Protein–RNA interactions for Protein: Q9NXS3

KLHL28, Kelch-like protein 28, humanhuman

Predictions only

Length 571 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
KLHL28Q9NXS3 AL079305.1-201ENST00000623159 3008 ntBASIC3.16□□□□□ -1.9
KLHL28Q9NXS3 DAZ4-201ENST00000382296 2048 ntAPPRIS P5 TSL 5 BASIC3.16□□□□□ -1.9
KLHL28Q9NXS3 MBNL3-204ENST00000370853 2661 ntAPPRIS P4 TSL 1 (best) BASIC3.16□□□□□ -1.9
KLHL28Q9NXS3 RNU6-353P-201ENST00000364266 108 ntBASIC3.16□□□□□ -1.9
KLHL28Q9NXS3 AP002088.1-201ENST00000382740 395 ntBASIC3.16□□□□□ -1.9
KLHL28Q9NXS3 MIR483-201ENST00000385070 76 ntBASIC3.16□□□□□ -1.9
KLHL28Q9NXS3 GSTA8P-201ENST00000404253 637 ntBASIC3.16□□□□□ -1.9
KLHL28Q9NXS3 AL139098.1-201ENST00000407291 389 ntBASIC3.16□□□□□ -1.9
KLHL28Q9NXS3 AL023807.1-201ENST00000407932 359 ntBASIC3.16□□□□□ -1.9
KLHL28Q9NXS3 Z99755.1-201ENST00000414048 380 ntBASIC3.16□□□□□ -1.9
KLHL28Q9NXS3 FNDC1-IT1-201ENST00000419703 516 ntTSL 3 BASIC3.16□□□□□ -1.9
KLHL28Q9NXS3 CYCSP4-201ENST00000429682 331 ntBASIC3.16□□□□□ -1.9
KLHL28Q9NXS3 AC127537.2-201ENST00000439258 465 ntBASIC3.16□□□□□ -1.9
KLHL28Q9NXS3 AC092641.1-201ENST00000440229 772 ntBASIC3.16□□□□□ -1.9
KLHL28Q9NXS3 LINC01698-201ENST00000443636 727 ntTSL 3 BASIC3.16□□□□□ -1.9
KLHL28Q9NXS3 NRG3-AS1-201ENST00000448936 555 ntTSL 2 BASIC3.16□□□□□ -1.9
KLHL28Q9NXS3 AC078883.3-201ENST00000458314 512 ntTSL 2 BASIC3.16□□□□□ -1.9
KLHL28Q9NXS3 AC026347.1-201ENST00000463255 474 ntTSL 3 BASIC3.16□□□□□ -1.9
KLHL28Q9NXS3 RPL21P10-201ENST00000463521 490 ntBASIC3.16□□□□□ -1.9
KLHL28Q9NXS3 NDUFA6-201ENST00000470753 475 ntTSL 2 BASIC3.16□□□□□ -1.9
KLHL28Q9NXS3 RPL7P5-201ENST00000471472 736 ntBASIC3.16□□□□□ -1.9
KLHL28Q9NXS3 VPS26AP1-201ENST00000483197 979 ntBASIC3.16□□□□□ -1.9
KLHL28Q9NXS3 PAIP2-205ENST00000510080 858 ntAPPRIS P1 TSL 1 (best) BASIC3.16□□□□□ -1.9
KLHL28Q9NXS3 AC109471.1-201ENST00000511631 612 ntBASIC3.16□□□□□ -1.9
KLHL28Q9NXS3 AC021736.1-201ENST00000521143 563 ntTSL 4 BASIC3.16□□□□□ -1.9
KLHL28Q9NXS3 AC011131.1-201ENST00000521224 252 ntTSL 2 BASIC3.16□□□□□ -1.9
KLHL28Q9NXS3 CDKL3-207ENST00000521755 586 ntTSL 5 BASIC3.16□□□□□ -1.9
KLHL28Q9NXS3 AC103952.1-201ENST00000521872 590 ntTSL 3 BASIC3.16□□□□□ -1.9
KLHL28Q9NXS3 ZNF705CP-201ENST00000530515 889 ntBASIC3.16□□□□□ -1.9
KLHL28Q9NXS3 AP002833.1-201ENST00000530572 566 ntTSL 3 BASIC3.16□□□□□ -1.9
KLHL28Q9NXS3 REXO2-218ENST00000544827 880 ntTSL 3 BASIC3.16□□□□□ -1.9
KLHL28Q9NXS3 AC092120.1-201ENST00000562211 420 ntTSL 3 BASIC3.16□□□□□ -1.9
KLHL28Q9NXS3 AC090506.1-201ENST00000583089 572 ntTSL 4 BASIC3.16□□□□□ -1.9
