Protein–RNA interactions for Protein: Q15459

SF3A1, Splicing factor 3A subunit 1, humanhuman

Known RBP Predictions only

Length 793 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1Q15459 RNU5E-1-201ENST00000362477 120 ntBASIC5.43□□□□□ -1.54
SF3A1Q15459 RNU6-278P-201ENST00000390945 109 ntBASIC5.43□□□□□ -1.54
SF3A1Q15459 RNU2-43P-201ENST00000410306 190 ntBASIC5.43□□□□□ -1.54
SF3A1Q15459 AC114755.2-201ENST00000413520 361 ntBASIC5.43□□□□□ -1.54
SF3A1Q15459 ELOCP17-201ENST00000414751 326 ntBASIC5.43□□□□□ -1.54
SF3A1Q15459 LINC00276-201ENST00000417751 596 ntTSL 2 BASIC5.43□□□□□ -1.54
SF3A1Q15459 AC104850.1-201ENST00000435940 476 ntBASIC5.43□□□□□ -1.54
SF3A1Q15459 AC062032.1-201ENST00000436245 355 ntTSL 5 BASIC5.43□□□□□ -1.54
SF3A1Q15459 RPL35AP22-201ENST00000436855 335 ntBASIC5.43□□□□□ -1.54
SF3A1Q15459 TRIM60P9Y-201ENST00000438459 816 ntBASIC5.43□□□□□ -1.54
SF3A1Q15459 AL137076.1-201ENST00000441046 551 ntTSL 2 BASIC5.43□□□□□ -1.54
SF3A1Q15459 Z80107.2-201ENST00000445127 392 ntBASIC5.43□□□□□ -1.54
SF3A1Q15459 TRIM60P11Y-201ENST00000445313 801 ntBASIC5.43□□□□□ -1.54
SF3A1Q15459 NPM1P49-201ENST00000448027 714 ntBASIC5.43□□□□□ -1.54
SF3A1Q15459 AURKAPS2-201ENST00000454983 333 ntBASIC5.43□□□□□ -1.54
SF3A1Q15459 OFD1P4Y-201ENST00000455273 1179 ntBASIC5.43□□□□□ -1.54
SF3A1Q15459 RNU7-59P-201ENST00000459101 61 ntBASIC5.43□□□□□ -1.54
SF3A1Q15459 AC010285.1-201ENST00000470580 392 ntBASIC5.43□□□□□ -1.54
SF3A1Q15459 Z84488.1-201ENST00000476099 530 ntTSL 2 BASIC5.43□□□□□ -1.54
SF3A1Q15459 RBM43P1-201ENST00000476891 1081 ntBASIC5.43□□□□□ -1.54
SF3A1Q15459 AC107401.1-201ENST00000503426 685 ntBASIC5.43□□□□□ -1.54
SF3A1Q15459 ADGRL3-AS1-202ENST00000504135 542 ntTSL 5 BASIC5.43□□□□□ -1.54
SF3A1Q15459 FTH1P21-201ENST00000512179 511 ntBASIC5.43□□□□□ -1.54
SF3A1Q15459 Vault.3-201ENST00000516676 95 ntBASIC5.43□□□□□ -1.54
SF3A1Q15459 AP000676.2-201ENST00000529711 301 ntBASIC5.43□□□□□ -1.54
SF3A1Q15459 HIGD1AP5-201ENST00000529959 259 ntBASIC5.43□□□□□ -1.54
SF3A1Q15459 OR5D15P-201ENST00000531671 942 ntBASIC5.43□□□□□ -1.54
SF3A1Q15459 AC016957.1-201ENST00000534895 309 ntBASIC5.43□□□□□ -1.54
SF3A1Q15459 FAM222A-AS1-202ENST00000541460 751 ntTSL 4 BASIC5.43□□□□□ -1.54
SF3A1Q15459 AC008033.2-201ENST00000542626 177 ntBASIC5.43□□□□□ -1.54
SF3A1Q15459 AC011773.2-201ENST00000551479 285 ntTSL 5 BASIC5.43□□□□□ -1.54
SF3A1Q15459 AC087481.2-201ENST00000565492 330 ntBASIC5.43□□□□□ -1.54
SF3A1Q15459 LINC01899-202ENST00000583756 575 ntTSL 3 BASIC5.43□□□□□ -1.54
