Protein–RNA interactions for Protein: P78317

RNF4, E3 ubiquitin-protein ligase RNF4, humanhuman

Predictions only

Length 190 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4P78317 RNU6-1088P-201ENST00000516850 104 ntBASIC5.04□□□□□ -1.6
RNF4P78317 AC021698.1-201ENST00000524858 716 ntTSL 3 BASIC5.04□□□□□ -1.6
RNF4P78317 AL035078.3-201ENST00000525382 241 ntTSL 3 BASIC5.04□□□□□ -1.6
RNF4P78317 ST3GAL3-233ENST00000531816 344 ntTSL 1 (best) BASIC5.04□□□□□ -1.6
RNF4P78317 AC027018.1-202ENST00000534723 383 ntTSL 3 BASIC5.04□□□□□ -1.6
RNF4P78317 GSTP1P1-201ENST00000548078 319 ntBASIC5.04□□□□□ -1.6
RNF4P78317 LINC02286-201ENST00000552425 285 ntTSL 2 BASIC5.04□□□□□ -1.6
RNF4P78317 AL160237.1-201ENST00000554526 572 ntTSL 4 BASIC5.04□□□□□ -1.6
RNF4P78317 AC126323.3-201ENST00000565136 564 ntTSL 4 BASIC5.04□□□□□ -1.6
RNF4P78317 MAPKAPK5-AS1-205ENST00000590479 543 ntTSL 2 BASIC5.04□□□□□ -1.6
RNF4P78317 AC022098.3-201ENST00000590715 315 ntTSL 3 BASIC5.04□□□□□ -1.6
RNF4P78317 IMMP1LP3-201ENST00000604197 224 ntBASIC5.04□□□□□ -1.6
RNF4P78317 AL080274.1-201ENST00000605565 220 ntBASIC5.04□□□□□ -1.6
RNF4P78317 AC124303.1-201ENST00000605703 360 ntBASIC5.04□□□□□ -1.6
RNF4P78317 NAA60-237ENST00000615865 326 ntTSL 5 BASIC5.04□□□□□ -1.6
RNF4P78317 AC008121.3-201ENST00000618726 433 ntBASIC5.04□□□□□ -1.6
RNF4P78317 AC009093.5-201ENST00000620963 359 ntTSL 2 BASIC5.04□□□□□ -1.6
RNF4P78317 CNOT1-223ENST00000628857 291 ntTSL 5 BASIC5.04□□□□□ -1.6
RNF4P78317 AC073869.8-201ENST00000641806 335 ntBASIC5.04□□□□□ -1.6
RNF4P78317 DPP8-203ENST00000341861 8699 ntAPPRIS P4 TSL 2 BASIC5.04□□□□□ -1.6
RNF4P78317 EPB41L2-226ENST00000530757 4360 ntTSL 2 BASIC5.04□□□□□ -1.6
RNF4P78317 DSPP-202ENST00000399271 4331 ntAPPRIS P1 TSL 5 BASIC5.04□□□□□ -1.6
RNF4P78317 ST8SIA4-201ENST00000231461 6303 ntAPPRIS P1 TSL 1 (best) BASIC5.04□□□□□ -1.6
RNF4P78317 PLD1-203ENST00000356327 5855 ntAPPRIS P1 TSL 1 (best) BASIC5.04□□□□□ -1.6
RNF4P78317 GABRG1-201ENST00000295452 6785 ntAPPRIS P1 TSL 1 (best) BASIC5.04□□□□□ -1.6
RNF4P78317 TXNDC8-201ENST00000374507 1787 ntTSL 1 (best) BASIC5.04□□□□□ -1.6
RNF4P78317 RRP15-201ENST00000366932 7771 ntAPPRIS P1 TSL 1 (best) BASIC5.03□□□□□ -1.6
RNF4P78317 ANAPC1P1-201ENST00000426186 2145 ntBASIC5.03□□□□□ -1.6
RNF4P78317 AASDH-210ENST00000602986 3480 ntTSL 5 BASIC5.03□□□□□ -1.6
RNF4P78317 ANO3-202ENST00000525139 3257 ntAPPRIS ALT1 TSL 5 BASIC5.03□□□□□ -1.6
RNF4P78317 RIMS1-212ENST00000517827 3065 ntTSL 2 BASIC5.03□□□□□ -1.6
RNF4P78317 MTCO1P12-201ENST00000414273 1543 ntBASIC5.03□□□□□ -1.6
