Protein–RNA interactions for Protein: P49916

LIG3, DNA ligase 3, humanhuman

Predictions only

Length 1,009 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3P49916 SCARNA16.4-201ENST00000516956 187 ntBASIC5.47□□□□□ -1.53
LIG3P49916 TBCA-207ENST00000520039 157 ntTSL 3 BASIC5.47□□□□□ -1.53
LIG3P49916 AC068672.1-201ENST00000520391 328 ntTSL 3 BASIC5.47□□□□□ -1.53
LIG3P49916 AC079209.1-202ENST00000521953 522 ntTSL 3 BASIC5.47□□□□□ -1.53
LIG3P49916 AC068587.5-201ENST00000528506 175 ntBASIC5.47□□□□□ -1.53
LIG3P49916 AP000873.2-203ENST00000528524 549 ntTSL 2 BASIC5.47□□□□□ -1.53
LIG3P49916 AP003072.1-201ENST00000531740 145 ntBASIC5.47□□□□□ -1.53
LIG3P49916 NCAPGP2-201ENST00000557911 754 ntBASIC5.47□□□□□ -1.53
LIG3P49916 AC026462.3-202ENST00000564361 515 ntTSL 3 BASIC5.47□□□□□ -1.53
LIG3P49916 LINC02185-201ENST00000575424 760 ntTSL 5 BASIC5.47□□□□□ -1.53
LIG3P49916 AC073254.1-207ENST00000600482 714 ntTSL 5 BASIC5.47□□□□□ -1.53
LIG3P49916 AC020910.2-201ENST00000603635 610 ntBASIC5.47□□□□□ -1.53
LIG3P49916 SUMO2P15-201ENST00000604285 278 ntBASIC5.47□□□□□ -1.53
LIG3P49916 RNU6-89P-201ENST00000606519 100 ntBASIC5.47□□□□□ -1.53
LIG3P49916 AC104237.2-201ENST00000612456 443 ntBASIC5.47□□□□□ -1.53
LIG3P49916 AC009093.5-201ENST00000620963 359 ntTSL 2 BASIC5.47□□□□□ -1.53
LIG3P49916 AC006355.2-201ENST00000629240 317 ntTSL 3 BASIC5.47□□□□□ -1.53
LIG3P49916 DAOA-212ENST00000640578 378 ntAPPRIS ALT2 TSL 5 BASIC5.47□□□□□ -1.53
LIG3P49916 NPSR1-AS1-202ENST00000419766 4821 ntTSL 1 (best) BASIC5.47□□□□□ -1.53
LIG3P49916 IQCB2P-201ENST00000401788 1633 ntBASIC5.47□□□□□ -1.53
LIG3P49916 SDCBP-213ENST00000630925 2076 ntTSL 5 BASIC5.47□□□□□ -1.53
LIG3P49916 DTNA-229ENST00000598142 2509 ntTSL 1 (best) BASIC5.47□□□□□ -1.53
LIG3P49916 SAMSN1-203ENST00000400566 1888 ntAPPRIS P1 TSL 1 (best) BASIC5.47□□□□□ -1.53
LIG3P49916 HELLS-204ENST00000371332 2675 ntTSL 5 BASIC5.47□□□□□ -1.53
LIG3P49916 OR2L3-202ENST00000641161 2830 ntAPPRIS P1 BASIC5.47□□□□□ -1.53
LIG3P49916 OR2L3-203ENST00000641649 2846 ntAPPRIS P1 BASIC5.47□□□□□ -1.53
LIG3P49916 ARHGAP24-201ENST00000264343 4572 ntTSL 1 (best) BASIC5.47□□□□□ -1.53
LIG3P49916 CDH19-201ENST00000262150 6341 ntAPPRIS P1 TSL 1 (best) BASIC5.46□□□□□ -1.53
LIG3P49916 RC3H1-202ENST00000367694 3775 ntAPPRIS ALT1 TSL 2 BASIC5.46□□□□□ -1.53
LIG3P49916 ACKR4-201ENST00000249887 1914 ntAPPRIS P1 TSL 1 (best) BASIC5.46□□□□□ -1.53
LIG3P49916 WDR7-201ENST00000254442 14083 ntAPPRIS P1 TSL 1 (best) BASIC5.46□□□□□ -1.53
