Protein–RNA interactions for Protein: P12109

COL6A1, Collagen alpha-1(VI) chain, humanhuman

Predictions only

Length 1,028 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A1P12109 R3HDM1-201ENST00000264160 4648 ntAPPRIS P3 TSL 1 (best) BASIC5.17□□□□□ -1.58
COL6A1P12109 PPHLN1-208ENST00000449194 1583 ntAPPRIS ALT1 TSL 1 (best) BASIC5.16□□□□□ -1.58
COL6A1P12109 GHR-210ENST00000615111 4814 ntAPPRIS P1 TSL 5 BASIC5.16□□□□□ -1.58
COL6A1P12109 ZRANB2-201ENST00000254821 2821 ntAPPRIS ALT2 TSL 1 (best) BASIC5.16□□□□□ -1.58
COL6A1P12109 ARHGAP18-201ENST00000368149 4462 ntAPPRIS P1 TSL 1 (best) BASIC5.16□□□□□ -1.58
COL6A1P12109 RWDD2B-207ENST00000493196 3094 ntAPPRIS P1 TSL 1 (best) BASIC5.16□□□□□ -1.58
COL6A1P12109 AC006378.2-201ENST00000623178 2476 ntBASIC5.16□□□□□ -1.58
COL6A1P12109 C12orf60-201ENST00000330828 1684 ntAPPRIS P1 TSL 1 (best) BASIC5.16□□□□□ -1.58
COL6A1P12109 DNAJC16-210ENST00000616884 5882 ntTSL 1 (best) BASIC5.16□□□□□ -1.58
COL6A1P12109 Y_RNA.263-201ENST00000364659 114 ntBASIC5.16□□□□□ -1.58
COL6A1P12109 GTSF1L-202ENST00000373005 459 ntAPPRIS ALT2 TSL 3 BASIC5.16□□□□□ -1.58
COL6A1P12109 DEFB125-201ENST00000382410 587 ntAPPRIS P1 TSL 1 (best) BASIC5.16□□□□□ -1.58
COL6A1P12109 Y_RNA.535-201ENST00000384612 99 ntBASIC5.16□□□□□ -1.58
COL6A1P12109 MIR670-201ENST00000390142 98 ntBASIC5.16□□□□□ -1.58
COL6A1P12109 RNU6-780P-201ENST00000391030 104 ntBASIC5.16□□□□□ -1.58
COL6A1P12109 DSTNP4-201ENST00000399472 474 ntBASIC5.16□□□□□ -1.58
COL6A1P12109 BX295541.1-201ENST00000417774 250 ntBASIC5.16□□□□□ -1.58
COL6A1P12109 AL162726.4-201ENST00000422010 673 ntTSL 5 BASIC5.16□□□□□ -1.58
COL6A1P12109 AL513174.1-201ENST00000423182 629 ntBASIC5.16□□□□□ -1.58
COL6A1P12109 AC003084.1-201ENST00000427030 435 ntTSL 5 BASIC5.16□□□□□ -1.58
COL6A1P12109 FCF1P1-201ENST00000432690 571 ntBASIC5.16□□□□□ -1.58
COL6A1P12109 RPL23AP93-201ENST00000440847 484 ntBASIC5.16□□□□□ -1.58
COL6A1P12109 AC093019.1-201ENST00000443135 252 ntBASIC5.16□□□□□ -1.58
COL6A1P12109 AC009950.1-206ENST00000445199 517 ntTSL 3 BASIC5.16□□□□□ -1.58
COL6A1P12109 NDUFS5P3-201ENST00000450668 321 ntBASIC5.16□□□□□ -1.58
COL6A1P12109 AL391427.1-201ENST00000451575 425 ntTSL 3 BASIC5.16□□□□□ -1.58
COL6A1P12109 AL645939.1-201ENST00000453429 797 ntBASIC5.16□□□□□ -1.58
COL6A1P12109 LINC01206-205ENST00000490001 949 ntTSL 5 BASIC5.16□□□□□ -1.58
COL6A1P12109 AC112204.1-201ENST00000502591 103 ntBASIC5.16□□□□□ -1.58
COL6A1P12109 LYRM7-202ENST00000507584 317 ntTSL 2 BASIC5.16□□□□□ -1.58
COL6A1P12109 AC034234.1-202ENST00000508696 339 ntTSL 3 BASIC5.16□□□□□ -1.58
