Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 ZNF334-205ENST00000615481 3706 ntAPPRIS ALT2 TSL 5 BASIC2.61□□□□□ -1.99
FOXA1P55317 DDX6-206ENST00000534980 4538 ntAPPRIS P1 TSL 1 (best) BASIC2.61□□□□□ -1.99
FOXA1P55317 MGAT4C-210ENST00000620241 3194 ntAPPRIS P1 TSL 2 BASIC2.61□□□□□ -1.99
FOXA1P55317 AC007256.1-201ENST00000392253 2765 ntBASIC2.61□□□□□ -1.99
FOXA1P55317 CPXCR1-201ENST00000276127 1630 ntAPPRIS P1 TSL 1 (best) BASIC2.6□□□□□ -1.99
FOXA1P55317 OR9G4-203ENST00000641581 2603 ntAPPRIS P1 BASIC2.6□□□□□ -1.99
FOXA1P55317 CHD9-203ENST00000447540 11509 ntTSL 5 BASIC2.6□□□□□ -1.99
FOXA1P55317 FNBP1L-203ENST00000370253 3889 ntAPPRIS ALT1 TSL 5 BASIC2.6□□□□□ -1.99
FOXA1P55317 USP45-208ENST00000500704 5826 ntAPPRIS P1 TSL 5 BASIC2.6□□□□□ -1.99
FOXA1P55317 RNU6-356P-201ENST00000384140 107 ntBASIC2.6□□□□□ -1.99
FOXA1P55317 AL024507.1-201ENST00000412741 274 ntBASIC2.6□□□□□ -1.99
FOXA1P55317 OR4K6P-201ENST00000416478 897 ntBASIC2.6□□□□□ -1.99
FOXA1P55317 YPEL5P1-201ENST00000419731 367 ntBASIC2.6□□□□□ -1.99
FOXA1P55317 AL603910.1-201ENST00000423099 370 ntTSL 3 BASIC2.6□□□□□ -1.99
FOXA1P55317 AL590783.1-201ENST00000424138 456 ntTSL 2 BASIC2.6□□□□□ -1.99
FOXA1P55317 YWHAZP7-201ENST00000436906 631 ntBASIC2.6□□□□□ -1.99
FOXA1P55317 DIAPH2-AS1-201ENST00000439759 971 ntTSL 3 BASIC2.6□□□□□ -1.99
FOXA1P55317 AL929236.1-201ENST00000443622 518 ntTSL 3 BASIC2.6□□□□□ -1.99
FOXA1P55317 RPL39P40-201ENST00000445481 146 ntBASIC2.6□□□□□ -1.99
FOXA1P55317 HMGN2P21-201ENST00000447764 270 ntBASIC2.6□□□□□ -1.99
FOXA1P55317 AC092685.1-201ENST00000447960 1243 ntBASIC2.6□□□□□ -1.99
FOXA1P55317 RSL24D1P3-201ENST00000449255 495 ntBASIC2.6□□□□□ -1.99
FOXA1P55317 GRM7-AS3-208ENST00000455623 947 ntTSL 3 BASIC2.6□□□□□ -1.99
FOXA1P55317 RPL37P6-202ENST00000464216 403 ntBASIC2.6□□□□□ -1.99
FOXA1P55317 AL136126.1-201ENST00000473603 402 ntBASIC2.6□□□□□ -1.99
FOXA1P55317 AC108729.2-201ENST00000476543 840 ntBASIC2.6□□□□□ -1.99
FOXA1P55317 RAD51AP1P1-201ENST00000484195 1001 ntBASIC2.6□□□□□ -1.99
FOXA1P55317 CAPZA2-212ENST00000490693 809 ntTSL 2 BASIC2.6□□□□□ -1.99
FOXA1P55317 AC016687.2-201ENST00000504795 541 ntTSL 5 BASIC2.6□□□□□ -1.99
FOXA1P55317 MTND4LP22-201ENST00000508209 276 ntBASIC2.6□□□□□ -1.99
FOXA1P55317 AC074131.1-201ENST00000514662 253 ntTSL 2 BASIC2.6□□□□□ -1.99
FOXA1P55317 AC105999.1-201ENST00000518722 473 ntTSL 3 BASIC2.6□□□□□ -1.99
