Protein–RNA interactions for Protein: Q99567

NUP88, Nuclear pore complex protein Nup88, humanhuman

Predicted RBP Predictions only

Length 741 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88Q99567 AC079070.1-201ENST00000578740 555 ntTSL 2 BASIC4.87□□□□□ -1.63
NUP88Q99567 AC024267.4-202ENST00000582631 436 ntTSL 2 BASIC4.87□□□□□ -1.63
NUP88Q99567 AC090227.2-201ENST00000591105 340 ntTSL 5 BASIC4.87□□□□□ -1.63
NUP88Q99567 TPMTP1-201ENST00000592307 737 ntBASIC4.87□□□□□ -1.63
NUP88Q99567 RPS4XP16-203ENST00000596904 698 ntTSL 5 BASIC4.87□□□□□ -1.63
NUP88Q99567 AP000403.1-201ENST00000603349 851 ntBASIC4.87□□□□□ -1.63
NUP88Q99567 AC010680.4-201ENST00000605334 543 ntBASIC4.87□□□□□ -1.63
NUP88Q99567 RNU4-89P-201ENST00000607443 133 ntBASIC4.87□□□□□ -1.63
NUP88Q99567 DLEU2_1.1-201ENST00000612089 120 ntBASIC4.87□□□□□ -1.63
NUP88Q99567 DLEU2_1.2-201ENST00000614667 120 ntBASIC4.87□□□□□ -1.63
NUP88Q99567 AC131238.1-201ENST00000617135 328 ntBASIC4.87□□□□□ -1.63
NUP88Q99567 DCAF13P1-201ENST00000495256 1330 ntBASIC4.87□□□□□ -1.63
NUP88Q99567 CACNB4-233ENST00000636773 4143 ntTSL 5 BASIC4.87□□□□□ -1.63
NUP88Q99567 LINC01109-201ENST00000603837 3081 ntBASIC4.87□□□□□ -1.63
NUP88Q99567 LINC00862-201ENST00000367355 1417 ntTSL 1 (best) BASIC4.87□□□□□ -1.63
NUP88Q99567 AKT3-201ENST00000263826 7081 ntAPPRIS P1 TSL 1 (best) BASIC4.87□□□□□ -1.63
NUP88Q99567 LINC02493-201ENST00000509964 1704 ntTSL 1 (best) BASIC4.86□□□□□ -1.63
NUP88Q99567 AC010132.3-201ENST00000442788 2430 ntAPPRIS P5 TSL 5 BASIC4.86□□□□□ -1.63
NUP88Q99567 AC006378.2-201ENST00000623178 2476 ntBASIC4.86□□□□□ -1.63
NUP88Q99567 RGS21-201ENST00000417209 1794 ntAPPRIS P1 TSL 1 (best) BASIC4.86□□□□□ -1.63
NUP88Q99567 ARHGEF38-202ENST00000420470 5454 ntAPPRIS P1 TSL 5 BASIC4.86□□□□□ -1.63
NUP88Q99567 FAM107B-229ENST00000622567 3510 ntAPPRIS P1 TSL 2 BASIC4.86□□□□□ -1.63
NUP88Q99567 OR11H4-201ENST00000315409 1082 ntBASIC4.86□□□□□ -1.63
NUP88Q99567 MT-ND3-201ENST00000361227 346 ntAPPRIS P1 BASIC4.86□□□□□ -1.63
NUP88Q99567 RNU6-263P-201ENST00000363811 107 ntBASIC4.86□□□□□ -1.63
NUP88Q99567 RNU6-343P-201ENST00000364709 104 ntBASIC4.86□□□□□ -1.63
NUP88Q99567 RNU5E-5P-201ENST00000365379 116 ntBASIC4.86□□□□□ -1.63
NUP88Q99567 OR5H15-201ENST00000383696 930 ntBASIC4.86□□□□□ -1.63
NUP88Q99567 RNU6-761P-201ENST00000384148 107 ntBASIC4.86□□□□□ -1.63
NUP88Q99567 AL356421.1-201ENST00000403255 413 ntBASIC4.86□□□□□ -1.63
NUP88Q99567 LINC00894-201ENST00000413076 403 ntTSL 3 BASIC4.86□□□□□ -1.63
