Protein–RNA interactions for Protein: Q9BQI4

CCDC3, Coiled-coil domain-containing protein 3, humanhuman

Predictions only

Length 270 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3Q9BQI4 MMP2-AS1-201ENST00000565307 593 ntTSL 4 BASIC3.64□□□□□ -1.83
CCDC3Q9BQI4 AC022166.2-201ENST00000566030 536 ntTSL 4 BASIC3.64□□□□□ -1.83
CCDC3Q9BQI4 AC090403.1-205ENST00000580883 516 ntTSL 2 BASIC3.64□□□□□ -1.83
CCDC3Q9BQI4 AC025682.1-201ENST00000582389 437 ntTSL 5 BASIC3.64□□□□□ -1.83
CCDC3Q9BQI4 MIR4637-201ENST00000582405 84 ntBASIC3.64□□□□□ -1.83
CCDC3Q9BQI4 AC105094.2-203ENST00000590357 555 ntTSL 4 BASIC3.64□□□□□ -1.83
CCDC3Q9BQI4 AC006557.3-201ENST00000592926 517 ntTSL 3 BASIC3.64□□□□□ -1.83
CCDC3Q9BQI4 VN1R78P-201ENST00000597393 564 ntBASIC3.64□□□□□ -1.83
CCDC3Q9BQI4 NIFKP6-201ENST00000598115 845 ntBASIC3.64□□□□□ -1.83
CCDC3Q9BQI4 RPL23AP92-201ENST00000603609 255 ntBASIC3.64□□□□□ -1.83
CCDC3Q9BQI4 AC110741.2-201ENST00000605278 268 ntBASIC3.64□□□□□ -1.83
CCDC3Q9BQI4 AC131235.4-201ENST00000609288 620 ntBASIC3.64□□□□□ -1.83
CCDC3Q9BQI4 AC092650.2-201ENST00000619984 902 ntBASIC3.64□□□□□ -1.83
CCDC3Q9BQI4 AC091953.5-201ENST00000622919 233 ntBASIC3.64□□□□□ -1.83
CCDC3Q9BQI4 AC006065.5-201ENST00000623427 349 ntBASIC3.64□□□□□ -1.83
CCDC3Q9BQI4 FP475955.2-201ENST00000623720 458 ntTSL 2 BASIC3.64□□□□□ -1.83
CCDC3Q9BQI4 AC116618.1-201ENST00000634617 774 ntBASIC3.64□□□□□ -1.83
CCDC3Q9BQI4 CCNYL2-203ENST00000638057 730 ntTSL 3 BASIC3.64□□□□□ -1.83
CCDC3Q9BQI4 RIMS1-206ENST00000425662 2799 ntTSL 1 (best) BASIC3.64□□□□□ -1.83
CCDC3Q9BQI4 LRRC49-222ENST00000560158 1898 ntTSL 5 BASIC3.64□□□□□ -1.83
CCDC3Q9BQI4 CCDC178-205ENST00000406524 3039 ntAPPRIS ALT2 TSL 5 BASIC3.64□□□□□ -1.83
CCDC3Q9BQI4 GDI2P1-201ENST00000429312 1336 ntBASIC3.64□□□□□ -1.83
CCDC3Q9BQI4 RNF17-201ENST00000255324 5119 ntAPPRIS P1 TSL 2 BASIC3.64□□□□□ -1.83
CCDC3Q9BQI4 ZNF734P-201ENST00000419494 1534 ntBASIC3.64□□□□□ -1.83
CCDC3Q9BQI4 ABCD2-201ENST00000308666 6238 ntAPPRIS P1 TSL 1 (best) BASIC3.64□□□□□ -1.83
CCDC3Q9BQI4 ZNF594-201ENST00000399604 4862 ntAPPRIS P1 BASIC3.63□□□□□ -1.83
CCDC3Q9BQI4 AC104454.1-201ENST00000421341 1401 ntBASIC3.63□□□□□ -1.83
CCDC3Q9BQI4 AC020571.1-202ENST00000433933 1413 ntTSL 1 (best) BASIC3.63□□□□□ -1.83
CCDC3Q9BQI4 CCDC169-201ENST00000239859 708 ntAPPRIS P1 TSL 5 BASIC3.63□□□□□ -1.83
CCDC3Q9BQI4 GNGT1-201ENST00000248572 720 ntAPPRIS P1 TSL 1 (best) BASIC3.63□□□□□ -1.83
CCDC3Q9BQI4 STARD6-201ENST00000307844 663 ntAPPRIS P1 TSL 1 (best) BASIC3.63□□□□□ -1.83
