Protein–RNA interactions for Protein: Q86TS7

LINC00643, Putative UPF0730 protein encoded by LINC00643, humanhuman

Predictions only

Length 51 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643Q86TS7 AC084373.1-201ENST00000603311 235 ntBASIC1.46□□□□□ -2.18
LINC00643Q86TS7 AL589740.1-208ENST00000606913 812 ntTSL 5 BASIC1.46□□□□□ -2.18
LINC00643Q86TS7 AC067747.1-201ENST00000608026 250 ntBASIC1.46□□□□□ -2.18
LINC00643Q86TS7 AC133644.2-201ENST00000608142 540 ntBASIC1.46□□□□□ -2.18
LINC00643Q86TS7 AC092954.1-201ENST00000609121 445 ntBASIC1.46□□□□□ -2.18
LINC00643Q86TS7 CERS6-AS1-209ENST00000609766 642 ntTSL 5 BASIC1.46□□□□□ -2.18
LINC00643Q86TS7 AC090912.3-201ENST00000609775 533 ntBASIC1.46□□□□□ -2.18
LINC00643Q86TS7 STATH-208ENST00000615994 598 ntAPPRIS P1 TSL 1 (best) BASIC1.46□□□□□ -2.18
LINC00643Q86TS7 AC245389.2-201ENST00000616023 576 ntBASIC1.46□□□□□ -2.18
LINC00643Q86TS7 AL138880.2-201ENST00000616214 239 ntBASIC1.46□□□□□ -2.18
LINC00643Q86TS7 AC243756.2-201ENST00000618406 463 ntBASIC1.46□□□□□ -2.18
LINC00643Q86TS7 AC242843.1-201ENST00000618702 573 ntBASIC1.46□□□□□ -2.18
LINC00643Q86TS7 CCL4-203ENST00000621626 552 ntTSL 1 (best) BASIC1.46□□□□□ -2.18
LINC00643Q86TS7 RPL23AP61-201ENST00000623642 466 ntBASIC1.46□□□□□ -2.18
LINC00643Q86TS7 AL591030.1-201ENST00000626131 627 ntTSL 3 BASIC1.46□□□□□ -2.18
LINC00643Q86TS7 OR51A7-202ENST00000641490 2186 ntAPPRIS P1 BASIC1.46□□□□□ -2.18
LINC00643Q86TS7 AC004944.1-201ENST00000517807 3059 ntBASIC1.46□□□□□ -2.18
LINC00643Q86TS7 AP000526.1-201ENST00000603308 1388 ntBASIC1.46□□□□□ -2.18
LINC00643Q86TS7 LCA5L-218ENST00000485895 2551 ntTSL 1 (best) BASIC1.46□□□□□ -2.18
LINC00643Q86TS7 SAGE4P-201ENST00000442271 3381 ntBASIC1.45□□□□□ -2.18
LINC00643Q86TS7 AL645568.2-201ENST00000432815 1337 ntBASIC1.45□□□□□ -2.18
LINC00643Q86TS7 AC000403.1-201ENST00000613696 3585 ntBASIC1.45□□□□□ -2.18
LINC00643Q86TS7 IFNG-201ENST00000229135 1218 ntAPPRIS P1 TSL 1 (best) BASIC1.45□□□□□ -2.18
LINC00643Q86TS7 FAM133CP-201ENST00000332869 704 ntBASIC1.45□□□□□ -2.18
LINC00643Q86TS7 RNU4-39P-201ENST00000362455 127 ntBASIC1.45□□□□□ -2.18
LINC00643Q86TS7 RNA5SP391-201ENST00000363456 119 ntBASIC1.45□□□□□ -2.18
LINC00643Q86TS7 SNORA3A-201ENST00000364113 130 ntBASIC1.45□□□□□ -2.18
LINC00643Q86TS7 RNU6-461P-201ENST00000364195 107 ntBASIC1.45□□□□□ -2.18
LINC00643Q86TS7 SIRPD-201ENST00000381621 823 ntAPPRIS ALT2 TSL 3 BASIC1.45□□□□□ -2.18
LINC00643Q86TS7 VN1R12P-201ENST00000403778 876 ntBASIC1.45□□□□□ -2.18
LINC00643Q86TS7 HSFY4P-201ENST00000415994 1181 ntBASIC1.45□□□□□ -2.18
LINC00643Q86TS7 AL136979.1-201ENST00000421645 1120 ntTSL 3 BASIC1.45□□□□□ -2.18
