Protein–RNA interactions for Protein: P09017

HOXC4, Homeobox protein Hox-C4, humanhuman

Predicted RBP Predictions only

Length 264 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC4P09017 EIF5P1-201ENST00000400019 1231 ntBASIC3.16□□□□□ -1.9
HOXC4P09017 AL355379.1-201ENST00000405542 640 ntBASIC3.16□□□□□ -1.9
HOXC4P09017 ATF1P1-201ENST00000406040 927 ntBASIC3.16□□□□□ -1.9
HOXC4P09017 AL355615.1-201ENST00000406187 641 ntBASIC3.16□□□□□ -1.9
HOXC4P09017 AC005162.2-201ENST00000411479 578 ntTSL 4 BASIC3.16□□□□□ -1.9
HOXC4P09017 VN1R51P-201ENST00000411675 945 ntBASIC3.16□□□□□ -1.9
HOXC4P09017 AC092745.2-202ENST00000411880 369 ntBASIC3.16□□□□□ -1.9
HOXC4P09017 PCDH9-AS2-201ENST00000419371 538 ntTSL 3 BASIC3.16□□□□□ -1.9
HOXC4P09017 AC023128.2-201ENST00000420880 1223 ntBASIC3.16□□□□□ -1.9
HOXC4P09017 AC091390.3-201ENST00000426478 338 ntBASIC3.16□□□□□ -1.9
HOXC4P09017 UBE2E2-AS1-202ENST00000430018 499 ntTSL 2 BASIC3.16□□□□□ -1.9
HOXC4P09017 Z83839.2-201ENST00000436294 274 ntTSL 5 BASIC3.16□□□□□ -1.9
HOXC4P09017 AL050349.1-201ENST00000441029 401 ntTSL 2 BASIC3.16□□□□□ -1.9
HOXC4P09017 C1orf143-201ENST00000443836 762 ntTSL 2 BASIC3.16□□□□□ -1.9
HOXC4P09017 AC007179.2-204ENST00000444001 765 ntTSL 3 BASIC3.16□□□□□ -1.9
HOXC4P09017 MRPL35P4-201ENST00000453682 566 ntBASIC3.16□□□□□ -1.9
HOXC4P09017 AP001992.1-205ENST00000462248 379 ntBASIC3.16□□□□□ -1.9
HOXC4P09017 RPS27P29-201ENST00000463110 252 ntBASIC3.16□□□□□ -1.9
HOXC4P09017 S100A11P2-201ENST00000467589 312 ntBASIC3.16□□□□□ -1.9
HOXC4P09017 RPS29P2-201ENST00000479278 136 ntBASIC3.16□□□□□ -1.9
HOXC4P09017 AC008565.1-201ENST00000509046 885 ntBASIC3.16□□□□□ -1.9
HOXC4P09017 AC008885.2-201ENST00000509506 930 ntBASIC3.16□□□□□ -1.9
HOXC4P09017 AC008871.1-201ENST00000510935 398 ntTSL 3 BASIC3.16□□□□□ -1.9
HOXC4P09017 AC103726.1-201ENST00000520785 474 ntTSL 2 BASIC3.16□□□□□ -1.9
HOXC4P09017 AC090802.1-201ENST00000520870 445 ntTSL 2 BASIC3.16□□□□□ -1.9
HOXC4P09017 AP001636.2-201ENST00000525517 696 ntBASIC3.16□□□□□ -1.9
HOXC4P09017 OR5D17P-201ENST00000531492 978 ntBASIC3.16□□□□□ -1.9
HOXC4P09017 AP000857.2-201ENST00000532123 419 ntTSL 3 BASIC3.16□□□□□ -1.9
HOXC4P09017 MTND3P12-201ENST00000559068 328 ntBASIC3.16□□□□□ -1.9
HOXC4P09017 AC090888.2-201ENST00000559765 1144 ntBASIC3.16□□□□□ -1.9
HOXC4P09017 AC016134.1-201ENST00000565259 701 ntTSL 3 BASIC3.16□□□□□ -1.9
HOXC4P09017 AC090618.1-201ENST00000571972 585 ntTSL 2 BASIC3.16□□□□□ -1.9
HOXC4P09017 AC010928.3-201ENST00000587712 541 ntBASIC3.16□□□□□ -1.9