SF3A1Q15459 MIR98-201ENST00000606724 119 ntBASIC5.43□□□□□ -1.54
SF3A1Q15459 AC133644.2-201ENST00000608142 540 ntBASIC5.43□□□□□ -1.54
SF3A1Q15459 SNORD91B-202ENST00000608459 222 ntBASIC5.43□□□□□ -1.54
SF3A1Q15459 AC006338.2-201ENST00000616864 791 ntBASIC5.43□□□□□ -1.54
SF3A1Q15459 Hammerhead_HH10.1-201ENST00000620658 125 ntBASIC5.43□□□□□ -1.54
SF3A1Q15459 AL138713.1-201ENST00000624026 2130 ntBASIC5.43□□□□□ -1.54
SF3A1Q15459 AC087632.1-216ENST00000625619 487 ntAPPRIS P1 TSL 3 BASIC5.43□□□□□ -1.54
SF3A1Q15459 PIGX-211ENST00000639474 777 ntAPPRIS P3 TSL 1 (best) BASIC5.43□□□□□ -1.54
SF3A1Q15459 SMAD5-212ENST00000545620 6937 ntAPPRIS P1 TSL 5 BASIC5.42□□□□□ -1.54
SF3A1Q15459 APAF1-208ENST00000549007 3492 ntTSL 1 (best) BASIC5.42□□□□□ -1.54
SF3A1Q15459 RAD17-203ENST00000345306 2789 ntTSL 1 (best) BASIC5.42□□□□□ -1.54
SF3A1Q15459 SOS1-203ENST00000426016 8517 ntAPPRIS P2 TSL 2 BASIC5.42□□□□□ -1.54
SF3A1Q15459 STAG2-203ENST00000371145 4393 ntAPPRIS ALT1 TSL 1 (best) BASIC5.42□□□□□ -1.54
SF3A1Q15459 MDM2-207ENST00000360430 891 ntTSL 1 (best) BASIC5.42□□□□□ -1.54
SF3A1Q15459 RN7SKP226-201ENST00000364912 300 ntBASIC5.42□□□□□ -1.54
SF3A1Q15459 BANF2-202ENST00000377805 444 ntAPPRIS P1 TSL 1 (best) BASIC5.42□□□□□ -1.54
SF3A1Q15459 Y_RNA.516-201ENST00000384541 124 ntBASIC5.42□□□□□ -1.54
SF3A1Q15459 AL590762.2-201ENST00000395798 571 ntBASIC5.42□□□□□ -1.54
SF3A1Q15459 SLC8A1-AS1-201ENST00000413479 800 ntTSL 5 BASIC5.42□□□□□ -1.54
SF3A1Q15459 AC009158.1-206ENST00000417476 454 ntTSL 3 BASIC5.42□□□□□ -1.54
SF3A1Q15459 TOMM22P1-201ENST00000418578 312 ntBASIC5.42□□□□□ -1.54
SF3A1Q15459 OR2AM1P-201ENST00000422137 422 ntBASIC5.42□□□□□ -1.54
SF3A1Q15459 AL357375.1-201ENST00000424274 525 ntTSL 3 BASIC5.42□□□□□ -1.54
SF3A1Q15459 TRIM60P10Y-201ENST00000425589 751 ntBASIC5.42□□□□□ -1.54
SF3A1Q15459 TRIM60P8Y-201ENST00000436338 762 ntBASIC5.42□□□□□ -1.54
SF3A1Q15459 AC068491.2-201ENST00000438897 617 ntTSL 2 BASIC5.42□□□□□ -1.54
SF3A1Q15459 AL035258.1-201ENST00000439450 439 ntTSL 3 BASIC5.42□□□□□ -1.54
SF3A1Q15459 H2AFZP6-201ENST00000444403 394 ntBASIC5.42□□□□□ -1.54
SF3A1Q15459 AC114814.3-201ENST00000449362 663 ntTSL 2 BASIC5.42□□□□□ -1.54
SF3A1Q15459 EIF4EBP2P1-201ENST00000450009 343 ntBASIC5.42□□□□□ -1.54
SF3A1Q15459 AL645939.1-201ENST00000453429 797 ntBASIC5.42□□□□□ -1.54
SF3A1Q15459 NDUFAF4P4-201ENST00000454883 502 ntBASIC5.42□□□□□ -1.54
SF3A1Q15459 AC096666.1-201ENST00000454965 348 ntTSL 3 BASIC5.42□□□□□ -1.54
SF3A1Q15459 ARHGEF3-AS1-201ENST00000477246 489 ntTSL 2 BASIC5.42□□□□□ -1.54