FOXA1P55317 AC009597.1-201ENST00000521215 584 ntTSL 4 BASIC2.6□□□□□ -1.99
FOXA1P55317 AC008562.1-201ENST00000521763 330 ntBASIC2.6□□□□□ -1.99
FOXA1P55317 AC100871.2-201ENST00000522005 327 ntTSL 3 BASIC2.6□□□□□ -1.99
FOXA1P55317 AC010306.1-201ENST00000523223 1117 ntBASIC2.6□□□□□ -1.99
FOXA1P55317 OR4A45P-201ENST00000529954 901 ntBASIC2.6□□□□□ -1.99
FOXA1P55317 AC008114.1-201ENST00000544122 427 ntTSL 2 BASIC2.6□□□□□ -1.99
FOXA1P55317 LINC01481-201ENST00000552998 629 ntTSL 2 BASIC2.6□□□□□ -1.99
FOXA1P55317 AC025918.2-201ENST00000558683 763 ntBASIC2.6□□□□□ -1.99
FOXA1P55317 AC106782.4-201ENST00000568264 210 ntBASIC2.6□□□□□ -1.99
FOXA1P55317 MIR4474-201ENST00000579189 78 ntBASIC2.6□□□□□ -1.99
FOXA1P55317 AC008277.2-201ENST00000605196 797 ntBASIC2.6□□□□□ -1.99
FOXA1P55317 AL450270.1-201ENST00000606160 391 ntBASIC2.6□□□□□ -1.99
FOXA1P55317 AL627309.6-201ENST00000606857 840 ntBASIC2.6□□□□□ -1.99
FOXA1P55317 MIR1264-201ENST00000616374 69 ntBASIC2.6□□□□□ -1.99
FOXA1P55317 AC121761.2-201ENST00000617300 689 ntBASIC2.6□□□□□ -1.99
FOXA1P55317 AL589740.1-205ENST00000635561 565 ntTSL 5 BASIC2.6□□□□□ -1.99
FOXA1P55317 XRN1-202ENST00000392981 5383 ntAPPRIS ALT1 TSL 1 (best) BASIC2.6□□□□□ -1.99
FOXA1P55317 FTX-214ENST00000638437 12267 ntTSL 5 BASIC2.6□□□□□ -1.99
FOXA1P55317 API5P2-201ENST00000397055 1498 ntBASIC2.59□□□□□ -1.99
FOXA1P55317 LINC02516-201ENST00000563724 1771 ntTSL 2 BASIC2.59□□□□□ -1.99
FOXA1P55317 FAM35BP-202ENST00000497389 3337 ntBASIC2.59□□□□□ -1.99
FOXA1P55317 TSHB-201ENST00000256592 537 ntAPPRIS P1 TSL 5 BASIC2.59□□□□□ -1.99
FOXA1P55317 MRRF-203ENST00000373723 1176 ntTSL 3 BASIC2.59□□□□□ -1.99
FOXA1P55317 SNORD21-201ENST00000383953 95 ntBASIC2.59□□□□□ -1.99
FOXA1P55317 SNORA44-201ENST00000384584 132 ntBASIC2.59□□□□□ -1.99
FOXA1P55317 MIR634-201ENST00000385208 97 ntBASIC2.59□□□□□ -1.99
FOXA1P55317 TRAJ26-201ENST00000390511 60 ntAPPRIS P1 BASIC2.59□□□□□ -1.99
FOXA1P55317 RNA5SP210-201ENST00000391034 120 ntBASIC2.59□□□□□ -1.99
FOXA1P55317 AL138827.1-201ENST00000402666 306 ntBASIC2.59□□□□□ -1.99
FOXA1P55317 RPS27L-202ENST00000411926 528 ntTSL 3 BASIC2.59□□□□□ -1.99
FOXA1P55317 MTCO1P43-201ENST00000431831 488 ntBASIC2.59□□□□□ -1.99
FOXA1P55317 LINC01967-202ENST00000437506 515 ntTSL 5 BASIC2.59□□□□□ -1.99
FOXA1P55317 MTCO3P43-201ENST00000440974 771 ntBASIC2.59□□□□□ -1.99
FOXA1P55317 AL135938.1-201ENST00000443141 297 ntBASIC2.59□□□□□ -1.99