LINC00643Q86TS7 AP000936.1-201ENST00000442124 483 ntTSL 5 BASIC1.45□□□□□ -2.18
LINC00643Q86TS7 RPL26P28-201ENST00000451325 435 ntBASIC1.45□□□□□ -2.18
LINC00643Q86TS7 AL021397.1-201ENST00000451806 248 ntBASIC1.45□□□□□ -2.18
LINC00643Q86TS7 snoU13.22-201ENST00000459428 104 ntBASIC1.45□□□□□ -2.18
LINC00643Q86TS7 LARP7P4-201ENST00000481075 878 ntBASIC1.45□□□□□ -2.18
LINC00643Q86TS7 GYPB-202ENST00000502664 521 ntTSL 1 (best) BASIC1.45□□□□□ -2.18
LINC00643Q86TS7 OR5BM1P-201ENST00000512021 366 ntBASIC1.45□□□□□ -2.18
LINC00643Q86TS7 HIGD1AP3-201ENST00000515857 278 ntBASIC1.45□□□□□ -2.18
LINC00643Q86TS7 AB015752.1-201ENST00000521975 578 ntTSL 5 BASIC1.45□□□□□ -2.18
LINC00643Q86TS7 LECT2-205ENST00000522943 574 ntTSL 3 BASIC1.45□□□□□ -2.18
LINC00643Q86TS7 AP003717.3-201ENST00000544832 1180 ntBASIC1.45□□□□□ -2.18
LINC00643Q86TS7 MIR3122-201ENST00000577243 73 ntBASIC1.45□□□□□ -2.18
LINC00643Q86TS7 PPP3CB-AS1-206ENST00000595935 675 ntTSL 5 BASIC1.45□□□□□ -2.18
LINC00643Q86TS7 AL589935.1-201ENST00000602418 488 ntTSL 4 BASIC1.45□□□□□ -2.18
LINC00643Q86TS7 AC135178.6-201ENST00000605314 398 ntBASIC1.45□□□□□ -2.18
LINC00643Q86TS7 SNORD14A-201ENST00000606526 91 ntBASIC1.45□□□□□ -2.18
LINC00643Q86TS7 AC009570.1-201ENST00000609599 745 ntBASIC1.45□□□□□ -2.18
LINC00643Q86TS7 CC2D2B-209ENST00000618242 980 ntTSL 5 BASIC1.45□□□□□ -2.18
LINC00643Q86TS7 AC012409.2-201ENST00000619812 751 ntTSL 5 BASIC1.45□□□□□ -2.18
LINC00643Q86TS7 OR5R1-201ENST00000623286 975 ntAPPRIS P1 BASIC1.45□□□□□ -2.18
LINC00643Q86TS7 MFSD8-245ENST00000641743 948 ntBASIC1.45□□□□□ -2.18
LINC00643Q86TS7 ZCWPW2-201ENST00000383768 1716 ntAPPRIS P2 TSL 1 (best) BASIC1.45□□□□□ -2.18
LINC00643Q86TS7 MT-ND5-201ENST00000361567 1812 ntAPPRIS P1 BASIC1.45□□□□□ -2.18
LINC00643Q86TS7 PCDH11Y-203ENST00000362095 4220 ntAPPRIS ALT2 TSL 1 (best) BASIC1.44□□□□□ -2.18
LINC00643Q86TS7 FGF7-206ENST00000614567 3936 ntAPPRIS P1 TSL 1 (best) BASIC1.44□□□□□ -2.18
LINC00643Q86TS7 EAF2-201ENST00000273668 992 ntAPPRIS P1 TSL 1 (best) BASIC1.44□□□□□ -2.18
LINC00643Q86TS7 KCNE2-201ENST00000290310 1051 ntAPPRIS P1 TSL 1 (best) BASIC1.44□□□□□ -2.18
LINC00643Q86TS7 DEFB108B-201ENST00000328698 222 ntAPPRIS P1 TSL 1 (best) BASIC1.44□□□□□ -2.18
LINC00643Q86TS7 SNORA71.1-201ENST00000364523 117 ntBASIC1.44□□□□□ -2.18
LINC00643Q86TS7 SNORA48.5-201ENST00000391143 135 ntBASIC1.44□□□□□ -2.18
LINC00643Q86TS7 RNU4-47P-201ENST00000410876 114 ntBASIC1.44□□□□□ -2.18
LINC00643Q86TS7 AC099566.1-204ENST00000413825 943 ntTSL 3 BASIC1.44□□□□□ -2.18
LINC00643Q86TS7 RPS15AP40-201ENST00000419621 391 ntBASIC1.44□□□□□ -2.18
LINC00643Q86TS7 MTCO3P30-201ENST00000426425 670 ntBASIC1.44□□□□□ -2.18
