Protein–RNA interactions for Protein: Q9UKF6

CPSF3, Cleavage and polyadenylation specificity factor subunit 3, humanhuman

Known RBP Predictions only

Length 684 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3Q9UKF6 VN1R34P-201ENST00000447387 883 ntBASIC3.87□□□□□ -1.79
CPSF3Q9UKF6 PDSS1P2-201ENST00000449397 678 ntBASIC3.87□□□□□ -1.79
CPSF3Q9UKF6 AL365318.1-201ENST00000453128 705 ntTSL 3 BASIC3.87□□□□□ -1.79
CPSF3Q9UKF6 AC091212.1-201ENST00000474798 395 ntTSL 5 BASIC3.87□□□□□ -1.79
CPSF3Q9UKF6 ACTR3BP4-201ENST00000503033 1244 ntBASIC3.87□□□□□ -1.79
CPSF3Q9UKF6 OR5H5P-201ENST00000503164 928 ntBASIC3.87□□□□□ -1.79
CPSF3Q9UKF6 KLRA1P-201ENST00000503499 986 ntBASIC3.87□□□□□ -1.79
CPSF3Q9UKF6 AC027613.1-201ENST00000508414 457 ntTSL 3 BASIC3.87□□□□□ -1.79
CPSF3Q9UKF6 AC116616.1-201ENST00000508815 366 ntTSL 3 BASIC3.87□□□□□ -1.79
CPSF3Q9UKF6 MTCO3P44-201ENST00000510977 541 ntBASIC3.87□□□□□ -1.79
CPSF3Q9UKF6 AC024132.3-201ENST00000513616 649 ntTSL 5 BASIC3.87□□□□□ -1.79
CPSF3Q9UKF6 PTK2-220ENST00000520151 573 ntTSL 4 BASIC3.87□□□□□ -1.79
CPSF3Q9UKF6 AP004371.1-201ENST00000525240 214 ntBASIC3.87□□□□□ -1.79
CPSF3Q9UKF6 OR5B10P-201ENST00000532869 642 ntBASIC3.87□□□□□ -1.79
CPSF3Q9UKF6 IFNG-AS1-201ENST00000536914 494 ntTSL 5 BASIC3.87□□□□□ -1.79
CPSF3Q9UKF6 AC125611.1-201ENST00000549563 229 ntBASIC3.87□□□□□ -1.79
CPSF3Q9UKF6 MTND4P33-201ENST00000556706 766 ntBASIC3.87□□□□□ -1.79
CPSF3Q9UKF6 AC090695.1-201ENST00000561269 1222 ntBASIC3.87□□□□□ -1.79
CPSF3Q9UKF6 AL162591.3-201ENST00000607963 681 ntTSL 3 BASIC3.87□□□□□ -1.79
CPSF3Q9UKF6 AC092106.3-201ENST00000611308 722 ntBASIC3.87□□□□□ -1.79
CPSF3Q9UKF6 AL354976.1-201ENST00000613843 387 ntBASIC3.87□□□□□ -1.79
CPSF3Q9UKF6 AC120349.2-201ENST00000625002 298 ntBASIC3.87□□□□□ -1.79
CPSF3Q9UKF6 RPS4Y2-201ENST00000629237 792 ntAPPRIS P1 TSL 1 (best) BASIC3.87□□□□□ -1.79
CPSF3Q9UKF6 AC008993.2-201ENST00000631744 806 ntBASIC3.87□□□□□ -1.79
CPSF3Q9UKF6 CEP83-202ENST00000397807 2737 ntTSL 5 BASIC3.87□□□□□ -1.79
CPSF3Q9UKF6 TMEM71-202ENST00000377901 1861 ntAPPRIS ALT2 TSL 1 (best) BASIC3.87□□□□□ -1.79
CPSF3Q9UKF6 ATXN3-248ENST00000558190 26812 ntAPPRIS P1 TSL 1 (best) BASIC3.87□□□□□ -1.79
CPSF3Q9UKF6 PTPN22-207ENST00000528414 3424 ntTSL 1 (best) BASIC3.87□□□□□ -1.79
CPSF3Q9UKF6 ERMN-205ENST00000410096 3793 ntAPPRIS P1 TSL 1 (best) BASIC3.87□□□□□ -1.79
CPSF3Q9UKF6 ANGPTL1-202ENST00000367629 2289 ntAPPRIS P1 TSL 1 (best) BASIC3.87□□□□□ -1.79
CPSF3Q9UKF6 LINC01828-203ENST00000452716 3250 ntTSL 5 BASIC3.87□□□□□ -1.79