FOXA1P55317 AC064871.1-201ENST00000444562 427 ntTSL 3 BASIC2.59□□□□□ -1.99
FOXA1P55317 RPS27AP9-201ENST00000477681 438 ntBASIC2.59□□□□□ -1.99
FOXA1P55317 OR52A4P-202ENST00000481634 799 ntBASIC2.59□□□□□ -1.99
FOXA1P55317 AC008494.2-201ENST00000514544 370 ntBASIC2.59□□□□□ -1.99
FOXA1P55317 RN7SKP234-201ENST00000517173 224 ntBASIC2.59□□□□□ -1.99
FOXA1P55317 RN7SKP283-201ENST00000517197 270 ntBASIC2.59□□□□□ -1.99
FOXA1P55317 AC108863.1-201ENST00000520863 650 ntTSL 3 BASIC2.59□□□□□ -1.99
FOXA1P55317 AF099810.1-201ENST00000554219 525 ntTSL 3 BASIC2.59□□□□□ -1.99
FOXA1P55317 AL731537.2-201ENST00000561565 951 ntBASIC2.59□□□□□ -1.99
FOXA1P55317 AC074052.2-201ENST00000562516 214 ntTSL 3 BASIC2.59□□□□□ -1.99
FOXA1P55317 AC016134.1-201ENST00000565259 701 ntTSL 3 BASIC2.59□□□□□ -1.99
FOXA1P55317 AC087463.1-201ENST00000568541 556 ntTSL 2 BASIC2.59□□□□□ -1.99
FOXA1P55317 MIR4635-201ENST00000583759 79 ntBASIC2.59□□□□□ -1.99
FOXA1P55317 NTAN1P1-201ENST00000603150 646 ntBASIC2.59□□□□□ -1.99
FOXA1P55317 OR4H6P-202ENST00000603819 340 ntBASIC2.59□□□□□ -1.99
FOXA1P55317 AL392112.1-201ENST00000605115 829 ntBASIC2.59□□□□□ -1.99
FOXA1P55317 AL513477.2-201ENST00000607858 568 ntBASIC2.59□□□□□ -1.99
FOXA1P55317 AC006065.5-201ENST00000623427 349 ntBASIC2.59□□□□□ -1.99
FOXA1P55317 ITGA9-AS1-218ENST00000630762 751 ntTSL 5 BASIC2.59□□□□□ -1.99
FOXA1P55317 C20orf24-208ENST00000639924 351 ntTSL 5 BASIC2.59□□□□□ -1.99
FOXA1P55317 ERBIN-204ENST00000380943 6410 ntAPPRIS P3 TSL 1 (best) BASIC2.59□□□□□ -1.99
FOXA1P55317 OXR1-205ENST00000442977 2956 ntTSL 2 BASIC2.59□□□□□ -2
FOXA1P55317 IKZF2-213ENST00000457361 9350 ntTSL 5 BASIC2.59□□□□□ -2
FOXA1P55317 NEDD4-208ENST00000508342 7235 ntTSL 1 (best) BASIC2.59□□□□□ -2
FOXA1P55317 AL136164.4-201ENST00000625013 2135 ntBASIC2.59□□□□□ -2
FOXA1P55317 AC103988.1-201ENST00000566382 2177 ntBASIC2.59□□□□□ -2
FOXA1P55317 MBNL3-205ENST00000370857 8760 ntTSL 5 BASIC2.58□□□□□ -2
FOXA1P55317 WDFY3-AS2-202ENST00000451762 5814 ntTSL 3 BASIC2.58□□□□□ -2
FOXA1P55317 MIR592-201ENST00000384959 97 ntBASIC2.58□□□□□ -2
FOXA1P55317 SAR1AP2-201ENST00000392696 594 ntBASIC2.58□□□□□ -2
FOXA1P55317 AL356057.3-201ENST00000402607 340 ntBASIC2.58□□□□□ -2
FOXA1P55317 AL031121.1-201ENST00000406553 254 ntBASIC2.58□□□□□ -2
FOXA1P55317 AC096664.2-201ENST00000411843 406 ntBASIC2.58□□□□□ -2
FOXA1P55317 AL139281.1-201ENST00000422120 335 ntBASIC2.58□□□□□ -2
Retrieved 100 of 98,524 protein–RNA pairs in 98.6 ms