HOXC4P09017 AC087683.2-201ENST00000611384 326 ntBASIC3.16□□□□□ -1.9
HOXC4P09017 CYCSP41-201ENST00000616920 296 ntBASIC3.16□□□□□ -1.9
HOXC4P09017 AC018926.3-201ENST00000618841 406 ntBASIC3.16□□□□□ -1.9
HOXC4P09017 AL590396.4-201ENST00000636779 956 ntBASIC3.16□□□□□ -1.9
HOXC4P09017 CCSER2-201ENST00000224756 7664 ntAPPRIS P1 TSL 5 BASIC3.16□□□□□ -1.9
HOXC4P09017 PRKAA2-201ENST00000371244 9347 ntAPPRIS P2 TSL 1 (best) BASIC3.16□□□□□ -1.9
HOXC4P09017 MTCO1P18-201ENST00000455518 1419 ntBASIC3.16□□□□□ -1.9
HOXC4P09017 MTND5P11-201ENST00000511037 1812 ntBASIC3.16□□□□□ -1.9
HOXC4P09017 DPP10-205ENST00000410059 6278 ntAPPRIS ALT2 TSL 1 (best) BASIC3.16□□□□□ -1.9
HOXC4P09017 TCF12-203ENST00000343827 3956 ntTSL 1 (best) BASIC3.15□□□□□ -1.9
HOXC4P09017 GLIPR1L1-201ENST00000312442 1132 ntAPPRIS P3 TSL 1 (best) BASIC3.15□□□□□ -1.91
HOXC4P09017 RNU5E-10P-201ENST00000363506 118 ntBASIC3.15□□□□□ -1.91
HOXC4P09017 RNU6-525P-201ENST00000363685 104 ntBASIC3.15□□□□□ -1.91
HOXC4P09017 RNU6-207P-201ENST00000384137 107 ntBASIC3.15□□□□□ -1.91
HOXC4P09017 AC012498.1-201ENST00000424037 437 ntBASIC3.15□□□□□ -1.91
HOXC4P09017 ZFY-AS1-202ENST00000431145 419 ntTSL 3 BASIC3.15□□□□□ -1.91
HOXC4P09017 ELOCP13-201ENST00000443934 329 ntBASIC3.15□□□□□ -1.91
HOXC4P09017 DIAPH2-AS1-202ENST00000445414 606 ntTSL 2 BASIC3.15□□□□□ -1.91
HOXC4P09017 AC098826.2-201ENST00000452011 651 ntBASIC3.15□□□□□ -1.91
HOXC4P09017 AC010976.1-211ENST00000454503 644 ntTSL 2 BASIC3.15□□□□□ -1.91
HOXC4P09017 AC107021.1-202ENST00000480247 555 ntTSL 5 BASIC3.15□□□□□ -1.91
HOXC4P09017 AC093523.1-201ENST00000503268 499 ntTSL 3 BASIC3.15□□□□□ -1.91
HOXC4P09017 AC096576.3-201ENST00000505528 721 ntTSL 5 BASIC3.15□□□□□ -1.91
HOXC4P09017 TXNP6-201ENST00000510190 310 ntBASIC3.15□□□□□ -1.91
HOXC4P09017 RFESD-208ENST00000513950 464 ntTSL 5 BASIC3.15□□□□□ -1.91
HOXC4P09017 RNA5SP380-201ENST00000517190 98 ntBASIC3.15□□□□□ -1.91
HOXC4P09017 MAL2-205ENST00000521048 575 ntTSL 4 BASIC3.15□□□□□ -1.91
HOXC4P09017 PSMA2P1-201ENST00000526365 646 ntBASIC3.15□□□□□ -1.91
HOXC4P09017 AP001999.2-201ENST00000529417 389 ntTSL 3 BASIC3.15□□□□□ -1.91
HOXC4P09017 IFNG-AS1-201ENST00000536914 494 ntTSL 5 BASIC3.15□□□□□ -1.91
HOXC4P09017 CACNA1C-AS4-201ENST00000544415 735 ntTSL 3 BASIC3.15□□□□□ -1.91
HOXC4P09017 AC008147.1-201ENST00000551284 325 ntTSL 3 BASIC3.15□□□□□ -1.91
HOXC4P09017 OR4T1P-201ENST00000554933 911 ntBASIC3.15□□□□□ -1.91