SF3A1Q15459 RPL9P33-201ENST00000484311 566 ntBASIC5.42□□□□□ -1.54
SF3A1Q15459 ATP6V1G1P6-201ENST00000504007 334 ntBASIC5.42□□□□□ -1.54
SF3A1Q15459 AC091868.1-201ENST00000508746 304 ntBASIC5.42□□□□□ -1.54
SF3A1Q15459 NDST1-AS1-201ENST00000519040 368 ntTSL 2 BASIC5.42□□□□□ -1.54
SF3A1Q15459 MED28P5-201ENST00000528254 438 ntBASIC5.42□□□□□ -1.54
SF3A1Q15459 AC095350.2-201ENST00000544034 201 ntTSL 5 BASIC5.42□□□□□ -1.54
SF3A1Q15459 AC009803.3-201ENST00000548457 540 ntTSL 3 BASIC5.42□□□□□ -1.54
SF3A1Q15459 MIR4436B2-201ENST00000581415 91 ntBASIC5.42□□□□□ -1.54
SF3A1Q15459 MIR4436B1-201ENST00000583272 91 ntBASIC5.42□□□□□ -1.54
SF3A1Q15459 DAB1-AS1-208ENST00000586465 748 ntTSL 5 BASIC5.42□□□□□ -1.54
SF3A1Q15459 AC092364.1-202ENST00000593824 565 ntTSL 4 BASIC5.42□□□□□ -1.54
SF3A1Q15459 AC087283.1-201ENST00000604029 1074 ntBASIC5.42□□□□□ -1.54
SF3A1Q15459 ACYP2-208ENST00000606865 674 ntTSL 5 BASIC5.42□□□□□ -1.54
SF3A1Q15459 FAM27B-201ENST00000610601 213 ntBASIC5.42□□□□□ -1.54
SF3A1Q15459 AC006338.1-201ENST00000618453 749 ntBASIC5.42□□□□□ -1.54
SF3A1Q15459 LRRC77P-213ENST00000637727 880 ntBASIC5.42□□□□□ -1.54
SF3A1Q15459 OR2M2-203ENST00000641836 1151 ntAPPRIS P1 BASIC5.42□□□□□ -1.54
SF3A1Q15459 AL645937.1-201ENST00000641739 1652 ntBASIC5.42□□□□□ -1.54
SF3A1Q15459 UNC13C-201ENST00000260323 12946 ntAPPRIS P1 TSL 5 BASIC5.42□□□□□ -1.54
SF3A1Q15459 ARHGAP42P3-201ENST00000443989 2508 ntBASIC5.42□□□□□ -1.54
SF3A1Q15459 INTS6P1-201ENST00000504674 2530 ntBASIC5.42□□□□□ -1.54
SF3A1Q15459 ARHGEF38-202ENST00000420470 5454 ntAPPRIS P1 TSL 5 BASIC5.42□□□□□ -1.54
SF3A1Q15459 API5-210ENST00000534600 1760 ntTSL 5 BASIC5.42□□□□□ -1.54
SF3A1Q15459 ZFHX4-207ENST00000521891 14019 ntAPPRIS P2 TSL 5 BASIC5.41□□□□□ -1.54
SF3A1Q15459 XPO4-201ENST00000255305 9921 ntAPPRIS P2 TSL 1 (best) BASIC5.41□□□□□ -1.54
SF3A1Q15459 CNTN1-201ENST00000347616 5507 ntAPPRIS P1 TSL 1 (best) BASIC5.41□□□□□ -1.54
SF3A1Q15459 TMEM106B-201ENST00000396667 12539 ntAPPRIS P1 TSL 1 (best) BASIC5.41□□□□□ -1.54
SF3A1Q15459 DAZ1-205ENST00000540248 3268 ntTSL 5 BASIC5.41□□□□□ -1.54
SF3A1Q15459 TLK1-212ENST00000521943 2605 ntTSL 2 BASIC5.41□□□□□ -1.54
SF3A1Q15459 OR5K1-201ENST00000332650 1097 ntAPPRIS P1 BASIC5.41□□□□□ -1.54
SF3A1Q15459 RNY3P13-201ENST00000365542 102 ntBASIC5.41□□□□□ -1.54
SF3A1Q15459 RNU6-1181P-201ENST00000384191 106 ntBASIC5.41□□□□□ -1.54
SF3A1Q15459 RNU1-82P-201ENST00000390851 165 ntBASIC5.41□□□□□ -1.54
Retrieved 100 of 98,524 protein–RNA pairs in 97.1 ms