Protein–RNA interactions for Protein: P47902

CDX1, Homeobox protein CDX-1, humanhuman

Predicted RBP Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1P47902 LLPH-201ENST00000266604 7746 ntAPPRIS P1 TSL 1 (best) BASIC3.37□□□□□ -1.87
CDX1P47902 PPIP5K2-217ENST00000627916 6010 ntAPPRIS ALT2 TSL 5 BASIC3.36□□□□□ -1.87
CDX1P47902 AL645937.1-201ENST00000641739 1652 ntBASIC3.36□□□□□ -1.87
CDX1P47902 GABRG2-210ENST00000638772 7669 ntTSL 5 BASIC3.36□□□□□ -1.87
CDX1P47902 CCDC178-205ENST00000406524 3039 ntAPPRIS ALT2 TSL 5 BASIC3.36□□□□□ -1.87
CDX1P47902 AC087359.1-201ENST00000508335 1740 ntBASIC3.36□□□□□ -1.87
CDX1P47902 EFR3A-208ENST00000637848 2547 ntTSL 5 BASIC3.36□□□□□ -1.87
CDX1P47902 AC116096.1-201ENST00000566804 2314 ntBASIC3.36□□□□□ -1.87
CDX1P47902 CENPJ-205ENST00000545981 4299 ntTSL 2 BASIC3.36□□□□□ -1.87
CDX1P47902 EVI5-201ENST00000370331 7403 ntAPPRIS P3 TSL 1 (best) BASIC3.36□□□□□ -1.87
CDX1P47902 OR5W2-201ENST00000344514 933 ntAPPRIS P1 BASIC3.36□□□□□ -1.87
CDX1P47902 RNU6-97P-201ENST00000363387 104 ntBASIC3.36□□□□□ -1.87
CDX1P47902 Y_RNA.234-201ENST00000364409 97 ntBASIC3.36□□□□□ -1.87
CDX1P47902 RN7SKP227-201ENST00000364445 330 ntBASIC3.36□□□□□ -1.87
CDX1P47902 CD84-204ENST00000368048 1098 ntAPPRIS ALT2 TSL 1 (best) BASIC3.36□□□□□ -1.87
CDX1P47902 TEX30-204ENST00000376027 1106 ntTSL 5 BASIC3.36□□□□□ -1.87
CDX1P47902 BPY2-202ENST00000382585 321 ntAPPRIS P5 TSL 1 (best) BASIC3.36□□□□□ -1.87
CDX1P47902 RNU6-328P-201ENST00000390887 106 ntBASIC3.36□□□□□ -1.87
CDX1P47902 HMGN2P8-201ENST00000391458 268 ntBASIC3.36□□□□□ -1.87
CDX1P47902 AL589642.2-201ENST00000413291 839 ntTSL 3 BASIC3.36□□□□□ -1.87
CDX1P47902 AC093157.1-203ENST00000416329 713 ntTSL 5 BASIC3.36□□□□□ -1.87
CDX1P47902 PTP4A1P5-201ENST00000420305 455 ntBASIC3.36□□□□□ -1.87
CDX1P47902 LINC01934-202ENST00000424170 686 ntTSL 4 BASIC3.36□□□□□ -1.87
CDX1P47902 MTCO1P39-201ENST00000426148 480 ntBASIC3.36□□□□□ -1.87
CDX1P47902 AC087650.1-201ENST00000431445 468 ntBASIC3.36□□□□□ -1.87
CDX1P47902 ZNF385D-AS2-201ENST00000436306 424 ntTSL 5 BASIC3.36□□□□□ -1.87
CDX1P47902 CYCSP43-201ENST00000438233 310 ntBASIC3.36□□□□□ -1.87
CDX1P47902 RPL23AP52-201ENST00000439311 478 ntBASIC3.36□□□□□ -1.87
CDX1P47902 LINC00529-201ENST00000443854 241 ntTSL 2 BASIC3.36□□□□□ -1.87
CDX1P47902 AC009950.1-206ENST00000445199 517 ntTSL 3 BASIC3.36□□□□□ -1.87
CDX1P47902 GSTA9P-202ENST00000448991 521 ntTSL 3 BASIC3.36□□□□□ -1.87
CDX1P47902 HMGB3P8-201ENST00000449709 577 ntBASIC3.36□□□□□ -1.87