COL6A1P12109 AC096711.2-201ENST00000510592 454 ntTSL 5 BASIC5.16□□□□□ -1.58
COL6A1P12109 AC016598.2-201ENST00000514942 525 ntTSL 5 BASIC5.16□□□□□ -1.58
COL6A1P12109 AC010280.3-201ENST00000515504 587 ntTSL 4 BASIC5.16□□□□□ -1.58
COL6A1P12109 RNA5SP143-201ENST00000516936 115 ntBASIC5.16□□□□□ -1.58
COL6A1P12109 SOD1P3-201ENST00000518682 454 ntBASIC5.16□□□□□ -1.58
COL6A1P12109 IGLVVI-25-1-201ENST00000521893 249 ntBASIC5.16□□□□□ -1.58
COL6A1P12109 AF279873.1-201ENST00000523393 313 ntBASIC5.16□□□□□ -1.58
COL6A1P12109 STX3-204ENST00000530221 534 ntTSL 5 BASIC5.16□□□□□ -1.58
COL6A1P12109 AP002989.1-201ENST00000533459 562 ntTSL 4 BASIC5.16□□□□□ -1.58
COL6A1P12109 AC006206.2-202ENST00000537714 648 ntTSL 5 BASIC5.16□□□□□ -1.58
COL6A1P12109 AC073912.2-201ENST00000542821 317 ntTSL 3 BASIC5.16□□□□□ -1.58
COL6A1P12109 AC123904.3-201ENST00000547218 814 ntBASIC5.16□□□□□ -1.58
COL6A1P12109 RPL21P5-201ENST00000554662 472 ntBASIC5.16□□□□□ -1.58
COL6A1P12109 MIR4307-201ENST00000582802 84 ntBASIC5.16□□□□□ -1.58
COL6A1P12109 AC009704.1-201ENST00000583702 331 ntTSL 5 BASIC5.16□□□□□ -1.58
COL6A1P12109 AC104010.1-201ENST00000616889 150 ntBASIC5.16□□□□□ -1.58
COL6A1P12109 AC112200.1-201ENST00000625015 234 ntBASIC5.16□□□□□ -1.58
COL6A1P12109 PISRT1-201ENST00000626175 531 ntBASIC5.16□□□□□ -1.58
COL6A1P12109 MIR1321-201ENST00000637766 79 ntBASIC5.16□□□□□ -1.58
COL6A1P12109 CKAP5-202ENST00000354558 6428 ntTSL 1 (best) BASIC5.16□□□□□ -1.58
COL6A1P12109 EIF3E-201ENST00000220849 1543 ntAPPRIS P1 TSL 1 (best) BASIC5.16□□□□□ -1.58
COL6A1P12109 ZNF733P-201ENST00000331425 1506 ntTSL 1 (best) BASIC5.16□□□□□ -1.58
COL6A1P12109 OR4E1-202ENST00000641792 3742 ntAPPRIS P5 BASIC5.16□□□□□ -1.58
COL6A1P12109 PSMA4-201ENST00000044462 4411 ntAPPRIS P1 TSL 1 (best) BASIC5.16□□□□□ -1.58
COL6A1P12109 PTPN13-209ENST00000511467 8076 ntAPPRIS P4 TSL 2 BASIC5.16□□□□□ -1.58
COL6A1P12109 POF1B-201ENST00000262753 3941 ntAPPRIS P3 TSL 1 (best) BASIC5.16□□□□□ -1.58
COL6A1P12109 RPGRIP1L-201ENST00000262135 8195 ntAPPRIS P3 TSL 5 BASIC5.15□□□□□ -1.58
COL6A1P12109 AHNAK-202ENST00000378024 18787 ntAPPRIS P3 TSL 2 BASIC5.15□□□□□ -1.58
COL6A1P12109 LRP1B-201ENST00000389484 16535 ntAPPRIS P1 TSL 1 (best) BASIC5.15□□□□□ -1.58
COL6A1P12109 PIGN-245ENST00000640252 7924 ntAPPRIS P1 TSL 1 (best) BASIC5.15□□□□□ -1.58
COL6A1P12109 AC083843.3-201ENST00000623679 2186 ntBASIC5.15□□□□□ -1.58
COL6A1P12109 TET2-202ENST00000305737 9233 ntTSL 1 (best) BASIC5.15□□□□□ -1.58
COL6A1P12109 POLR2B-201ENST00000314595 3748 ntAPPRIS P1 TSL 1 (best) BASIC5.15□□□□□ -1.58
COL6A1P12109 RIMS1-206ENST00000425662 2799 ntTSL 1 (best) BASIC5.15□□□□□ -1.58
