Protein–RNA interactions for Protein: Q9UBR4

LHX3, LIM/homeobox protein Lhx3, humanhuman

Predictions only

Length 397 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LHX3Q9UBR4 AC104137.1-201ENST00000503625 385 ntTSL 3 BASIC3.4□□□□□ -1.87
LHX3Q9UBR4 MND1-203ENST00000504860 638 ntTSL 1 (best) BASIC3.4□□□□□ -1.87
LHX3Q9UBR4 AC026719.1-201ENST00000506059 456 ntTSL 3 BASIC3.4□□□□□ -1.87
LHX3Q9UBR4 DTHD1-205ENST00000507598 2606 ntTSL 1 (best) BASIC3.4□□□□□ -1.87
LHX3Q9UBR4 MTCYBP16-201ENST00000509187 1129 ntBASIC3.4□□□□□ -1.87
LHX3Q9UBR4 AC074250.1-201ENST00000511117 192 ntBASIC3.4□□□□□ -1.87
LHX3Q9UBR4 MIR2276-201ENST00000516886 89 ntBASIC3.4□□□□□ -1.87
LHX3Q9UBR4 AC116535.2-201ENST00000532365 441 ntTSL 5 BASIC3.4□□□□□ -1.87
LHX3Q9UBR4 SMILR-201ENST00000533992 553 ntTSL 4 BASIC3.4□□□□□ -1.87
LHX3Q9UBR4 AC074050.1-201ENST00000563247 211 ntBASIC3.4□□□□□ -1.87
LHX3Q9UBR4 LINC02126-202ENST00000563754 750 ntTSL 1 (best) BASIC3.4□□□□□ -1.87
LHX3Q9UBR4 AL157402.2-201ENST00000566394 416 ntTSL 3 BASIC3.4□□□□□ -1.87
LHX3Q9UBR4 ALDH3A2-208ENST00000571163 590 ntTSL 5 BASIC3.4□□□□□ -1.87
LHX3Q9UBR4 AC243829.5-201ENST00000578447 247 ntTSL 5 BASIC3.4□□□□□ -1.87
LHX3Q9UBR4 SRGNP1-201ENST00000603392 451 ntBASIC3.4□□□□□ -1.87
LHX3Q9UBR4 AC103881.1-201ENST00000603476 538 ntBASIC3.4□□□□□ -1.87
LHX3Q9UBR4 AC124312.4-201ENST00000605533 310 ntBASIC3.4□□□□□ -1.87
LHX3Q9UBR4 AC006329.2-201ENST00000611491 394 ntBASIC3.4□□□□□ -1.87
LHX3Q9UBR4 AL138478.1-201ENST00000612252 832 ntBASIC3.4□□□□□ -1.87
LHX3Q9UBR4 AC024257.5-201ENST00000612739 531 ntBASIC3.4□□□□□ -1.87
LHX3Q9UBR4 RDM1-219ENST00000615378 542 ntTSL 3 BASIC3.4□□□□□ -1.87
LHX3Q9UBR4 LINC02246-205ENST00000627623 417 ntTSL 5 BASIC3.4□□□□□ -1.87
LHX3Q9UBR4 MIR4278-201ENST00000636094 69 ntBASIC3.4□□□□□ -1.87
LHX3Q9UBR4 GABRG2-222ENST00000639975 3662 ntTSL 5 BASIC3.4□□□□□ -1.87
LHX3Q9UBR4 AGL-205ENST00000370163 7166 ntAPPRIS P1 TSL 1 (best) BASIC3.4□□□□□ -1.87
LHX3Q9UBR4 AC005550.3-201ENST00000451240 3743 ntTSL 1 (best) BASIC3.4□□□□□ -1.87
LHX3Q9UBR4 OSBPL9P4-201ENST00000371707 1800 ntBASIC3.4□□□□□ -1.87
LHX3Q9UBR4 CR383658.2-201ENST00000547576 1525 ntBASIC3.39□□□□□ -1.87
LHX3Q9UBR4 TARID-205ENST00000607033 2960 ntTSL 1 (best) BASIC3.39□□□□□ -1.87
LHX3Q9UBR4 GABPAP-201ENST00000419271 1356 ntBASIC3.39□□□□□ -1.87
LHX3Q9UBR4 SEL1L2-202ENST00000378072 1892 ntTSL 2 BASIC3.39□□□□□ -1.87
LHX3Q9UBR4 GMFB-208ENST00000554908 6721 ntTSL 1 (best) BASIC3.39□□□□□ -1.87