LINC00643Q86TS7 AC007403.1-201ENST00000427579 567 ntTSL 4 BASIC1.44□□□□□ -2.18
LINC00643Q86TS7 AC092598.1-201ENST00000431708 797 ntTSL 3 BASIC1.44□□□□□ -2.18
LINC00643Q86TS7 RPL23AP83-201ENST00000434984 473 ntBASIC1.44□□□□□ -2.18
LINC00643Q86TS7 LINC01867-201ENST00000435357 604 ntTSL 2 BASIC1.44□□□□□ -2.18
LINC00643Q86TS7 AC015923.1-201ENST00000435892 305 ntTSL 2 BASIC1.44□□□□□ -2.18
LINC00643Q86TS7 AL354977.1-201ENST00000438147 679 ntTSL 5 BASIC1.44□□□□□ -2.18
LINC00643Q86TS7 SDCBPP1-201ENST00000440192 890 ntBASIC1.44□□□□□ -2.18
LINC00643Q86TS7 KRTAP8-2P-201ENST00000440620 186 ntBASIC1.44□□□□□ -2.18
LINC00643Q86TS7 AC105271.1-201ENST00000442876 497 ntTSL 3 BASIC1.44□□□□□ -2.18
LINC00643Q86TS7 AC009296.1-201ENST00000443146 155 ntBASIC1.44□□□□□ -2.18
LINC00643Q86TS7 AL360091.1-201ENST00000447949 496 ntTSL 5 BASIC1.44□□□□□ -2.18
LINC00643Q86TS7 RPL23AP7-203ENST00000449021 469 ntBASIC1.44□□□□□ -2.18
LINC00643Q86TS7 TPMTP4-201ENST00000450749 678 ntBASIC1.44□□□□□ -2.18
LINC00643Q86TS7 CAMTA1-205ENST00000467404 546 ntTSL 3 BASIC1.44□□□□□ -2.18
LINC00643Q86TS7 SETP11-201ENST00000473027 690 ntBASIC1.44□□□□□ -2.18
LINC00643Q86TS7 LINC00535-202ENST00000517785 264 ntTSL 3 BASIC1.44□□□□□ -2.18
LINC00643Q86TS7 CYCSP26-201ENST00000534107 320 ntBASIC1.44□□□□□ -2.18
LINC00643Q86TS7 AC120045.1-201ENST00000563502 251 ntTSL 3 BASIC1.44□□□□□ -2.18
LINC00643Q86TS7 AC139426.2-201ENST00000568289 251 ntTSL 3 BASIC1.44□□□□□ -2.18
LINC00643Q86TS7 AC105137.2-201ENST00000569073 466 ntBASIC1.44□□□□□ -2.18
LINC00643Q86TS7 AC116003.2-201ENST00000579278 748 ntTSL 2 BASIC1.44□□□□□ -2.18
LINC00643Q86TS7 OR7E18P-201ENST00000592589 702 ntBASIC1.44□□□□□ -2.18
LINC00643Q86TS7 AL157786.1-204ENST00000594870 506 ntTSL 3 BASIC1.44□□□□□ -2.18
LINC00643Q86TS7 AL451086.1-201ENST00000605596 223 ntBASIC1.44□□□□□ -2.18
LINC00643Q86TS7 AL445222.1-201ENST00000607259 628 ntBASIC1.44□□□□□ -2.18
LINC00643Q86TS7 OR5H6-201ENST00000615035 1113 ntAPPRIS P1 BASIC1.44□□□□□ -2.18
LINC00643Q86TS7 LINC02335-201ENST00000616578 659 ntTSL 3 BASIC1.44□□□□□ -2.18
LINC00643Q86TS7 MIR6829-201ENST00000620375 67 ntBASIC1.44□□□□□ -2.18
LINC00643Q86TS7 LINC01002-215ENST00000632203 314 ntTSL 5 BASIC1.44□□□□□ -2.18
LINC00643Q86TS7 AC009812.4-201ENST00000569134 1805 ntBASIC1.44□□□□□ -2.18
LINC00643Q86TS7 AC110760.2-201ENST00000508031 2546 ntTSL 2 BASIC1.44□□□□□ -2.18
LINC00643Q86TS7 LINC02516-201ENST00000563724 1771 ntTSL 2 BASIC1.44□□□□□ -2.18
LINC00643Q86TS7 CCDC178-202ENST00000383096 3391 ntAPPRIS ALT2 TSL 5 BASIC1.43□□□□□ -2.18
LINC00643Q86TS7 AC123767.1-201ENST00000519537 1439 ntTSL 5 BASIC1.43□□□□□ -2.18
Retrieved 100 of 98,524 protein–RNA pairs in 99.4 ms