Protein–RNA interactions for Protein: O60663

LMX1B, LIM homeobox transcription factor 1-beta, humanhuman

Predictions only

Length 402 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1BO60663 RN7SKP56-201ENST00000410513 331 ntBASIC3.62□□□□□ -1.83
LMX1BO60663 RNA5SP104-201ENST00000410989 118 ntBASIC3.62□□□□□ -1.83
LMX1BO60663 Z93403.1-201ENST00000411879 895 ntTSL 5 BASIC3.62□□□□□ -1.83
LMX1BO60663 AC234782.4-201ENST00000417646 1048 ntBASIC3.62□□□□□ -1.83
LMX1BO60663 RPL21P32-201ENST00000419877 477 ntBASIC3.62□□□□□ -1.83
LMX1BO60663 AC092484.1-201ENST00000420548 833 ntTSL 5 BASIC3.62□□□□□ -1.83
LMX1BO60663 AC006946.1-201ENST00000429106 328 ntBASIC3.62□□□□□ -1.83
LMX1BO60663 ZYG11AP1-201ENST00000430329 837 ntBASIC3.62□□□□□ -1.83
LMX1BO60663 AL117339.2-201ENST00000430475 180 ntBASIC3.62□□□□□ -1.83
LMX1BO60663 LINC00375-201ENST00000433074 601 ntTSL 5 BASIC3.62□□□□□ -1.83
LMX1BO60663 AC010881.1-201ENST00000433830 235 ntBASIC3.62□□□□□ -1.83
LMX1BO60663 AL603839.2-201ENST00000437060 546 ntTSL 5 BASIC3.62□□□□□ -1.83
LMX1BO60663 AL512326.1-201ENST00000443050 721 ntBASIC3.62□□□□□ -1.83
LMX1BO60663 AL138830.2-202ENST00000446358 786 ntTSL 2 BASIC3.62□□□□□ -1.83
LMX1BO60663 VN1R34P-201ENST00000447387 883 ntBASIC3.62□□□□□ -1.83
LMX1BO60663 LINC01069-201ENST00000452933 546 ntTSL 5 BASIC3.62□□□□□ -1.83
LMX1BO60663 RPL37P3-201ENST00000456825 293 ntBASIC3.62□□□□□ -1.83
LMX1BO60663 SNORD42A-201ENST00000459584 64 ntBASIC3.62□□□□□ -1.83
LMX1BO60663 APOOP2-201ENST00000461561 539 ntBASIC3.62□□□□□ -1.83
LMX1BO60663 C1GALT1C1L-201ENST00000475092 1172 ntAPPRIS P1 BASIC3.62□□□□□ -1.83
LMX1BO60663 AC093864.1-201ENST00000504555 745 ntTSL 5 BASIC3.62□□□□□ -1.83
LMX1BO60663 AC098868.1-201ENST00000512628 624 ntTSL 2 BASIC3.62□□□□□ -1.83
LMX1BO60663 SNORA67.7-201ENST00000516664 135 ntBASIC3.62□□□□□ -1.83
LMX1BO60663 snoU109.6-201ENST00000516831 118 ntBASIC3.62□□□□□ -1.83
LMX1BO60663 TRAPPC2P2-201ENST00000517589 409 ntBASIC3.62□□□□□ -1.83
LMX1BO60663 AC011377.1-201ENST00000517708 275 ntTSL 3 BASIC3.62□□□□□ -1.83
LMX1BO60663 OR4A45P-201ENST00000529954 901 ntBASIC3.62□□□□□ -1.83
LMX1BO60663 AC023796.2-201ENST00000545410 451 ntTSL 3 BASIC3.62□□□□□ -1.83
LMX1BO60663 AC068993.2-201ENST00000546563 395 ntTSL 5 BASIC3.62□□□□□ -1.83
LMX1BO60663 AC090502.2-201ENST00000549267 280 ntBASIC3.62□□□□□ -1.83
LMX1BO60663 AC087883.1-201ENST00000551882 391 ntBASIC3.62□□□□□ -1.83
LMX1BO60663 AL133241.1-201ENST00000556832 487 ntBASIC3.62□□□□□ -1.83
LMX1BO60663 ZNF519P3-201ENST00000557158 1032 ntBASIC3.62□□□□□ -1.83
