Protein–RNA interactions for Protein: O00151

PDLIM1, PDZ and LIM domain protein 1, humanhuman

Predictions only

Length 329 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM1O00151 AL591419.1-201ENST00000427423 339 ntBASIC3.35□□□□□ -1.87
PDLIM1O00151 OR2AS1P-201ENST00000427827 319 ntBASIC3.35□□□□□ -1.87
PDLIM1O00151 UBXN7-204ENST00000428095 1173 ntTSL 1 (best) BASIC3.35□□□□□ -1.87
PDLIM1O00151 AC090617.2-201ENST00000433167 404 ntTSL 3 BASIC3.35□□□□□ -1.87
PDLIM1O00151 VDAC1P3-201ENST00000434069 851 ntBASIC3.35□□□□□ -1.87
PDLIM1O00151 AL023693.1-201ENST00000434255 216 ntTSL 5 BASIC3.35□□□□□ -1.87
PDLIM1O00151 ELOCP13-201ENST00000443934 329 ntBASIC3.35□□□□□ -1.87
PDLIM1O00151 AL034418.1-201ENST00000448675 860 ntBASIC3.35□□□□□ -1.87
PDLIM1O00151 AC112492.1-201ENST00000449607 712 ntBASIC3.35□□□□□ -1.87
PDLIM1O00151 AC104308.1-201ENST00000454621 333 ntBASIC3.35□□□□□ -1.87
PDLIM1O00151 AC093157.1-204ENST00000454721 753 ntTSL 3 BASIC3.35□□□□□ -1.87
PDLIM1O00151 NDUFAF4P3-201ENST00000456468 525 ntBASIC3.35□□□□□ -1.87
PDLIM1O00151 PNPLA4P1-201ENST00000458328 305 ntBASIC3.35□□□□□ -1.87
PDLIM1O00151 U8.18-201ENST00000459285 133 ntBASIC3.35□□□□□ -1.87
PDLIM1O00151 AL133162.1-201ENST00000463228 453 ntBASIC3.35□□□□□ -1.87
PDLIM1O00151 AC104137.1-201ENST00000503625 385 ntTSL 3 BASIC3.35□□□□□ -1.87
PDLIM1O00151 RHOBTB3-204ENST00000504179 883 ntTSL 5 BASIC3.35□□□□□ -1.87
PDLIM1O00151 PPP2R2B-IT1-201ENST00000505921 447 ntTSL 3 BASIC3.35□□□□□ -1.87
PDLIM1O00151 AC113420.1-201ENST00000507903 571 ntBASIC3.35□□□□□ -1.87
PDLIM1O00151 AC113347.3-201ENST00000509113 148 ntBASIC3.35□□□□□ -1.87
PDLIM1O00151 TPT1P8-201ENST00000510120 555 ntBASIC3.35□□□□□ -1.87
PDLIM1O00151 MTCYBP37-201ENST00000510642 1133 ntBASIC3.35□□□□□ -1.87
PDLIM1O00151 SCARNA1-201ENST00000517138 166 ntBASIC3.35□□□□□ -1.87
PDLIM1O00151 AC015468.3-201ENST00000518967 417 ntTSL 2 BASIC3.35□□□□□ -1.87
PDLIM1O00151 OR10V3P-201ENST00000525712 725 ntBASIC3.35□□□□□ -1.87
PDLIM1O00151 AC136475.4-201ENST00000534271 280 ntTSL 5 BASIC3.35□□□□□ -1.87
PDLIM1O00151 AC026333.2-201ENST00000542164 106 ntBASIC3.35□□□□□ -1.87
PDLIM1O00151 GTF2IP8-201ENST00000560687 584 ntBASIC3.35□□□□□ -1.87
PDLIM1O00151 AC090771.2-201ENST00000588794 571 ntTSL 3 BASIC3.35□□□□□ -1.87
PDLIM1O00151 AC113368.1-201ENST00000603736 382 ntBASIC3.35□□□□□ -1.87
PDLIM1O00151 AL627309.6-201ENST00000606857 840 ntBASIC3.35□□□□□ -1.87
PDLIM1O00151 AC005344.1-201ENST00000613391 459 ntBASIC3.35□□□□□ -1.87
PDLIM1O00151 AC006213.4-201ENST00000616184 634 ntBASIC3.35□□□□□ -1.87