LIG3P49916 GTDC1-220ENST00000618778 2317 ntTSL 5 BASIC5.46□□□□□ -1.54
LIG3P49916 WDR17-204ENST00000507824 4119 ntTSL 5 BASIC5.46□□□□□ -1.54
LIG3P49916 INTU-201ENST00000335251 13233 ntAPPRIS P1 TSL 1 (best) BASIC5.46□□□□□ -1.54
LIG3P49916 SNORA62.1-201ENST00000364287 154 ntBASIC5.46□□□□□ -1.54
LIG3P49916 OR5L2-201ENST00000378397 936 ntAPPRIS P1 BASIC5.46□□□□□ -1.54
LIG3P49916 Y_RNA.394-201ENST00000383942 103 ntBASIC5.46□□□□□ -1.54
LIG3P49916 AC013442.1-201ENST00000397347 228 ntBASIC5.46□□□□□ -1.54
LIG3P49916 Y_RNA.615-201ENST00000410769 117 ntBASIC5.46□□□□□ -1.54
LIG3P49916 AC007314.1-201ENST00000414538 565 ntTSL 4 BASIC5.46□□□□□ -1.54
LIG3P49916 NDUFB4P5-201ENST00000415445 361 ntBASIC5.46□□□□□ -1.54
LIG3P49916 AC073323.1-201ENST00000419832 451 ntTSL 2 BASIC5.46□□□□□ -1.54
LIG3P49916 SRSF1P1-201ENST00000424058 520 ntBASIC5.46□□□□□ -1.54
LIG3P49916 RPL12P34-201ENST00000424532 479 ntBASIC5.46□□□□□ -1.54
LIG3P49916 TXNIP-201ENST00000425134 1225 ntTSL 2 BASIC5.46□□□□□ -1.54
LIG3P49916 OR2AS1P-201ENST00000427827 319 ntBASIC5.46□□□□□ -1.54
LIG3P49916 KCNIP1-205ENST00000434108 726 ntTSL 1 (best) BASIC5.46□□□□□ -1.54
LIG3P49916 AC236972.2-201ENST00000434979 310 ntBASIC5.46□□□□□ -1.54
LIG3P49916 HMGB1P18-201ENST00000438801 619 ntBASIC5.46□□□□□ -1.54
LIG3P49916 CYCSP24-201ENST00000445119 316 ntBASIC5.46□□□□□ -1.54
LIG3P49916 MTND1P18-201ENST00000448191 573 ntBASIC5.46□□□□□ -1.54
LIG3P49916 BX276092.4-201ENST00000452056 248 ntBASIC5.46□□□□□ -1.54
LIG3P49916 RNU6-329P-201ENST00000459618 107 ntBASIC5.46□□□□□ -1.54
LIG3P49916 AP000942.1-201ENST00000463969 747 ntBASIC5.46□□□□□ -1.54
LIG3P49916 AC004062.1-201ENST00000509926 645 ntBASIC5.46□□□□□ -1.54
LIG3P49916 Y_RNA.691-201ENST00000516611 103 ntBASIC5.46□□□□□ -1.54
LIG3P49916 RN7SKP82-201ENST00000516786 223 ntBASIC5.46□□□□□ -1.54
LIG3P49916 HMGB1P41-201ENST00000520234 440 ntBASIC5.46□□□□□ -1.54
LIG3P49916 DEFB130C-201ENST00000528518 237 ntTSL 1 (best) BASIC5.46□□□□□ -1.54
LIG3P49916 PYM1-205ENST00000547925 499 ntTSL 3 BASIC5.46□□□□□ -1.54
LIG3P49916 AC079584.2-201ENST00000548756 515 ntTSL 3 BASIC5.46□□□□□ -1.54
LIG3P49916 AC126177.5-201ENST00000549599 178 ntBASIC5.46□□□□□ -1.54
LIG3P49916 AC025263.2-201ENST00000550437 548 ntAPPRIS P1 TSL 5 BASIC5.46□□□□□ -1.54
LIG3P49916 NOVA1-AS1-203ENST00000552101 468 ntTSL 3 BASIC5.46□□□□□ -1.54
LIG3P49916 MIR4716-201ENST00000579628 84 ntBASIC5.46□□□□□ -1.54
LIG3P49916 MIR1269B-201ENST00000580405 75 ntBASIC5.46□□□□□ -1.54
LIG3P49916 LINC01515-204ENST00000595269 402 ntTSL 5 BASIC5.46□□□□□ -1.54