CCDC3Q9BQI4 OR2AP1-201ENST00000321688 930 ntAPPRIS P1 BASIC3.63□□□□□ -1.83
CCDC3Q9BQI4 RNU6-931P-201ENST00000363850 107 ntBASIC3.63□□□□□ -1.83
CCDC3Q9BQI4 DFNB59-201ENST00000375129 1202 ntAPPRIS P1 TSL 1 (best) BASIC3.63□□□□□ -1.83
CCDC3Q9BQI4 CUBN-201ENST00000377823 705 ntTSL 3 BASIC3.63□□□□□ -1.83
CCDC3Q9BQI4 RNU6-1122P-201ENST00000384449 107 ntBASIC3.63□□□□□ -1.83
CCDC3Q9BQI4 AC245052.5-201ENST00000416320 649 ntBASIC3.63□□□□□ -1.83
CCDC3Q9BQI4 VPS26BP1-201ENST00000417155 755 ntBASIC3.63□□□□□ -1.83
CCDC3Q9BQI4 AL031429.1-201ENST00000426775 749 ntTSL 2 BASIC3.63□□□□□ -1.83
CCDC3Q9BQI4 TAB3-AS1-201ENST00000428263 245 ntTSL 5 BASIC3.63□□□□□ -1.83
CCDC3Q9BQI4 AL162725.2-201ENST00000430545 748 ntTSL 5 BASIC3.63□□□□□ -1.83
CCDC3Q9BQI4 AC011742.1-201ENST00000431448 434 ntBASIC3.63□□□□□ -1.83
CCDC3Q9BQI4 ATP5HP2-201ENST00000433885 485 ntBASIC3.63□□□□□ -1.83
CCDC3Q9BQI4 AL008629.1-201ENST00000438615 184 ntBASIC3.63□□□□□ -1.83
CCDC3Q9BQI4 RPL23AP33-201ENST00000442301 452 ntBASIC3.63□□□□□ -1.83
CCDC3Q9BQI4 AL161937.1-201ENST00000444478 425 ntTSL 3 BASIC3.63□□□□□ -1.83
CCDC3Q9BQI4 AL590399.6-201ENST00000446396 307 ntBASIC3.63□□□□□ -1.83
CCDC3Q9BQI4 VN1R10P-201ENST00000447106 875 ntBASIC3.63□□□□□ -1.83
CCDC3Q9BQI4 RPL39P6-201ENST00000448289 150 ntBASIC3.63□□□□□ -1.83
CCDC3Q9BQI4 RSL24D1P3-201ENST00000449255 495 ntBASIC3.63□□□□□ -1.83
CCDC3Q9BQI4 CYCSP35-201ENST00000451978 304 ntBASIC3.63□□□□□ -1.83
CCDC3Q9BQI4 USP9YP10-201ENST00000454868 628 ntBASIC3.63□□□□□ -1.83
CCDC3Q9BQI4 MTCO3P11-201ENST00000455103 774 ntBASIC3.63□□□□□ -1.83
CCDC3Q9BQI4 LINC01510-203ENST00000458082 626 ntTSL 3 BASIC3.63□□□□□ -1.83
CCDC3Q9BQI4 AC010789.1-201ENST00000458489 291 ntTSL 5 BASIC3.63□□□□□ -1.83
CCDC3Q9BQI4 AP000873.1-201ENST00000463987 400 ntBASIC3.63□□□□□ -1.83
CCDC3Q9BQI4 PABPC1P3-201ENST00000469174 459 ntBASIC3.63□□□□□ -1.83
CCDC3Q9BQI4 LRRC70-203ENST00000491184 703 ntTSL 3 BASIC3.63□□□□□ -1.83
CCDC3Q9BQI4 OR5H5P-201ENST00000503164 928 ntBASIC3.63□□□□□ -1.83
CCDC3Q9BQI4 AC021146.8-201ENST00000507455 733 ntBASIC3.63□□□□□ -1.83
CCDC3Q9BQI4 AC074250.1-201ENST00000511117 192 ntBASIC3.63□□□□□ -1.83
CCDC3Q9BQI4 USP9YP5-201ENST00000511770 630 ntBASIC3.63□□□□□ -1.83
CCDC3Q9BQI4 AC110751.1-201ENST00000511916 462 ntTSL 3 BASIC3.63□□□□□ -1.83
CCDC3Q9BQI4 SUB1-211ENST00000512913 684 ntAPPRIS P1 TSL 2 BASIC3.63□□□□□ -1.83
CCDC3Q9BQI4 AC092542.1-201ENST00000513155 355 ntTSL 2 BASIC3.63□□□□□ -1.83
CCDC3Q9BQI4 FTH1P9-201ENST00000513251 355 ntBASIC3.63□□□□□ -1.83
CCDC3Q9BQI4 HIGD1AP3-201ENST00000515857 278 ntBASIC3.63□□□□□ -1.83