LMX1BO60663 AC016987.2-201ENST00000560696 351 ntTSL 3 BASIC3.62□□□□□ -1.83
LMX1BO60663 AC010547.2-201ENST00000568523 409 ntTSL 5 BASIC3.62□□□□□ -1.83
LMX1BO60663 MIR3158-1-201ENST00000583596 81 ntBASIC3.62□□□□□ -1.83
LMX1BO60663 AC090771.2-201ENST00000588794 571 ntTSL 3 BASIC3.62□□□□□ -1.83
LMX1BO60663 SATB1-AS1-207ENST00000593741 955 ntTSL 5 BASIC3.62□□□□□ -1.83
LMX1BO60663 LINC00907-211ENST00000601948 795 ntTSL 5 BASIC3.62□□□□□ -1.83
LMX1BO60663 CEACAM7-204ENST00000602225 524 ntTSL 1 (best) BASIC3.62□□□□□ -1.83
LMX1BO60663 AC098614.4-201ENST00000607601 462 ntBASIC3.62□□□□□ -1.83
LMX1BO60663 AC109347.2-201ENST00000610220 349 ntBASIC3.62□□□□□ -1.83
LMX1BO60663 DAOA-AS1_2.2-201ENST00000610818 204 ntBASIC3.62□□□□□ -1.83
LMX1BO60663 PLCE1-AS2-211ENST00000613585 542 ntTSL 5 BASIC3.62□□□□□ -1.83
LMX1BO60663 AC027807.2-201ENST00000616099 408 ntBASIC3.62□□□□□ -1.83
LMX1BO60663 AC104010.1-201ENST00000616889 150 ntBASIC3.62□□□□□ -1.83
LMX1BO60663 DNAH12-202ENST00000351747 9542 ntTSL 5 BASIC3.62□□□□□ -1.83
LMX1BO60663 PIKFYVE-201ENST00000264380 9901 ntAPPRIS P1 TSL 1 (best) BASIC3.62□□□□□ -1.83
LMX1BO60663 CD200R1-204ENST00000471858 3679 ntAPPRIS ALT2 TSL 1 (best) BASIC3.62□□□□□ -1.83
LMX1BO60663 LINC02456-201ENST00000635615 1323 ntTSL 5 BASIC3.62□□□□□ -1.83
LMX1BO60663 DNAH6-201ENST00000237449 12666 ntAPPRIS P1 TSL 5 BASIC3.62□□□□□ -1.83
LMX1BO60663 HPGDS-201ENST00000295256 1636 ntAPPRIS P1 TSL 1 (best) BASIC3.62□□□□□ -1.83
LMX1BO60663 NCOA1-202ENST00000348332 6895 ntAPPRIS P4 TSL 1 (best) BASIC3.62□□□□□ -1.83
LMX1BO60663 USP9YP4-201ENST00000424401 1745 ntBASIC3.61□□□□□ -1.83
LMX1BO60663 CFTR-201ENST00000003084 6132 ntAPPRIS P1 TSL 1 (best) BASIC3.61□□□□□ -1.83
LMX1BO60663 RNF38-201ENST00000259605 5012 ntTSL 1 (best) BASIC3.61□□□□□ -1.83
LMX1BO60663 GALNT11-203ENST00000422997 2371 ntTSL 5 BASIC3.61□□□□□ -1.83
LMX1BO60663 ZNF726-205ENST00000575986 1522 ntTSL 1 (best) BASIC3.61□□□□□ -1.83
LMX1BO60663 KCNU1-201ENST00000399881 3695 ntAPPRIS P1 TSL 2 BASIC3.61□□□□□ -1.83
LMX1BO60663 SCEL-205ENST00000535157 3096 ntAPPRIS ALT2 TSL 2 BASIC3.61□□□□□ -1.83
LMX1BO60663 PIGN-240ENST00000639912 6530 ntTSL 5 BASIC3.61□□□□□ -1.83
LMX1BO60663 TPTE2-201ENST00000255310 1562 ntTSL 5 BASIC3.61□□□□□ -1.83
LMX1BO60663 UBE2D2-201ENST00000253815 444 ntAPPRIS ALT1 TSL 5 BASIC3.61□□□□□ -1.83
LMX1BO60663 C8orf59-201ENST00000321777 325 ntTSL 1 (best) BASIC3.61□□□□□ -1.83
LMX1BO60663 OR4G2P-201ENST00000328113 903 ntBASIC3.61□□□□□ -1.83
LMX1BO60663 MIR372-201ENST00000362225 67 ntBASIC3.61□□□□□ -1.83