NUP88Q99567 AL589642.2-201ENST00000413291 839 ntTSL 3 BASIC4.86□□□□□ -1.63
NUP88Q99567 CR769775.2-201ENST00000417850 891 ntTSL 3 BASIC4.86□□□□□ -1.63
NUP88Q99567 AC006366.1-201ENST00000422002 759 ntBASIC4.86□□□□□ -1.63
NUP88Q99567 AC004160.1-205ENST00000428967 577 ntTSL 4 BASIC4.86□□□□□ -1.63
NUP88Q99567 REG1CP-203ENST00000434852 460 ntTSL 4 BASIC4.86□□□□□ -1.63
NUP88Q99567 UPP2-IT1-201ENST00000439185 357 ntTSL 3 BASIC4.86□□□□□ -1.63
NUP88Q99567 LINC01317-202ENST00000442026 677 ntTSL 3 BASIC4.86□□□□□ -1.63
NUP88Q99567 PDSS1P2-201ENST00000449397 678 ntBASIC4.86□□□□□ -1.63
NUP88Q99567 AL392086.1-201ENST00000457632 299 ntTSL 3 BASIC4.86□□□□□ -1.63
NUP88Q99567 TXNP6-201ENST00000510190 310 ntBASIC4.86□□□□□ -1.63
NUP88Q99567 PTGES3P3-201ENST00000511479 482 ntBASIC4.86□□□□□ -1.63
NUP88Q99567 AP003385.6-201ENST00000531603 374 ntBASIC4.86□□□□□ -1.63
NUP88Q99567 KIRREL3-AS2-201ENST00000532988 492 ntTSL 1 (best) BASIC4.86□□□□□ -1.63
NUP88Q99567 AC034105.4-201ENST00000568304 277 ntBASIC4.86□□□□□ -1.63
NUP88Q99567 AC129492.2-201ENST00000577807 517 ntTSL 3 BASIC4.86□□□□□ -1.63
NUP88Q99567 AP005121.1-201ENST00000578243 469 ntTSL 3 BASIC4.86□□□□□ -1.63
NUP88Q99567 MIR4307-201ENST00000582802 84 ntBASIC4.86□□□□□ -1.63
NUP88Q99567 AP005380.1-201ENST00000584896 547 ntTSL 4 BASIC4.86□□□□□ -1.63
NUP88Q99567 AC233280.2-201ENST00000603917 1070 ntBASIC4.86□□□□□ -1.63
NUP88Q99567 AC087752.4-201ENST00000605911 462 ntBASIC4.86□□□□□ -1.63
NUP88Q99567 AC013727.1-201ENST00000618581 839 ntTSL 5 BASIC4.86□□□□□ -1.63
NUP88Q99567 AL596220.1-201ENST00000622121 542 ntTSL 4 BASIC4.86□□□□□ -1.63
NUP88Q99567 ATXN3L-202ENST00000622204 837 ntTSL 5 BASIC4.86□□□□□ -1.63
NUP88Q99567 AC040168.1-201ENST00000623594 991 ntBASIC4.86□□□□□ -1.63
NUP88Q99567 OR11H4-203ENST00000641525 1082 ntAPPRIS P1 BASIC4.86□□□□□ -1.63
NUP88Q99567 BTAF1-204ENST00000544642 6938 ntAPPRIS ALT1 TSL 5 BASIC4.86□□□□□ -1.63
NUP88Q99567 OR2L5-201ENST00000355281 2429 ntAPPRIS P1 BASIC4.86□□□□□ -1.63
NUP88Q99567 ATF7IP2-202ENST00000356427 3463 ntAPPRIS P1 TSL 1 (best) BASIC4.86□□□□□ -1.63
NUP88Q99567 AC021355.1-202ENST00000519996 1633 ntTSL 2 BASIC4.86□□□□□ -1.63
NUP88Q99567 PANK1-203ENST00000342512 2703 ntAPPRIS P1 TSL 1 (best) BASIC4.86□□□□□ -1.63
NUP88Q99567 GABRB2-203ENST00000393959 7191 ntTSL 1 (best) BASIC4.86□□□□□ -1.63
NUP88Q99567 BBX-203ENST00000402543 3980 ntTSL 5 BASIC4.86□□□□□ -1.63
NUP88Q99567 PJA2-202ENST00000361557 4645 ntAPPRIS P1 TSL 2 BASIC4.85□□□□□ -1.63
NUP88Q99567 LARP4-202ENST00000347328 3621 ntTSL 1 (best) BASIC4.85□□□□□ -1.63