CDX1P47902 AC234775.1-201ENST00000454247 670 ntBASIC3.36□□□□□ -1.87
CDX1P47902 MTCO3P16-201ENST00000454456 754 ntBASIC3.36□□□□□ -1.87
CDX1P47902 RPL23AP81-201ENST00000455252 467 ntBASIC3.36□□□□□ -1.87
CDX1P47902 AL137847.2-201ENST00000458111 527 ntTSL 3 BASIC3.36□□□□□ -1.87
CDX1P47902 CDKN3-205ENST00000458126 845 ntAPPRIS ALT2 TSL 5 BASIC3.36□□□□□ -1.87
CDX1P47902 SAR1B-204ENST00000502539 708 ntTSL 5 BASIC3.36□□□□□ -1.87
CDX1P47902 AC113404.3-201ENST00000506621 555 ntTSL 5 BASIC3.36□□□□□ -1.87
CDX1P47902 HMGB3P15-201ENST00000507326 574 ntBASIC3.36□□□□□ -1.87
CDX1P47902 AC108043.1-201ENST00000512696 574 ntBASIC3.36□□□□□ -1.87
CDX1P47902 RNA5SP468-201ENST00000516782 93 ntBASIC3.36□□□□□ -1.87
CDX1P47902 RNU6-714P-201ENST00000516963 103 ntBASIC3.36□□□□□ -1.87
CDX1P47902 Y_RNA.717-201ENST00000517106 92 ntBASIC3.36□□□□□ -1.87
CDX1P47902 IGKV2-23-201ENST00000518729 323 ntBASIC3.36□□□□□ -1.87
CDX1P47902 AC103783.1-201ENST00000520506 373 ntBASIC3.36□□□□□ -1.87
CDX1P47902 AC026991.1-201ENST00000520815 463 ntTSL 3 BASIC3.36□□□□□ -1.87
CDX1P47902 IGKV2D-19-201ENST00000523346 262 ntBASIC3.36□□□□□ -1.87
CDX1P47902 AP003730.1-201ENST00000524605 285 ntBASIC3.36□□□□□ -1.87
CDX1P47902 LRRC34P1-201ENST00000542742 915 ntBASIC3.36□□□□□ -1.87
CDX1P47902 LINC01479-202ENST00000546170 444 ntTSL 2 BASIC3.36□□□□□ -1.87
CDX1P47902 AC051619.4-201ENST00000560034 292 ntTSL 5 BASIC3.36□□□□□ -1.87
CDX1P47902 RPL23AP97-201ENST00000568955 471 ntBASIC3.36□□□□□ -1.87
CDX1P47902 MIR3186-201ENST00000577404 85 ntBASIC3.36□□□□□ -1.87
CDX1P47902 AL353997.4-201ENST00000586196 166 ntBASIC3.36□□□□□ -1.87
CDX1P47902 ZEB2-AS1-204ENST00000595109 855 ntTSL 5 BASIC3.36□□□□□ -1.87
CDX1P47902 AC006254.3-201ENST00000603353 884 ntBASIC3.36□□□□□ -1.87
CDX1P47902 AC103710.3-201ENST00000608157 948 ntBASIC3.36□□□□□ -1.87
CDX1P47902 AL391497.1-201ENST00000608671 547 ntBASIC3.36□□□□□ -1.87
CDX1P47902 AC090425.2-201ENST00000608818 501 ntBASIC3.36□□□□□ -1.87
CDX1P47902 AC128687.2-201ENST00000609657 566 ntBASIC3.36□□□□□ -1.87
CDX1P47902 Metazoa_SRP.117-201ENST00000615106 292 ntBASIC3.36□□□□□ -1.87
CDX1P47902 BPY2B-204ENST00000615850 321 ntAPPRIS P5 TSL 1 (best) BASIC3.36□□□□□ -1.87
CDX1P47902 MALAT1-210ENST00000617489 318 ntTSL 2 BASIC3.36□□□□□ -1.87
CDX1P47902 BPY2C-204ENST00000618574 321 ntAPPRIS P5 TSL 1 (best) BASIC3.36□□□□□ -1.87
CDX1P47902 AC019278.1-201ENST00000623516 479 ntBASIC3.36□□□□□ -1.87
CDX1P47902 AC095031.1-201ENST00000623685 672 ntBASIC3.36□□□□□ -1.87