PDLIM1O00151 AL158163.2-201ENST00000619110 700 ntBASIC3.35□□□□□ -1.87
PDLIM1O00151 KLRC2-206ENST00000619500 883 ntTSL 5 BASIC3.35□□□□□ -1.87
PDLIM1O00151 AP003171.2-202ENST00000634657 355 ntTSL 5 BASIC3.35□□□□□ -1.87
PDLIM1O00151 CCNYL2-203ENST00000638057 730 ntTSL 3 BASIC3.35□□□□□ -1.87
PDLIM1O00151 GRAMD1C-202ENST00000440446 3475 ntTSL 1 (best) BASIC3.35□□□□□ -1.87
PDLIM1O00151 EIF2A-201ENST00000273435 2083 ntAPPRIS ALT1 TSL 1 (best) BASIC3.35□□□□□ -1.87
PDLIM1O00151 FNDC3A-202ENST00000398316 5714 ntTSL 1 (best) BASIC3.35□□□□□ -1.87
PDLIM1O00151 GPR34-201ENST00000378138 1815 ntAPPRIS P1 TSL 1 (best) BASIC3.35□□□□□ -1.87
PDLIM1O00151 KLRC1-202ENST00000359151 1407 ntAPPRIS P4 TSL 1 (best) BASIC3.35□□□□□ -1.87
PDLIM1O00151 AP004289.2-201ENST00000444413 1457 ntBASIC3.35□□□□□ -1.87
PDLIM1O00151 C6orf10-202ENST00000375015 2173 ntAPPRIS ALT2 TSL 5 BASIC3.34□□□□□ -1.87
PDLIM1O00151 ZNF483-201ENST00000309235 3655 ntAPPRIS P1 TSL 1 (best) BASIC3.34□□□□□ -1.87
PDLIM1O00151 OR5AC2-201ENST00000358642 930 ntAPPRIS P1 BASIC3.34□□□□□ -1.87
PDLIM1O00151 Y_RNA.472-201ENST00000384322 102 ntBASIC3.34□□□□□ -1.87
PDLIM1O00151 TRAJ31-201ENST00000390506 57 ntAPPRIS P1 BASIC3.34□□□□□ -1.87
PDLIM1O00151 RNU6-837P-201ENST00000391056 108 ntBASIC3.34□□□□□ -1.87
PDLIM1O00151 RN7SKP202-201ENST00000410439 330 ntBASIC3.34□□□□□ -1.87
PDLIM1O00151 RNU2-28P-201ENST00000410457 189 ntBASIC3.34□□□□□ -1.87
PDLIM1O00151 AL391839.1-201ENST00000417447 265 ntTSL 2 BASIC3.34□□□□□ -1.87
PDLIM1O00151 OFD1P18Y-201ENST00000420889 959 ntBASIC3.34□□□□□ -1.87
PDLIM1O00151 AL513174.1-201ENST00000423182 629 ntBASIC3.34□□□□□ -1.87
PDLIM1O00151 BBIP1-203ENST00000423273 492 ntTSL 1 (best) BASIC3.34□□□□□ -1.87
PDLIM1O00151 MTCO2P23-201ENST00000425216 680 ntBASIC3.34□□□□□ -1.87
PDLIM1O00151 MRPS18BP2-201ENST00000434310 759 ntBASIC3.34□□□□□ -1.87
PDLIM1O00151 GTF2IP7-202ENST00000436677 309 ntBASIC3.34□□□□□ -1.87
PDLIM1O00151 HIGD1AP11-201ENST00000438361 280 ntBASIC3.34□□□□□ -1.87
PDLIM1O00151 USP9YP22-201ENST00000438971 294 ntBASIC3.34□□□□□ -1.87
PDLIM1O00151 ATP2B2-IT1-201ENST00000440152 472 ntTSL 3 BASIC3.34□□□□□ -1.87
PDLIM1O00151 NOTCH2P1-201ENST00000443481 624 ntBASIC3.34□□□□□ -1.87
PDLIM1O00151 SETD6P1-201ENST00000444575 317 ntBASIC3.34□□□□□ -1.87
PDLIM1O00151 BBIP1-206ENST00000447005 727 ntAPPRIS P1 TSL 2 BASIC3.34□□□□□ -1.87
PDLIM1O00151 MTCO1P48-201ENST00000448024 1096 ntBASIC3.34□□□□□ -1.87
PDLIM1O00151 AL031313.1-201ENST00000448435 256 ntBASIC3.34□□□□□ -1.87