NUP88Q99567 RNU4-91P-201ENST00000364778 135 ntBASIC4.85□□□□□ -1.63
NUP88Q99567 RNU4-78P-201ENST00000410940 126 ntBASIC4.85□□□□□ -1.63
NUP88Q99567 RPS7P13-201ENST00000413955 498 ntBASIC4.85□□□□□ -1.63
NUP88Q99567 AC019064.1-201ENST00000414796 499 ntTSL 2 BASIC4.85□□□□□ -1.63
NUP88Q99567 AC108032.1-201ENST00000416706 207 ntBASIC4.85□□□□□ -1.63
NUP88Q99567 RPS12P23-201ENST00000419579 400 ntBASIC4.85□□□□□ -1.63
NUP88Q99567 RPS12P5-201ENST00000423449 371 ntBASIC4.85□□□□□ -1.63
NUP88Q99567 SLC44A3-AS1-205ENST00000424505 612 ntBASIC4.85□□□□□ -1.63
NUP88Q99567 BBS9-205ENST00000425508 1252 ntTSL 1 (best) BASIC4.85□□□□□ -1.63
NUP88Q99567 AC007742.1-201ENST00000425789 329 ntBASIC4.85□□□□□ -1.63
NUP88Q99567 LAMTOR3P1-201ENST00000428620 370 ntBASIC4.85□□□□□ -1.63
NUP88Q99567 MTCYBP45-201ENST00000435243 565 ntBASIC4.85□□□□□ -1.63
NUP88Q99567 ELOCP26-201ENST00000436067 329 ntBASIC4.85□□□□□ -1.63
NUP88Q99567 HLA-N-201ENST00000437516 135 ntBASIC4.85□□□□□ -1.63
NUP88Q99567 AC007003.1-202ENST00000439318 349 ntTSL 5 BASIC4.85□□□□□ -1.63
NUP88Q99567 AL592182.1-201ENST00000440897 250 ntTSL 5 BASIC4.85□□□□□ -1.63
NUP88Q99567 RPL7P36-201ENST00000444633 681 ntBASIC4.85□□□□□ -1.63
NUP88Q99567 AL359073.1-201ENST00000448036 403 ntBASIC4.85□□□□□ -1.63
NUP88Q99567 AP000542.1-201ENST00000448473 371 ntBASIC4.85□□□□□ -1.63
NUP88Q99567 ABCF2P2-201ENST00000450549 296 ntBASIC4.85□□□□□ -1.63
NUP88Q99567 RNA5SP246-201ENST00000458909 119 ntBASIC4.85□□□□□ -1.63
NUP88Q99567 AP001992.1-205ENST00000462248 379 ntBASIC4.85□□□□□ -1.63
NUP88Q99567 RN7SL604P-201ENST00000492589 296 ntBASIC4.85□□□□□ -1.63
NUP88Q99567 AC034222.1-201ENST00000494052 532 ntBASIC4.85□□□□□ -1.63
NUP88Q99567 PRELID3BP7-201ENST00000503606 469 ntBASIC4.85□□□□□ -1.63
NUP88Q99567 LINC02379-201ENST00000505741 300 ntTSL 3 BASIC4.85□□□□□ -1.63
NUP88Q99567 AC006390.1-201ENST00000508068 283 ntBASIC4.85□□□□□ -1.63
NUP88Q99567 AC093297.2-205ENST00000508123 572 ntTSL 3 BASIC4.85□□□□□ -1.63
NUP88Q99567 AC104663.1-201ENST00000508555 557 ntTSL 2 BASIC4.85□□□□□ -1.63
NUP88Q99567 LINC02272-202ENST00000511399 607 ntTSL 2 BASIC4.85□□□□□ -1.63
NUP88Q99567 FTH1P21-201ENST00000512179 511 ntBASIC4.85□□□□□ -1.63
NUP88Q99567 AC022447.1-201ENST00000515358 464 ntBASIC4.85□□□□□ -1.63
NUP88Q99567 RNU6-27P-201ENST00000516146 107 ntBASIC4.85□□□□□ -1.63
NUP88Q99567 RFPL1S-203ENST00000539579 330 ntBASIC4.85□□□□□ -1.63
NUP88Q99567 DYNLL1P4-201ENST00000549314 266 ntBASIC4.85□□□□□ -1.63
Retrieved 100 of 98,524 protein–RNA pairs in 139.1 ms