LHX3Q9UBR4 DIRC1-201ENST00000308100 1037 ntAPPRIS P1 TSL 1 (best) BASIC3.39□□□□□ -1.87
LHX3Q9UBR4 QKI-202ENST00000361195 1063 ntTSL 1 (best) BASIC3.39□□□□□ -1.87
LHX3Q9UBR4 RNA5SP258-201ENST00000362750 119 ntBASIC3.39□□□□□ -1.87
LHX3Q9UBR4 RNU6-1249P-201ENST00000363237 111 ntBASIC3.39□□□□□ -1.87
LHX3Q9UBR4 RNA5SP72-201ENST00000364442 117 ntBASIC3.39□□□□□ -1.87
LHX3Q9UBR4 SNORA51.2-201ENST00000364595 132 ntBASIC3.39□□□□□ -1.87
LHX3Q9UBR4 RNU6-1181P-201ENST00000384191 106 ntBASIC3.39□□□□□ -1.87
LHX3Q9UBR4 MIR506-201ENST00000384998 124 ntBASIC3.39□□□□□ -1.87
LHX3Q9UBR4 MIR34B-201ENST00000385076 84 ntBASIC3.39□□□□□ -1.87
LHX3Q9UBR4 TRAV24-201ENST00000390453 343 ntAPPRIS P1 BASIC3.39□□□□□ -1.87
LHX3Q9UBR4 ARF4P3-201ENST00000397387 509 ntBASIC3.39□□□□□ -1.87
LHX3Q9UBR4 RNU2-37P-201ENST00000410695 177 ntBASIC3.39□□□□□ -1.87
LHX3Q9UBR4 RNU2-42P-201ENST00000410697 113 ntBASIC3.39□□□□□ -1.87
LHX3Q9UBR4 LINC00279-201ENST00000413486 473 ntTSL 3 BASIC3.39□□□□□ -1.87
LHX3Q9UBR4 AC126124.2-201ENST00000413542 321 ntBASIC3.39□□□□□ -1.87
LHX3Q9UBR4 TOMM22P1-201ENST00000418578 312 ntBASIC3.39□□□□□ -1.87
LHX3Q9UBR4 OR1AA1P-201ENST00000419597 916 ntBASIC3.39□□□□□ -1.87
LHX3Q9UBR4 MRPS36P1-201ENST00000421291 307 ntBASIC3.39□□□□□ -1.87
LHX3Q9UBR4 AC013410.2-201ENST00000422627 201 ntBASIC3.39□□□□□ -1.87
LHX3Q9UBR4 GTF2IP23-201ENST00000423746 351 ntBASIC3.39□□□□□ -1.87
LHX3Q9UBR4 NLGN1-AS1-201ENST00000423873 815 ntTSL 3 BASIC3.39□□□□□ -1.87
LHX3Q9UBR4 RPL23AP82-202ENST00000427528 469 ntBASIC3.39□□□□□ -1.87
LHX3Q9UBR4 AL845311.1-201ENST00000444791 891 ntTSL 3 BASIC3.39□□□□□ -1.87
LHX3Q9UBR4 AC074327.1-201ENST00000448017 540 ntTSL 2 BASIC3.39□□□□□ -1.87
LHX3Q9UBR4 AC104781.1-201ENST00000449838 397 ntTSL 3 BASIC3.39□□□□□ -1.87
LHX3Q9UBR4 RPL12P26-201ENST00000452430 487 ntBASIC3.39□□□□□ -1.87
LHX3Q9UBR4 CENPBD1P1-201ENST00000464061 469 ntBASIC3.39□□□□□ -1.87
LHX3Q9UBR4 RPL9P32-201ENST00000464118 620 ntBASIC3.39□□□□□ -1.87
LHX3Q9UBR4 AC092757.1-201ENST00000467293 467 ntBASIC3.39□□□□□ -1.87
LHX3Q9UBR4 TMED11P-201ENST00000479478 690 ntBASIC3.39□□□□□ -1.87
LHX3Q9UBR4 AC108734.3-201ENST00000481241 1165 ntBASIC3.39□□□□□ -1.87
LHX3Q9UBR4 RPL7P38-201ENST00000488396 739 ntBASIC3.39□□□□□ -1.87
LHX3Q9UBR4 AC021678.1-201ENST00000505195 936 ntBASIC3.39□□□□□ -1.87
LHX3Q9UBR4 AC010460.2-201ENST00000509054 677 ntBASIC3.39□□□□□ -1.87
LHX3Q9UBR4 AC107934.2-201ENST00000518653 310 ntBASIC3.39□□□□□ -1.87