KLHL28Q9NXS3 AC004832.5-201ENST00000608677 401 ntBASIC3.16□□□□□ -1.9
KLHL28Q9NXS3 IL21-202ENST00000611104 707 ntAPPRIS ALT2 TSL 1 (best) BASIC3.16□□□□□ -1.9
KLHL28Q9NXS3 ZNF461-214ENST00000618437 774 ntTSL 5 BASIC3.16□□□□□ -1.9
KLHL28Q9NXS3 INPP4B-223ENST00000630044 354 ntTSL 5 BASIC3.16□□□□□ -1.9
KLHL28Q9NXS3 ABBA01000935.2-201ENST00000637477 838 ntBASIC3.16□□□□□ -1.9
KLHL28Q9NXS3 CHM-205ENST00000615443 2821 ntTSL 1 (best) BASIC3.16□□□□□ -1.9
KLHL28Q9NXS3 DNAH12-208ENST00000495027 12146 ntAPPRIS P1 TSL 5 BASIC3.16□□□□□ -1.9
KLHL28Q9NXS3 MIPOL1-206ENST00000545536 2073 ntTSL 5 BASIC3.16□□□□□ -1.9
KLHL28Q9NXS3 AC244517.1-201ENST00000606030 2086 ntBASIC3.16□□□□□ -1.9
KLHL28Q9NXS3 AC073346.2-201ENST00000624724 2058 ntBASIC3.16□□□□□ -1.9
KLHL28Q9NXS3 PPHLN1-208ENST00000449194 1583 ntAPPRIS ALT1 TSL 1 (best) BASIC3.16□□□□□ -1.9
KLHL28Q9NXS3 FRS2-201ENST00000397997 6550 ntAPPRIS P1 TSL 5 BASIC3.16□□□□□ -1.9
KLHL28Q9NXS3 NT5C3A-202ENST00000381626 1909 ntAPPRIS ALT1 TSL 5 BASIC3.15□□□□□ -1.9
KLHL28Q9NXS3 AC111188.2-201ENST00000529697 1387 ntBASIC3.15□□□□□ -1.9
KLHL28Q9NXS3 C1D-201ENST00000355848 2233 ntAPPRIS P1 TSL 1 (best) BASIC3.15□□□□□ -1.9
KLHL28Q9NXS3 ATF2-204ENST00000409437 3697 ntTSL 5 BASIC3.15□□□□□ -1.91
KLHL28Q9NXS3 AL133384.1-201ENST00000412744 351 ntBASIC3.15□□□□□ -1.91
KLHL28Q9NXS3 AL078645.1-201ENST00000414377 423 ntTSL 3 BASIC3.15□□□□□ -1.91
KLHL28Q9NXS3 RPL31P54-201ENST00000429803 370 ntBASIC3.15□□□□□ -1.91
KLHL28Q9NXS3 RPL23AP16-201ENST00000441715 421 ntBASIC3.15□□□□□ -1.91
KLHL28Q9NXS3 AC012070.1-201ENST00000442062 427 ntTSL 3 BASIC3.15□□□□□ -1.91
KLHL28Q9NXS3 MOB1AP2-201ENST00000446060 614 ntBASIC3.15□□□□□ -1.91
KLHL28Q9NXS3 AC007557.1-201ENST00000451711 541 ntTSL 2 BASIC3.15□□□□□ -1.91
KLHL28Q9NXS3 MTCO3P2-201ENST00000457365 171 ntBASIC3.15□□□□□ -1.91
KLHL28Q9NXS3 AC104472.2-201ENST00000469035 601 ntBASIC3.15□□□□□ -1.91
KLHL28Q9NXS3 PABPC1P3-201ENST00000469174 459 ntBASIC3.15□□□□□ -1.91
KLHL28Q9NXS3 AC112198.1-201ENST00000505369 1220 ntBASIC3.15□□□□□ -1.91
KLHL28Q9NXS3 AC026427.2-201ENST00000506228 536 ntBASIC3.15□□□□□ -1.91
KLHL28Q9NXS3 OTUD4-208ENST00000509620 864 ntTSL 1 (best) BASIC3.15□□□□□ -1.91
KLHL28Q9NXS3 AC090833.1-202ENST00000511073 781 ntTSL 3 BASIC3.15□□□□□ -1.91
KLHL28Q9NXS3 MEF2C-AS1-212ENST00000514158 713 ntTSL 5 BASIC3.15□□□□□ -1.91
KLHL28Q9NXS3 ERHP1-201ENST00000523006 310 ntBASIC3.15□□□□□ -1.91
KLHL28Q9NXS3 ARL2BPP5-201ENST00000523141 481 ntBASIC3.15□□□□□ -1.91
KLHL28Q9NXS3 AP000442.2-202ENST00000531311 601 ntTSL 3 BASIC3.15□□□□□ -1.91