COL6A1P12109 LINC01923-203ENST00000456248 2528 ntTSL 2 BASIC5.15□□□□□ -1.58
COL6A1P12109 AC107081.3-201ENST00000612715 2034 ntBASIC5.15□□□□□ -1.58
COL6A1P12109 HSFY1-202ENST00000309834 1038 ntAPPRIS ALT2 TSL 1 (best) BASIC5.15□□□□□ -1.59
COL6A1P12109 SNRPEP3-201ENST00000338402 276 ntBASIC5.15□□□□□ -1.59
COL6A1P12109 HSFY2-202ENST00000344884 1038 ntAPPRIS ALT2 TSL 1 (best) BASIC5.15□□□□□ -1.59
COL6A1P12109 RNU6-1085P-201ENST00000363576 107 ntBASIC5.15□□□□□ -1.59
COL6A1P12109 FAM26F-203ENST00000368606 546 ntTSL 3 BASIC5.15□□□□□ -1.59
COL6A1P12109 SNORA70E-201ENST00000384492 135 ntBASIC5.15□□□□□ -1.59
COL6A1P12109 AL590762.2-201ENST00000395798 571 ntBASIC5.15□□□□□ -1.59
COL6A1P12109 RPL21P67-201ENST00000402896 478 ntBASIC5.15□□□□□ -1.59
COL6A1P12109 SNORA11F-201ENST00000408237 128 ntBASIC5.15□□□□□ -1.59
COL6A1P12109 MIR320C1-201ENST00000408566 88 ntBASIC5.15□□□□□ -1.59
COL6A1P12109 Y_RNA.608-201ENST00000410647 95 ntBASIC5.15□□□□□ -1.59
COL6A1P12109 RPS3AP9-201ENST00000417027 792 ntBASIC5.15□□□□□ -1.59
COL6A1P12109 AL132765.1-201ENST00000434165 553 ntBASIC5.15□□□□□ -1.59
COL6A1P12109 KCND3-IT1-201ENST00000439736 376 ntTSL 3 BASIC5.15□□□□□ -1.59
COL6A1P12109 AC003991.1-205ENST00000447758 625 ntTSL 5 BASIC5.15□□□□□ -1.59
COL6A1P12109 AL358232.1-201ENST00000448030 501 ntBASIC5.15□□□□□ -1.59
COL6A1P12109 FABP3P2-201ENST00000453169 399 ntBASIC5.15□□□□□ -1.59
COL6A1P12109 RPS20P24-201ENST00000457473 361 ntBASIC5.15□□□□□ -1.59
COL6A1P12109 AC023598.1-201ENST00000472521 361 ntBASIC5.15□□□□□ -1.59
COL6A1P12109 AC114786.4-201ENST00000508771 728 ntBASIC5.15□□□□□ -1.59
COL6A1P12109 AC097460.1-201ENST00000514624 590 ntTSL 3 BASIC5.15□□□□□ -1.59
COL6A1P12109 MS4A13-204ENST00000527948 790 ntTSL 1 (best) BASIC5.15□□□□□ -1.59
COL6A1P12109 FAM92A1P1-201ENST00000528023 890 ntBASIC5.15□□□□□ -1.59
COL6A1P12109 ZNF84-205ENST00000535439 647 ntTSL 5 BASIC5.15□□□□□ -1.59
COL6A1P12109 LINC02460-201ENST00000543558 536 ntTSL 4 BASIC5.15□□□□□ -1.59
COL6A1P12109 SLC12A1-210ENST00000561031 735 ntTSL 2 BASIC5.15□□□□□ -1.59
COL6A1P12109 AC025678.1-201ENST00000567861 338 ntBASIC5.15□□□□□ -1.59
COL6A1P12109 MIR4660-201ENST00000583549 74 ntBASIC5.15□□□□□ -1.59
COL6A1P12109 AC005261.5-201ENST00000596280 355 ntBASIC5.15□□□□□ -1.59
COL6A1P12109 AC092364.1-201ENST00000598561 471 ntTSL 3 BASIC5.15□□□□□ -1.59
COL6A1P12109 IGKV1OR2-118-201ENST00000603238 347 ntBASIC5.15□□□□□ -1.59
COL6A1P12109 AL359999.1-201ENST00000604513 294 ntBASIC5.15□□□□□ -1.59
COL6A1P12109 AC113194.1-201ENST00000606037 500 ntBASIC5.15□□□□□ -1.59
Retrieved 100 of 98,524 protein–RNA pairs in 113.9 ms