LIG3P49916 AC021646.1-201ENST00000605469 484 ntBASIC5.46□□□□□ -1.54
LIG3P49916 AC113194.1-201ENST00000606037 500 ntBASIC5.46□□□□□ -1.54
LIG3P49916 AC019278.1-201ENST00000623516 479 ntBASIC5.46□□□□□ -1.54
LIG3P49916 AC091925.2-201ENST00000625059 256 ntBASIC5.46□□□□□ -1.54
LIG3P49916 MTUS1-203ENST00000381861 3996 ntAPPRIS P4 TSL 2 BASIC5.46□□□□□ -1.54
LIG3P49916 ACSL5-204ENST00000393081 3380 ntAPPRIS P1 TSL 5 BASIC5.46□□□□□ -1.54
LIG3P49916 CKAP2-207ENST00000490903 3395 ntAPPRIS ALT2 TSL 2 BASIC5.46□□□□□ -1.54
LIG3P49916 SAMSN1-206ENST00000619120 2028 ntTSL 1 (best) BASIC5.46□□□□□ -1.54
LIG3P49916 C1orf140-202ENST00000439004 4340 ntTSL 1 (best) BASIC5.46□□□□□ -1.54
LIG3P49916 SLC35A1-201ENST00000369552 1851 ntAPPRIS P1 TSL 1 (best) BASIC5.45□□□□□ -1.54
LIG3P49916 IPO5-201ENST00000261574 6003 ntTSL 1 (best) BASIC5.45□□□□□ -1.54
LIG3P49916 EPHA4-202ENST00000409854 3454 ntTSL 1 (best) BASIC5.45□□□□□ -1.54
LIG3P49916 RNF182-207ENST00000537663 3382 ntAPPRIS P1 TSL 4 BASIC5.45□□□□□ -1.54
LIG3P49916 CCPG1-202ENST00000425574 1945 ntTSL 2 BASIC5.45□□□□□ -1.54
LIG3P49916 ACE2-202ENST00000427411 3507 ntAPPRIS P1 TSL 1 (best) BASIC5.45□□□□□ -1.54
LIG3P49916 ELF2-203ENST00000379550 3278 ntTSL 5 BASIC5.45□□□□□ -1.54
LIG3P49916 C6orf10-205ENST00000527965 2076 ntAPPRIS ALT2 TSL 2 BASIC5.45□□□□□ -1.54
LIG3P49916 MIR133B-201ENST00000362210 119 ntBASIC5.45□□□□□ -1.54
LIG3P49916 RNU6-511P-201ENST00000363496 107 ntBASIC5.45□□□□□ -1.54
LIG3P49916 RNU6-1078P-201ENST00000364522 103 ntBASIC5.45□□□□□ -1.54
LIG3P49916 RNU4-20P-201ENST00000365601 151 ntBASIC5.45□□□□□ -1.54
LIG3P49916 SNORD51-201ENST00000384320 80 ntBASIC5.45□□□□□ -1.54
LIG3P49916 Y_RNA.474-201ENST00000384341 102 ntBASIC5.45□□□□□ -1.54
LIG3P49916 AL133388.1-201ENST00000404509 287 ntBASIC5.45□□□□□ -1.54
LIG3P49916 MIR1286-201ENST00000408112 78 ntBASIC5.45□□□□□ -1.54
LIG3P49916 MIR1178-201ENST00000408396 91 ntBASIC5.45□□□□□ -1.54
LIG3P49916 RN7SKP16-201ENST00000410180 299 ntBASIC5.45□□□□□ -1.54
LIG3P49916 RNU2-39P-201ENST00000410604 198 ntBASIC5.45□□□□□ -1.54
LIG3P49916 AF015720.1-201ENST00000412240 349 ntTSL 3 BASIC5.45□□□□□ -1.54
LIG3P49916 AL161631.1-201ENST00000417933 486 ntBASIC5.45□□□□□ -1.54
LIG3P49916 LINC01389-201ENST00000420876 483 ntTSL 3 BASIC5.45□□□□□ -1.54
LIG3P49916 AL035634.1-201ENST00000446768 372 ntTSL 2 BASIC5.45□□□□□ -1.54
LIG3P49916 AL445524.1-204ENST00000454631 458 ntTSL 3 BASIC5.45□□□□□ -1.54
Retrieved 100 of 98,524 protein–RNA pairs in 81.9 ms