RNF4P78317 ZNF734P-201ENST00000419494 1534 ntBASIC5.03□□□□□ -1.6
RNF4P78317 NLRC4-203ENST00000402280 3355 ntAPPRIS P1 TSL 1 (best) BASIC5.03□□□□□ -1.6
RNF4P78317 DLD-204ENST00000437604 1859 ntTSL 2 BASIC5.03□□□□□ -1.6
RNF4P78317 ZNF442-205ENST00000545749 1884 ntAPPRIS P1 TSL 5 BASIC5.03□□□□□ -1.6
RNF4P78317 PCDH15-215ENST00000409834 5401 ntTSL 5 BASIC5.03□□□□□ -1.6
RNF4P78317 CFL2-201ENST00000298159 6747 ntAPPRIS P1 TSL 1 (best) BASIC5.03□□□□□ -1.6
RNF4P78317 LINC00919-201ENST00000561513 1658 ntTSL 2 BASIC5.03□□□□□ -1.6
RNF4P78317 IKZF2-207ENST00000434687 3888 ntAPPRIS P2 TSL 5 BASIC5.03□□□□□ -1.6
RNF4P78317 MIR133B-201ENST00000362210 119 ntBASIC5.03□□□□□ -1.6
RNF4P78317 RNU6-254P-201ENST00000363377 107 ntBASIC5.03□□□□□ -1.6
RNF4P78317 Y_RNA.167-201ENST00000363735 109 ntBASIC5.03□□□□□ -1.6
RNF4P78317 Y_RNA.202-201ENST00000364083 110 ntBASIC5.03□□□□□ -1.6
RNF4P78317 Y_RNA.339-201ENST00000365325 102 ntBASIC5.03□□□□□ -1.6
RNF4P78317 SNORA24.1-201ENST00000384401 135 ntBASIC5.03□□□□□ -1.6
RNF4P78317 RNU6-516P-201ENST00000411381 104 ntBASIC5.03□□□□□ -1.6
RNF4P78317 AC009302.1-201ENST00000417147 390 ntBASIC5.03□□□□□ -1.6
RNF4P78317 ZFY-AS1-202ENST00000431145 419 ntTSL 3 BASIC5.03□□□□□ -1.6
RNF4P78317 RPL7L1P9-201ENST00000431298 745 ntBASIC5.03□□□□□ -1.6
RNF4P78317 AL138759.1-201ENST00000432120 645 ntTSL 2 BASIC5.03□□□□□ -1.6
RNF4P78317 AL080284.1-201ENST00000434493 442 ntTSL 2 BASIC5.03□□□□□ -1.6
RNF4P78317 ZDHHC20P1-204ENST00000435787 423 ntBASIC5.03□□□□□ -1.6
RNF4P78317 AC005019.1-201ENST00000436455 431 ntBASIC5.03□□□□□ -1.6
RNF4P78317 AC073465.2-201ENST00000440938 498 ntBASIC5.03□□□□□ -1.6
RNF4P78317 SFTA1P-203ENST00000446372 693 ntTSL 1 (best) BASIC5.03□□□□□ -1.6
RNF4P78317 IGKV1OR-3-201ENST00000446944 348 ntBASIC5.03□□□□□ -1.6
RNF4P78317 AC025918.1-201ENST00000452467 383 ntTSL 3 BASIC5.03□□□□□ -1.6
RNF4P78317 AC019155.3-201ENST00000454957 600 ntTSL 2 BASIC5.03□□□□□ -1.6
RNF4P78317 AC004801.2-202ENST00000463559 283 ntBASIC5.03□□□□□ -1.6
RNF4P78317 AC068633.1-201ENST00000482142 787 ntTSL 5 BASIC5.03□□□□□ -1.6
RNF4P78317 SRP72-202ENST00000504757 745 ntTSL 2 BASIC5.03□□□□□ -1.6
RNF4P78317 MRPL36-203ENST00000505818 595 ntAPPRIS P1 TSL 3 BASIC5.03□□□□□ -1.6
RNF4P78317 LINC00992-202ENST00000514186 564 ntTSL 5 BASIC5.03□□□□□ -1.6
RNF4P78317 HMGN1P9-201ENST00000515212 298 ntBASIC5.03□□□□□ -1.6
RNF4P78317 RN7SKP277-201ENST00000516895 283 ntBASIC5.03□□□□□ -1.6
RNF4P78317 AC024958.1-203ENST00000520256 577 ntTSL 2 BASIC5.03□□□□□ -1.6