PDLIM1O00151 GJE1-201ENST00000450456 916 ntAPPRIS P1 TSL 5 BASIC3.34□□□□□ -1.87
PDLIM1O00151 AL390730.1-201ENST00000457106 692 ntTSL 2 BASIC3.34□□□□□ -1.87
PDLIM1O00151 UBDP1-202ENST00000457888 382 ntBASIC3.34□□□□□ -1.87
PDLIM1O00151 RPS27AP1-201ENST00000475545 471 ntBASIC3.34□□□□□ -1.87
PDLIM1O00151 RPL23AP55-201ENST00000498163 452 ntBASIC3.34□□□□□ -1.87
PDLIM1O00151 SAR1B-204ENST00000502539 708 ntTSL 5 BASIC3.34□□□□□ -1.87
PDLIM1O00151 AC108078.3-201ENST00000502633 489 ntBASIC3.34□□□□□ -1.87
PDLIM1O00151 UBE2V1P12-201ENST00000503954 474 ntBASIC3.34□□□□□ -1.87
PDLIM1O00151 CCNG1-203ENST00000504553 732 ntTSL 3 BASIC3.34□□□□□ -1.87
PDLIM1O00151 OTUD4-208ENST00000509620 864 ntTSL 1 (best) BASIC3.34□□□□□ -1.87
PDLIM1O00151 AC012625.1-201ENST00000515153 625 ntTSL 5 BASIC3.34□□□□□ -1.87
PDLIM1O00151 RN7SKP116-201ENST00000516902 319 ntBASIC3.34□□□□□ -1.87
PDLIM1O00151 RNU6-1073P-201ENST00000517182 106 ntBASIC3.34□□□□□ -1.87
PDLIM1O00151 CFL2-206ENST00000556161 546 ntTSL 4 BASIC3.34□□□□□ -1.87
PDLIM1O00151 AC107954.1-201ENST00000565906 727 ntBASIC3.34□□□□□ -1.87
PDLIM1O00151 AC012182.1-201ENST00000570133 895 ntBASIC3.34□□□□□ -1.87
PDLIM1O00151 AC004147.3-201ENST00000577709 375 ntTSL 3 BASIC3.34□□□□□ -1.87
PDLIM1O00151 MIR4474-201ENST00000579189 78 ntBASIC3.34□□□□□ -1.87
PDLIM1O00151 MIR5187-201ENST00000583479 76 ntBASIC3.34□□□□□ -1.87
PDLIM1O00151 LINC01899-203ENST00000584810 337 ntTSL 2 BASIC3.34□□□□□ -1.87
PDLIM1O00151 AC011458.1-201ENST00000604034 617 ntBASIC3.34□□□□□ -1.87
PDLIM1O00151 AC021749.1-201ENST00000604322 607 ntBASIC3.34□□□□□ -1.87
PDLIM1O00151 AC006077.1-201ENST00000604746 343 ntBASIC3.34□□□□□ -1.87
PDLIM1O00151 RNU1-30P-201ENST00000606575 163 ntBASIC3.34□□□□□ -1.87
PDLIM1O00151 AL157392.4-201ENST00000609756 345 ntBASIC3.34□□□□□ -1.87
PDLIM1O00151 AL354976.1-201ENST00000613843 387 ntBASIC3.34□□□□□ -1.87
PDLIM1O00151 AC090116.1-201ENST00000615679 446 ntBASIC3.34□□□□□ -1.87
PDLIM1O00151 AL732618.1-201ENST00000623251 301 ntBASIC3.34□□□□□ -1.87
PDLIM1O00151 SMARCA2-229ENST00000634781 1106 ntTSL 1 (best) BASIC3.34□□□□□ -1.87
PDLIM1O00151 CYYR1-AS1-201ENST00000357401 3412 ntTSL 2 BASIC3.34□□□□□ -1.87
PDLIM1O00151 FIGNL1-202ENST00000395556 3485 ntAPPRIS P1 TSL 2 BASIC3.34□□□□□ -1.87
PDLIM1O00151 OR51L1-203ENST00000641819 7300 ntAPPRIS P1 BASIC3.34□□□□□ -1.87
PDLIM1O00151 MINDY3-202ENST00000378036 2452 ntTSL 2 BASIC3.34□□□□□ -1.88
PDLIM1O00151 PPIG-207ENST00000448752 2498 ntAPPRIS P1 TSL 1 (best) BASIC3.34□□□□□ -1.88
Retrieved 100 of 98,524 protein–RNA pairs in 79.5 ms