HOXC4P09017 AC138907.2-201ENST00000561479 866 ntTSL 3 BASIC3.15□□□□□ -1.91
HOXC4P09017 AC145350.4-201ENST00000562827 866 ntTSL 3 BASIC3.15□□□□□ -1.91
HOXC4P09017 AC133485.5-201ENST00000563407 866 ntTSL 3 BASIC3.15□□□□□ -1.91
HOXC4P09017 AC007598.2-201ENST00000569490 539 ntTSL 3 BASIC3.15□□□□□ -1.91
HOXC4P09017 MIR4509-3-201ENST00000578671 94 ntBASIC3.15□□□□□ -1.91
HOXC4P09017 MIR4509-2-201ENST00000583920 94 ntBASIC3.15□□□□□ -1.91
HOXC4P09017 AC009159.2-201ENST00000617603 606 ntBASIC3.15□□□□□ -1.91
HOXC4P09017 MIR4509-1-201ENST00000618224 94 ntBASIC3.15□□□□□ -1.91
HOXC4P09017 AC026422.1-201ENST00000623961 452 ntBASIC3.15□□□□□ -1.91
HOXC4P09017 AL109659.3-201ENST00000624985 950 ntBASIC3.15□□□□□ -1.91
HOXC4P09017 MIR4278-201ENST00000636094 69 ntBASIC3.15□□□□□ -1.91
HOXC4P09017 AL157700.1-201ENST00000561973 1432 ntBASIC3.15□□□□□ -1.91
HOXC4P09017 MTND5P27-201ENST00000428871 1720 ntBASIC3.15□□□□□ -1.91
HOXC4P09017 AL079305.1-201ENST00000623159 3008 ntBASIC3.15□□□□□ -1.91
HOXC4P09017 AC008432.1-201ENST00000615912 1320 ntBASIC3.15□□□□□ -1.91
HOXC4P09017 SEC63P2-201ENST00000503863 1939 ntBASIC3.15□□□□□ -1.91
HOXC4P09017 PPIP5K2-203ENST00000414217 5842 ntAPPRIS P3 TSL 1 (best) BASIC3.15□□□□□ -1.91
HOXC4P09017 MACF1-201ENST00000289893 19141 ntTSL 5 BASIC3.15□□□□□ -1.91
HOXC4P09017 AC093908.1-201ENST00000623125 8092 ntBASIC3.15□□□□□ -1.91
HOXC4P09017 SYNE1-201ENST00000341594 26584 ntAPPRIS ALT2 TSL 5 BASIC3.14□□□□□ -1.91
HOXC4P09017 DICER1-203ENST00000526495 10331 ntAPPRIS P1 TSL 5 BASIC3.14□□□□□ -1.91
HOXC4P09017 MIS12-201ENST00000381165 2505 ntAPPRIS P1 TSL 1 (best) BASIC3.14□□□□□ -1.91
HOXC4P09017 RTKN2-201ENST00000315289 2383 ntTSL 2 BASIC3.14□□□□□ -1.91
HOXC4P09017 RNU6-543P-201ENST00000362576 108 ntBASIC3.14□□□□□ -1.91
HOXC4P09017 SNORA48.8-201ENST00000391324 134 ntBASIC3.14□□□□□ -1.91
HOXC4P09017 RNA5SP293-201ENST00000410527 113 ntBASIC3.14□□□□□ -1.91
HOXC4P09017 HMGB3P31-201ENST00000413333 595 ntBASIC3.14□□□□□ -1.91
HOXC4P09017 EI24P1-201ENST00000416584 867 ntBASIC3.14□□□□□ -1.91
HOXC4P09017 VPS26BP1-201ENST00000417155 755 ntBASIC3.14□□□□□ -1.91
HOXC4P09017 LURAP1L-AS1-201ENST00000417638 799 ntTSL 3 BASIC3.14□□□□□ -1.91
HOXC4P09017 AC005165.1-203ENST00000423689 1281 ntTSL 3 BASIC3.14□□□□□ -1.91
HOXC4P09017 PNRC2P1-201ENST00000423940 420 ntBASIC3.14□□□□□ -1.91
HOXC4P09017 ZNF736P7Y-201ENST00000425158 820 ntBASIC3.14□□□□□ -1.91
HOXC4P09017 AC092447.3-201ENST00000426027 686 ntBASIC3.14□□□□□ -1.91
Retrieved 100 of 98,524 protein–RNA pairs in 89.6 ms