RNF4P78317 HMGB1P40-201ENST00000525121 540 ntBASIC5.03□□□□□ -1.6
RNF4P78317 ASB8-202ENST00000535055 657 ntTSL 2 BASIC5.03□□□□□ -1.6
RNF4P78317 AC126177.5-201ENST00000549599 178 ntBASIC5.03□□□□□ -1.6
RNF4P78317 AL445074.1-201ENST00000555362 318 ntTSL 2 BASIC5.03□□□□□ -1.6
RNF4P78317 CERS3-AS1-202ENST00000560718 432 ntTSL 3 BASIC5.03□□□□□ -1.6
RNF4P78317 AC007599.2-201ENST00000573040 493 ntTSL 5 BASIC5.03□□□□□ -1.6
RNF4P78317 AC090457.1-201ENST00000579775 211 ntTSL 3 BASIC5.03□□□□□ -1.6
RNF4P78317 AC024619.4-201ENST00000580924 316 ntBASIC5.03□□□□□ -1.6
RNF4P78317 AC022916.4-201ENST00000585646 475 ntTSL 3 BASIC5.03□□□□□ -1.6
RNF4P78317 AC073254.1-207ENST00000600482 714 ntTSL 5 BASIC5.03□□□□□ -1.6
RNF4P78317 LINC00907-211ENST00000601948 795 ntTSL 5 BASIC5.03□□□□□ -1.6
RNF4P78317 AC016925.2-201ENST00000605108 242 ntBASIC5.03□□□□□ -1.6
RNF4P78317 AL592436.1-201ENST00000605135 558 ntBASIC5.03□□□□□ -1.6
RNF4P78317 LINC02112-204ENST00000606222 429 ntTSL 5 BASIC5.03□□□□□ -1.6
RNF4P78317 AP001521.2-201ENST00000608772 546 ntBASIC5.03□□□□□ -1.6
RNF4P78317 AL139124.1-201ENST00000609123 421 ntBASIC5.03□□□□□ -1.6
RNF4P78317 AC006329.2-201ENST00000611491 394 ntBASIC5.03□□□□□ -1.6
RNF4P78317 AC073172.1-201ENST00000636967 851 ntTSL 5 BASIC5.03□□□□□ -1.6
RNF4P78317 NCOA1-206ENST00000407230 4745 ntTSL 1 (best) BASIC5.03□□□□□ -1.6
RNF4P78317 PCDH15-201ENST00000320301 6845 ntTSL 1 (best) BASIC5.03□□□□□ -1.6
RNF4P78317 PLCZ1-209ENST00000539875 1398 ntTSL 1 (best) BASIC5.03□□□□□ -1.6
RNF4P78317 GHR-207ENST00000537449 4419 ntAPPRIS P1 TSL 5 BASIC5.03□□□□□ -1.61
RNF4P78317 ATP1B4-202ENST00000361319 3856 ntAPPRIS P3 TSL 1 (best) BASIC5.02□□□□□ -1.61
RNF4P78317 AMY2B-201ENST00000361355 2181 ntAPPRIS P1 TSL 1 (best) BASIC5.02□□□□□ -1.61
RNF4P78317 LINC00504-201ENST00000505089 4672 ntTSL 2 BASIC5.02□□□□□ -1.61
RNF4P78317 EOGT-209ENST00000540955 1332 ntTSL 2 BASIC5.02□□□□□ -1.61
RNF4P78317 RANBP3L-201ENST00000296604 3104 ntAPPRIS P3 TSL 1 (best) BASIC5.02□□□□□ -1.61
RNF4P78317 PWRN2-202ENST00000567246 4295 ntTSL 1 (best) BASIC5.02□□□□□ -1.61
RNF4P78317 ATP1B4-201ENST00000218008 3868 ntAPPRIS ALT1 TSL 1 (best) BASIC5.02□□□□□ -1.61
RNF4P78317 LIX1-AS1-201ENST00000504578 1793 ntTSL 5 BASIC5.02□□□□□ -1.61
RNF4P78317 AC006206.1-201ENST00000544842 3387 ntBASIC5.02□□□□□ -1.61
RNF4P78317 RN7SKP185-201ENST00000362813 326 ntBASIC5.02□□□□□ -1.61
RNF4P78317 RN7SKP44-201ENST00000363602 316 ntBASIC5.02□□□□□ -1.61
Retrieved 100 of 98,524 protein–RNA pairs in 96.4 ms