CPSF3Q9UKF6 DAOA-201ENST00000329625 1433 ntAPPRIS ALT2 TSL 1 (best) BASIC3.87□□□□□ -1.79
CPSF3Q9UKF6 PPIP5K2-215ENST00000613674 4933 ntAPPRIS ALT2 TSL 2 BASIC3.87□□□□□ -1.79
CPSF3Q9UKF6 ZNF85-201ENST00000300540 1531 ntTSL 1 (best) BASIC3.86□□□□□ -1.79
CPSF3Q9UKF6 AP001350.1-201ENST00000601906 1524 ntBASIC3.86□□□□□ -1.79
CPSF3Q9UKF6 ZNF266-204ENST00000590306 3317 ntAPPRIS P1 TSL 1 (best) BASIC3.86□□□□□ -1.79
CPSF3Q9UKF6 RNU6-283P-201ENST00000364788 107 ntBASIC3.86□□□□□ -1.79
CPSF3Q9UKF6 DFNB59-201ENST00000375129 1202 ntAPPRIS P1 TSL 1 (best) BASIC3.86□□□□□ -1.79
CPSF3Q9UKF6 SNORA51.6-201ENST00000384151 125 ntBASIC3.86□□□□□ -1.79
CPSF3Q9UKF6 RNU6-339P-201ENST00000384310 107 ntBASIC3.86□□□□□ -1.79
CPSF3Q9UKF6 MIR506-201ENST00000384998 124 ntBASIC3.86□□□□□ -1.79
CPSF3Q9UKF6 MIR670-201ENST00000390142 98 ntBASIC3.86□□□□□ -1.79
CPSF3Q9UKF6 RNA5SP171-201ENST00000391071 115 ntBASIC3.86□□□□□ -1.79
CPSF3Q9UKF6 RN7SKP53-201ENST00000411337 315 ntBASIC3.86□□□□□ -1.79
CPSF3Q9UKF6 GRM7-AS1-201ENST00000420230 430 ntTSL 3 BASIC3.86□□□□□ -1.79
CPSF3Q9UKF6 AL031429.1-201ENST00000426775 749 ntTSL 2 BASIC3.86□□□□□ -1.79
CPSF3Q9UKF6 AL365396.1-201ENST00000430854 671 ntBASIC3.86□□□□□ -1.79
CPSF3Q9UKF6 FAR2P1-203ENST00000440931 187 ntTSL 2 BASIC3.86□□□□□ -1.79
CPSF3Q9UKF6 RBMY2UP-201ENST00000453474 324 ntBASIC3.86□□□□□ -1.79
CPSF3Q9UKF6 MTCO3P20-201ENST00000454926 688 ntBASIC3.86□□□□□ -1.79
CPSF3Q9UKF6 PABPC1P3-201ENST00000469174 459 ntBASIC3.86□□□□□ -1.79
CPSF3Q9UKF6 VN1R17P-201ENST00000472048 1090 ntBASIC3.86□□□□□ -1.79
CPSF3Q9UKF6 AC084357.1-201ENST00000473404 255 ntBASIC3.86□□□□□ -1.79
CPSF3Q9UKF6 DNAJC12-205ENST00000483798 769 ntTSL 3 BASIC3.86□□□□□ -1.79
CPSF3Q9UKF6 OR4G11P-201ENST00000492842 939 ntBASIC3.86□□□□□ -1.79
CPSF3Q9UKF6 AC091951.3-201ENST00000504093 246 ntBASIC3.86□□□□□ -1.79
CPSF3Q9UKF6 AC008243.1-202ENST00000506527 481 ntTSL 5 BASIC3.86□□□□□ -1.79
CPSF3Q9UKF6 LINC02201-201ENST00000508992 468 ntTSL 2 BASIC3.86□□□□□ -1.79
CPSF3Q9UKF6 AC103843.2-201ENST00000530523 682 ntBASIC3.86□□□□□ -1.79
CPSF3Q9UKF6 MTCO2P15-201ENST00000532655 656 ntBASIC3.86□□□□□ -1.79
CPSF3Q9UKF6 PLCZ1-203ENST00000534932 525 ntTSL 4 BASIC3.86□□□□□ -1.79
CPSF3Q9UKF6 LINC00508-201ENST00000538901 194 ntTSL 5 BASIC3.86□□□□□ -1.79
CPSF3Q9UKF6 LINC00519-201ENST00000557518 682 ntTSL 2 BASIC3.86□□□□□ -1.79
CPSF3Q9UKF6 LARP7P2-201ENST00000575306 125 ntBASIC3.86□□□□□ -1.79
CPSF3Q9UKF6 CCDC178-211ENST00000581852 876 ntAPPRIS ALT2 TSL 2 BASIC3.86□□□□□ -1.79
CPSF3Q9UKF6 RPL26-207ENST00000583011 524 ntAPPRIS P1 TSL 3 BASIC3.86□□□□□ -1.79
CPSF3Q9UKF6 AL669831.4-202ENST00000590817 238 ntBASIC3.86□□□□□ -1.79