CCDC3Q9BQI4 AC025524.2-207ENST00000520097 506 ntTSL 3 BASIC3.63□□□□□ -1.83
CCDC3Q9BQI4 OR5AK1P-201ENST00000524837 922 ntBASIC3.63□□□□□ -1.83
CCDC3Q9BQI4 DUXAP6-201ENST00000553858 601 ntBASIC3.63□□□□□ -1.83
CCDC3Q9BQI4 AC006960.3-201ENST00000561845 705 ntBASIC3.63□□□□□ -1.83
CCDC3Q9BQI4 AC090616.5-201ENST00000581225 299 ntTSL 5 BASIC3.63□□□□□ -1.83
CCDC3Q9BQI4 BNIP3P24-201ENST00000593398 557 ntBASIC3.63□□□□□ -1.83
CCDC3Q9BQI4 YWHAQP7-201ENST00000603536 658 ntBASIC3.63□□□□□ -1.83
CCDC3Q9BQI4 AL139395.1-201ENST00000603662 160 ntBASIC3.63□□□□□ -1.83
CCDC3Q9BQI4 AC112220.3-201ENST00000605502 502 ntBASIC3.63□□□□□ -1.83
CCDC3Q9BQI4 RNU1-30P-201ENST00000606575 163 ntBASIC3.63□□□□□ -1.83
CCDC3Q9BQI4 AC099566.1-205ENST00000609411 657 ntTSL 5 BASIC3.63□□□□□ -1.83
CCDC3Q9BQI4 MSANTD4-206ENST00000617528 508 ntTSL 5 BASIC3.63□□□□□ -1.83
CCDC3Q9BQI4 AC092184.1-201ENST00000625042 715 ntBASIC3.63□□□□□ -1.83
CCDC3Q9BQI4 AC119674.1-207ENST00000641355 633 ntBASIC3.63□□□□□ -1.83
CCDC3Q9BQI4 GLCE-202ENST00000559420 4840 ntTSL 1 (best) BASIC3.63□□□□□ -1.83
CCDC3Q9BQI4 WDR72-201ENST00000360509 5887 ntAPPRIS P2 TSL 1 (best) BASIC3.63□□□□□ -1.83
CCDC3Q9BQI4 TDRD1-202ENST00000369280 4062 ntAPPRIS ALT2 TSL 5 BASIC3.63□□□□□ -1.83
CCDC3Q9BQI4 PRRG1-202ENST00000449135 4481 ntAPPRIS P1 TSL 1 (best) BASIC3.62□□□□□ -1.83
CCDC3Q9BQI4 RAD17-208ENST00000380774 2117 ntAPPRIS P1 TSL 1 (best) BASIC3.62□□□□□ -1.83
CCDC3Q9BQI4 AL353746.1-201ENST00000566293 6881 ntBASIC3.62□□□□□ -1.83
CCDC3Q9BQI4 DICER1-203ENST00000526495 10331 ntAPPRIS P1 TSL 5 BASIC3.62□□□□□ -1.83
CCDC3Q9BQI4 BDP1P-201ENST00000582658 1990 ntBASIC3.62□□□□□ -1.83
CCDC3Q9BQI4 LRRC39-204ENST00000620882 1951 ntTSL 5 BASIC3.62□□□□□ -1.83
CCDC3Q9BQI4 SLCO1B1-201ENST00000256958 2229 ntAPPRIS P1 TSL 1 (best) BASIC3.62□□□□□ -1.83
CCDC3Q9BQI4 COX7B2-201ENST00000355591 542 ntAPPRIS P2 TSL 1 (best) BASIC3.62□□□□□ -1.83
CCDC3Q9BQI4 AIF1-202ENST00000376049 524 ntTSL 1 (best) BASIC3.62□□□□□ -1.83
CCDC3Q9BQI4 RNU6-657P-201ENST00000383904 107 ntBASIC3.62□□□□□ -1.83
CCDC3Q9BQI4 SNORA9-201ENST00000384215 133 ntBASIC3.62□□□□□ -1.83
CCDC3Q9BQI4 MIR483-201ENST00000385070 76 ntBASIC3.62□□□□□ -1.83
CCDC3Q9BQI4 ARF4P3-201ENST00000397387 509 ntBASIC3.62□□□□□ -1.83
CCDC3Q9BQI4 NAP1L1P2-201ENST00000414182 1089 ntBASIC3.62□□□□□ -1.83
CCDC3Q9BQI4 AC005005.2-201ENST00000420779 380 ntBASIC3.62□□□□□ -1.83
CCDC3Q9BQI4 AC092832.1-201ENST00000422934 400 ntBASIC3.62□□□□□ -1.83
Retrieved 100 of 98,524 protein–RNA pairs in 167.3 ms