CDX1P47902 AC009039.2-201ENST00000624524 529 ntBASIC3.36□□□□□ -1.87
CDX1P47902 MYCBP2-AS1-209ENST00000631152 412 ntTSL 5 BASIC3.36□□□□□ -1.87
CDX1P47902 FP325313.1-201ENST00000638228 703 ntBASIC3.36□□□□□ -1.87
CDX1P47902 AL672296.1-201ENST00000427780 2158 ntBASIC3.36□□□□□ -1.87
CDX1P47902 LINC01902-202ENST00000636983 4607 ntTSL 5 BASIC3.36□□□□□ -1.87
CDX1P47902 LRRC9-202ENST00000445360 4717 ntAPPRIS P1 TSL 5 BASIC3.36□□□□□ -1.87
CDX1P47902 SPAM1-202ENST00000340011 2349 ntAPPRIS P4 TSL 1 (best) BASIC3.36□□□□□ -1.87
CDX1P47902 DNAJC10-201ENST00000264065 20129 ntAPPRIS P1 TSL 1 (best) BASIC3.36□□□□□ -1.87
CDX1P47902 CCDC30-203ENST00000428554 3063 ntAPPRIS P2 TSL 5 BASIC3.35□□□□□ -1.87
CDX1P47902 AGTR2-201ENST00000371906 2882 ntAPPRIS P1 TSL 1 (best) BASIC3.35□□□□□ -1.87
CDX1P47902 AC025164.2-202ENST00000499685 5699 ntTSL 3 BASIC3.35□□□□□ -1.87
CDX1P47902 PPHLN1-208ENST00000449194 1583 ntAPPRIS ALT1 TSL 1 (best) BASIC3.35□□□□□ -1.87
CDX1P47902 ERBIN-212ENST00000508515 4374 ntTSL 5 BASIC3.35□□□□□ -1.87
CDX1P47902 WDR72-201ENST00000360509 5887 ntAPPRIS P2 TSL 1 (best) BASIC3.35□□□□□ -1.87
CDX1P47902 RPL21P132-201ENST00000331267 462 ntBASIC3.35□□□□□ -1.87
CDX1P47902 MIR383-201ENST00000362257 73 ntBASIC3.35□□□□□ -1.87
CDX1P47902 RNU6-777P-201ENST00000364265 104 ntBASIC3.35□□□□□ -1.87
CDX1P47902 SNORD6-201ENST00000365444 73 ntBASIC3.35□□□□□ -1.87
CDX1P47902 RNA5SP88-201ENST00000365560 109 ntBASIC3.35□□□□□ -1.87
CDX1P47902 RNU6-723P-201ENST00000383973 107 ntBASIC3.35□□□□□ -1.87
CDX1P47902 RNU6-1207P-201ENST00000384343 107 ntBASIC3.35□□□□□ -1.87
CDX1P47902 SNORA70C-201ENST00000384538 135 ntBASIC3.35□□□□□ -1.87
CDX1P47902 TRAV8-1-201ENST00000390430 473 ntAPPRIS P1 BASIC3.35□□□□□ -1.87
CDX1P47902 RPS26P8-201ENST00000393490 348 ntBASIC3.35□□□□□ -1.87
CDX1P47902 AL356421.1-201ENST00000403255 413 ntBASIC3.35□□□□□ -1.87
CDX1P47902 MRPL30-202ENST00000409145 562 ntTSL 2 BASIC3.35□□□□□ -1.87
CDX1P47902 SLC8A1-AS1-201ENST00000413479 800 ntTSL 5 BASIC3.35□□□□□ -1.87
CDX1P47902 AC098592.1-201ENST00000419352 333 ntBASIC3.35□□□□□ -1.87
CDX1P47902 AC064875.1-202ENST00000421112 561 ntTSL 4 BASIC3.35□□□□□ -1.87
CDX1P47902 AL138760.1-201ENST00000423283 435 ntTSL 3 BASIC3.35□□□□□ -1.87
CDX1P47902 RPL23AP38-201ENST00000423801 469 ntBASIC3.35□□□□□ -1.87
CDX1P47902 AL157831.1-201ENST00000426134 473 ntBASIC3.35□□□□□ -1.87
CDX1P47902 LINC01799-202ENST00000426260 625 ntTSL 3 BASIC3.35□□□□□ -1.87
Retrieved 100 of 98,524 protein–RNA pairs in 83.9 ms