KLHL28Q9NXS3 CERS3-AS1-202ENST00000560718 432 ntTSL 3 BASIC3.15□□□□□ -1.91
KLHL28Q9NXS3 AL845331.3-202ENST00000562856 261 ntBASIC3.15□□□□□ -1.91
KLHL28Q9NXS3 AC120045.1-201ENST00000563502 251 ntTSL 3 BASIC3.15□□□□□ -1.91
KLHL28Q9NXS3 AC139426.2-201ENST00000568289 251 ntTSL 3 BASIC3.15□□□□□ -1.91
KLHL28Q9NXS3 AC092364.1-201ENST00000598561 471 ntTSL 3 BASIC3.15□□□□□ -1.91
KLHL28Q9NXS3 AC092474.3-201ENST00000603022 568 ntBASIC3.15□□□□□ -1.91
KLHL28Q9NXS3 AC098483.2-201ENST00000603158 454 ntBASIC3.15□□□□□ -1.91
KLHL28Q9NXS3 AL355376.2-201ENST00000603866 267 ntTSL 5 BASIC3.15□□□□□ -1.91
KLHL28Q9NXS3 AC002487.1-201ENST00000604565 994 ntBASIC3.15□□□□□ -1.91
KLHL28Q9NXS3 AC006329.2-201ENST00000611491 394 ntBASIC3.15□□□□□ -1.91
KLHL28Q9NXS3 AC002076.2-201ENST00000617362 122 ntBASIC3.15□□□□□ -1.91
KLHL28Q9NXS3 AC244517.5-201ENST00000624139 722 ntTSL 3 BASIC3.15□□□□□ -1.91
KLHL28Q9NXS3 AC098617.1-218ENST00000628836 624 ntTSL 5 BASIC3.15□□□□□ -1.91
KLHL28Q9NXS3 BX649567.1-201ENST00000642071 1134 ntBASIC3.15□□□□□ -1.91
KLHL28Q9NXS3 PRB2-201ENST00000389362 1429 ntAPPRIS P2 TSL 5 BASIC3.15□□□□□ -1.91
KLHL28Q9NXS3 CCDC30-212ENST00000507855 2445 ntAPPRIS ALT2 TSL 1 (best) BASIC3.15□□□□□ -1.91
KLHL28Q9NXS3 NBPF20-202ENST00000392971 18450 ntAPPRIS P2 TSL 5 BASIC3.15□□□□□ -1.91
KLHL28Q9NXS3 UFM1-201ENST00000239878 3138 ntAPPRIS P1 TSL 1 (best) BASIC3.15□□□□□ -1.91
KLHL28Q9NXS3 OR9G4-204ENST00000641668 2608 ntAPPRIS P1 BASIC3.14□□□□□ -1.91
KLHL28Q9NXS3 THEMIS-201ENST00000368248 3866 ntAPPRIS P3 TSL 1 (best) BASIC3.14□□□□□ -1.91
KLHL28Q9NXS3 ZNF807-201ENST00000328088 1707 ntBASIC3.14□□□□□ -1.91
KLHL28Q9NXS3 IFNG-201ENST00000229135 1218 ntAPPRIS P1 TSL 1 (best) BASIC3.14□□□□□ -1.91
KLHL28Q9NXS3 OR10A7-201ENST00000326258 951 ntAPPRIS P1 BASIC3.14□□□□□ -1.91
KLHL28Q9NXS3 OR5V1-215ENST00000377154 1266 ntAPPRIS P1 BASIC3.14□□□□□ -1.91
KLHL28Q9NXS3 SNORA9-201ENST00000384215 133 ntBASIC3.14□□□□□ -1.91
KLHL28Q9NXS3 RNU6-549P-201ENST00000384433 107 ntBASIC3.14□□□□□ -1.91
KLHL28Q9NXS3 RPL17P50-201ENST00000396131 546 ntBASIC3.14□□□□□ -1.91
KLHL28Q9NXS3 TMSB4XP8-201ENST00000402089 135 ntBASIC3.14□□□□□ -1.91
KLHL28Q9NXS3 RN7SKP111-201ENST00000410349 271 ntBASIC3.14□□□□□ -1.91
KLHL28Q9NXS3 RNA5SP31-201ENST00000411144 127 ntBASIC3.14□□□□□ -1.91
KLHL28Q9NXS3 LINC01201-201ENST00000412420 294 ntTSL 3 BASIC3.14□□□□□ -1.91
KLHL28Q9NXS3 UBE2Q2P12-201ENST00000414573 204 ntBASIC3.14□□□□□ -1.91
KLHL28Q9NXS3 AC019064.1-201ENST00000414796 499 ntTSL 2 BASIC3.14□□□□□ -1.91
Retrieved 100 of 98,524 protein–RNA pairs in 74.9 ms