LMX1BO60663 Y_RNA.248-201ENST00000364501 109 ntBASIC3.61□□□□□ -1.83
LMX1BO60663 GTSF1L-201ENST00000373003 835 ntAPPRIS P3 BASIC3.61□□□□□ -1.83
LMX1BO60663 GTSF1L-202ENST00000373005 459 ntAPPRIS ALT2 TSL 3 BASIC3.61□□□□□ -1.83
LMX1BO60663 BPY2-202ENST00000382585 321 ntAPPRIS P5 TSL 1 (best) BASIC3.61□□□□□ -1.83
LMX1BO60663 RNY3P14-201ENST00000384309 102 ntBASIC3.61□□□□□ -1.83
LMX1BO60663 RNA5SP171-201ENST00000391071 115 ntBASIC3.61□□□□□ -1.83
LMX1BO60663 MIR1179-201ENST00000408703 91 ntBASIC3.61□□□□□ -1.83
LMX1BO60663 SF3B1-202ENST00000409915 600 ntTSL 2 BASIC3.61□□□□□ -1.83
LMX1BO60663 AC004014.1-201ENST00000413406 538 ntTSL 4 BASIC3.61□□□□□ -1.83
LMX1BO60663 RPL6P29-201ENST00000414863 865 ntBASIC3.61□□□□□ -1.83
LMX1BO60663 RPS12P5-201ENST00000423449 371 ntBASIC3.61□□□□□ -1.83
LMX1BO60663 IPMKP1-201ENST00000425988 855 ntBASIC3.61□□□□□ -1.83
LMX1BO60663 AC024619.1-202ENST00000426489 495 ntTSL 3 BASIC3.61□□□□□ -1.83
LMX1BO60663 AC003071.1-201ENST00000451219 789 ntBASIC3.61□□□□□ -1.83
LMX1BO60663 FGF7P6-202ENST00000451282 293 ntBASIC3.61□□□□□ -1.83
LMX1BO60663 RNU6-1218P-201ENST00000458990 108 ntBASIC3.61□□□□□ -1.83
LMX1BO60663 AC004924.1-201ENST00000480160 781 ntBASIC3.61□□□□□ -1.83
LMX1BO60663 OR4G11P-201ENST00000492842 939 ntBASIC3.61□□□□□ -1.83
LMX1BO60663 RN7SL691P-201ENST00000494487 301 ntBASIC3.61□□□□□ -1.83
LMX1BO60663 KLRA1P-201ENST00000503499 986 ntBASIC3.61□□□□□ -1.83
LMX1BO60663 AC027343.1-201ENST00000504765 407 ntTSL 4 BASIC3.61□□□□□ -1.83
LMX1BO60663 AC018752.1-201ENST00000507813 206 ntTSL 5 BASIC3.61□□□□□ -1.83
LMX1BO60663 AC098587.1-201ENST00000508241 540 ntTSL 4 BASIC3.61□□□□□ -1.83
LMX1BO60663 AC008958.1-201ENST00000511047 682 ntBASIC3.61□□□□□ -1.83
LMX1BO60663 LINC02149-201ENST00000511443 558 ntTSL 1 (best) BASIC3.61□□□□□ -1.83
LMX1BO60663 LINC02014-201ENST00000514010 713 ntTSL 3 BASIC3.61□□□□□ -1.83
LMX1BO60663 RNA5SP49-201ENST00000516450 115 ntBASIC3.61□□□□□ -1.83
LMX1BO60663 RNU1-45P-201ENST00000517191 141 ntBASIC3.61□□□□□ -1.83
LMX1BO60663 AC113192.1-201ENST00000527270 321 ntTSL 3 BASIC3.61□□□□□ -1.83
LMX1BO60663 AC090124.2-201ENST00000527727 563 ntTSL 4 BASIC3.61□□□□□ -1.83
LMX1BO60663 AP002340.1-201ENST00000529298 285 ntTSL 3 BASIC3.61□□□□□ -1.83
LMX1BO60663 AC091047.1-201ENST00000533344 552 ntTSL 4 BASIC3.61□□□□□ -1.83
LMX1BO60663 SNHG1-208ENST00000538266 347 ntTSL 3 BASIC3.61□□□□□ -1.83
LMX1BO60663 AC133480.1-201ENST00000547563 381 ntTSL 3 BASIC3.61□□□□□ -1.83
Retrieved 100 of 98,524 protein–RNA pairs in 81.8 ms