LHX3Q9UBR4 NRG1-IT1-202ENST00000521463 742 ntTSL 1 (best) BASIC3.39□□□□□ -1.87
LHX3Q9UBR4 AP002768.1-201ENST00000526741 320 ntTSL 3 BASIC3.39□□□□□ -1.87
LHX3Q9UBR4 LINC01405-202ENST00000547607 674 ntTSL 3 BASIC3.39□□□□□ -1.87
LHX3Q9UBR4 AC011611.1-201ENST00000552179 197 ntBASIC3.39□□□□□ -1.87
LHX3Q9UBR4 AC007686.2-201ENST00000554043 469 ntTSL 2 BASIC3.39□□□□□ -1.87
LHX3Q9UBR4 AC012182.1-201ENST00000570133 895 ntBASIC3.39□□□□□ -1.87
LHX3Q9UBR4 MTND3P13-201ENST00000574391 343 ntBASIC3.39□□□□□ -1.87
LHX3Q9UBR4 AC015908.2-202ENST00000585243 756 ntTSL 3 BASIC3.39□□□□□ -1.87
LHX3Q9UBR4 AC090409.2-202ENST00000585706 604 ntTSL 5 BASIC3.39□□□□□ -1.87
LHX3Q9UBR4 AC011461.1-201ENST00000592671 357 ntTSL 3 BASIC3.39□□□□□ -1.87
LHX3Q9UBR4 VN1R83P-201ENST00000595685 445 ntBASIC3.39□□□□□ -1.87
LHX3Q9UBR4 AC110741.2-201ENST00000605278 268 ntBASIC3.39□□□□□ -1.87
LHX3Q9UBR4 BX664730.1-201ENST00000616196 800 ntTSL 5 BASIC3.39□□□□□ -1.87
LHX3Q9UBR4 AC244472.2-201ENST00000617639 406 ntAPPRIS P1 BASIC3.39□□□□□ -1.87
LHX3Q9UBR4 AC243585.2-201ENST00000619099 508 ntTSL 3 BASIC3.39□□□□□ -1.87
LHX3Q9UBR4 AC092184.1-201ENST00000625042 715 ntBASIC3.39□□□□□ -1.87
LHX3Q9UBR4 LINC00976-201ENST00000625513 783 ntTSL 3 BASIC3.39□□□□□ -1.87
LHX3Q9UBR4 CYP3A51P-201ENST00000633513 256 ntBASIC3.39□□□□□ -1.87
LHX3Q9UBR4 ABBA01000935.2-201ENST00000637477 838 ntBASIC3.39□□□□□ -1.87
LHX3Q9UBR4 PRRG1-202ENST00000449135 4481 ntAPPRIS P1 TSL 1 (best) BASIC3.39□□□□□ -1.87
LHX3Q9UBR4 AC107982.1-201ENST00000507171 1300 ntBASIC3.39□□□□□ -1.87
LHX3Q9UBR4 LINC01247-201ENST00000448901 4209 ntTSL 1 (best) BASIC3.39□□□□□ -1.87
LHX3Q9UBR4 AP001486.2-201ENST00000561652 5113 ntBASIC3.38□□□□□ -1.87
LHX3Q9UBR4 FER-201ENST00000281092 12119 ntAPPRIS P1 TSL 1 (best) BASIC3.38□□□□□ -1.87
LHX3Q9UBR4 WNK3-205ENST00000620763 5400 ntTSL 5 BASIC3.38□□□□□ -1.87
LHX3Q9UBR4 AC058791.1-201ENST00000608412 3198 ntBASIC3.38□□□□□ -1.87
LHX3Q9UBR4 TNP2-201ENST00000312693 626 ntAPPRIS P1 TSL 1 (best) BASIC3.38□□□□□ -1.87
LHX3Q9UBR4 MIR30E-201ENST00000362104 92 ntBASIC3.38□□□□□ -1.87
LHX3Q9UBR4 RNU6-600P-201ENST00000362524 99 ntBASIC3.38□□□□□ -1.87
LHX3Q9UBR4 SNORD46.1-201ENST00000364139 104 ntBASIC3.38□□□□□ -1.87
LHX3Q9UBR4 STATH-202ENST00000381060 534 ntTSL 1 (best) BASIC3.38□□□□□ -1.87
LHX3Q9UBR4 SNORA40.2-201ENST00000390847 128 ntBASIC3.38□□□□□ -1.87
LHX3Q9UBR4 AL138878.1-201ENST00000405131 347 ntBASIC3.38□□□□□ -1.87
Retrieved 100 of 98,524 protein–RNA pairs in 131.5 ms