST00000553515 247 ntBASIC3.97□□□□□ -1.77
COL28A1Q2UY09 ZNF616-203ENST00000597013 577 ntTSL 4 BASIC3.97□□□□□ -1.77
COL28A1Q2UY09 AL354984.3-201ENST00000604803 325 ntBASIC3.97□□□□□ -1.77
COL28A1Q2UY09 AC010738.1-201ENST00000604970 987 ntBASIC3.97□□□□□ -1.77
COL28A1Q2UY09 AC007563.2-202ENST00000607591 394 ntTSL 3 BASIC3.97□□□□□ -1.77
COL28A1Q2UY09 AL021997.2-201ENST00000615674 271 ntBASIC3.97□□□□□ -1.77
COL28A1Q2UY09 DLEU1_2.1-201ENST00000617920 342 ntBASIC3.97□□□□□ -1.77
COL28A1Q2UY09 AC004009.2-201ENST00000623016 728 ntBASIC3.97□□□□□ -1.77
COL28A1Q2UY09 CR381572.1-201ENST00000625098 102 ntBASIC3.97□□□□□ -1.77
COL28A1Q2UY09 RAPGEF6-201ENST00000296859 5618 ntAPPRIS ALT2 TSL 1 (best) BASIC3.97□□□□□ -1.77
COL28A1Q2UY09 ZNF480-202ENST00000335090 2722 ntTSL 3 BASIC3.97□□□□□ -1.77
COL28A1Q2UY09 MYOT-202ENST00000421631 1474 ntTSL 2 BASIC3.97□□□□□ -1.77
COL28A1Q2UY09 STON1-GTF2A1L-202ENST00000394754 3824 ntAPPRIS P1 TSL 1 (best) BASIC3.97□□□□□ -1.77
COL28A1Q2UY09 KBTBD3-207ENST00000534815 3396 ntTSL 5 BASIC3.97□□□□□ -1.77
COL28A1Q2UY09 PCDH15-234ENST00000622048 6820 ntTSL 5 BASIC3.97□□□□□ -1.77
COL28A1Q2UY09 LMNTD1-204ENST00000458174 1677 ntAPPRIS ALT2 TSL 2 BASIC3.97□□□□□ -1.77
COL28A1Q2UY09 OR5J2-201ENST00000312298 939 ntAPPRIS P1 BASIC3.96□□□□□ -1.78
COL28A1Q2UY09 RABGGTB-202ENST00000370826 512 ntTSL 2 BASIC3.96□□□□□ -1.78
COL28A1Q2UY09 SNORD116-2-201ENST00000384274 95 ntBASIC3.96□□□□□ -1.78
COL28A1Q2UY09 SNORD116-6-201ENST00000384711 96 ntBASIC3.96□□□□□ -1.78
COL28A1Q2UY09 AL031577.2-201ENST00000404133 280 ntBASIC3.96□□□□□ -1.78
COL28A1Q2UY09 AC138024.1-201ENST00000420867 699 ntTSL 3 BASIC3.96□□□□□ -1.78
COL28A1Q2UY09 AC019178.2-201ENST00000423595 505 ntBASIC3.96□□□□□ -1.78
COL28A1Q2UY09 RWDD4P2-201ENST00000426392 563 ntBASIC3.96□□□□□ -1.78
COL28A1Q2UY09 HSPE1P28-201ENST00000443139 211 ntBASIC3.96□□□□□ -1.78
COL28A1Q2UY09 AC009950.1-206ENST00000445199 517 ntTSL 3 BASIC3.96□□□□□ -1.78
COL28A1Q2UY09 AL355997.1-202ENST00000454361 610 ntTSL 3 BASIC3.96□□□□□ -1.78
COL28A1Q2UY09 RPS20P24-201ENST00000457473 361 ntBASIC3.96□□□□□ -1.78
Retrieved 100 of 98,524 protein–RNA pairs in 110.9 ms