CPSF3Q9UKF6 LINC01255-206ENST00000591431 441 ntTSL 5 BASIC3.86□□□□□ -1.79
CPSF3Q9UKF6 AC011518.1-202ENST00000592668 407 ntTSL 5 BASIC3.86□□□□□ -1.79
CPSF3Q9UKF6 DPRXP5-201ENST00000604662 539 ntBASIC3.86□□□□□ -1.79
CPSF3Q9UKF6 AL451074.6-201ENST00000608512 729 ntBASIC3.86□□□□□ -1.79
CPSF3Q9UKF6 AC112250.2-201ENST00000609450 491 ntTSL 3 BASIC3.86□□□□□ -1.79
CPSF3Q9UKF6 AL392048.1-201ENST00000613946 534 ntBASIC3.86□□□□□ -1.79
CPSF3Q9UKF6 AC231759.1-201ENST00000616455 597 ntBASIC3.86□□□□□ -1.79
CPSF3Q9UKF6 ZNF461-214ENST00000618437 774 ntTSL 5 BASIC3.86□□□□□ -1.79
CPSF3Q9UKF6 AL354696.2-202ENST00000620300 613 ntTSL 2 BASIC3.86□□□□□ -1.79
CPSF3Q9UKF6 MIR6075-201ENST00000620782 95 ntBASIC3.86□□□□□ -1.79
CPSF3Q9UKF6 AC243312.2-201ENST00000623340 601 ntBASIC3.86□□□□□ -1.79
CPSF3Q9UKF6 AP003355.3-201ENST00000623465 114 ntBASIC3.86□□□□□ -1.79
CPSF3Q9UKF6 LINC00976-201ENST00000625513 783 ntTSL 3 BASIC3.86□□□□□ -1.79
CPSF3Q9UKF6 AC012593.1-211ENST00000625996 799 ntTSL 5 BASIC3.86□□□□□ -1.79
CPSF3Q9UKF6 RMDN2-AS1-204ENST00000626669 448 ntTSL 5 BASIC3.86□□□□□ -1.79
CPSF3Q9UKF6 AC244258.1-201ENST00000637553 1071 ntBASIC3.86□□□□□ -1.79
CPSF3Q9UKF6 OR6C71P-202ENST00000641886 1107 ntBASIC3.86□□□□□ -1.79
CPSF3Q9UKF6 RTKN2-201ENST00000315289 2383 ntTSL 2 BASIC3.86□□□□□ -1.79
CPSF3Q9UKF6 CNOT6L-201ENST00000504123 8843 ntAPPRIS P1 TSL 2 BASIC3.86□□□□□ -1.79
CPSF3Q9UKF6 RTTN-201ENST00000255674 6960 ntTSL 5 BASIC3.86□□□□□ -1.79
CPSF3Q9UKF6 SLC10A5P1-201ENST00000379063 1306 ntBASIC3.86□□□□□ -1.79
CPSF3Q9UKF6 PPIG-207ENST00000448752 2498 ntAPPRIS P1 TSL 1 (best) BASIC3.86□□□□□ -1.79
CPSF3Q9UKF6 AF127577.6-201ENST00000623352 2191 ntBASIC3.86□□□□□ -1.79
CPSF3Q9UKF6 NAIP-205ENST00000508426 4153 ntTSL 1 (best) BASIC3.86□□□□□ -1.79
CPSF3Q9UKF6 KIAA0586-215ENST00000619722 5597 ntAPPRIS ALT2 TSL 2 BASIC3.86□□□□□ -1.79
CPSF3Q9UKF6 GLCE-202ENST00000559420 4840 ntTSL 1 (best) BASIC3.86□□□□□ -1.79
CPSF3Q9UKF6 MYOT-202ENST00000421631 1474 ntTSL 2 BASIC3.86□□□□□ -1.79
CPSF3Q9UKF6 AC006504.1-201ENST00000562493 3666 ntBASIC3.85□□□□□ -1.79
CPSF3Q9UKF6 ZNF733P-201ENST00000331425 1506 ntTSL 1 (best) BASIC3.85□□□□□ -1.79
CPSF3Q9UKF6 CSNK1G3-203ENST00000361991 2424 ntAPPRIS P3 TSL 1 (best) BASIC3.85□□□□□ -1.79
CPSF3Q9UKF6 PCLO-206ENST00000437081 3786 ntTSL 1 (best) BASIC3.85□□□□□ -1.79
CPSF3Q9UKF6 TAF7L-201ENST00000324762 2107 ntAPPRIS ALT2 TSL 2 BASIC3.85□□□□□ -1.79
CPSF3Q9UKF6 LINC02475-202ENST00000512678 2622 ntTSL 1 (best) BASIC3.85□□□□□ -1.79
Retrieved 100 of 98,524 protein–RNA pairs in 183.9 ms