Protein–RNA interactions for Protein: O15551

CLDN3, Claudin-3, humanhuman

Predictions only

Length 220 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLDN3O15551 LINC01004-201ENST00000445184 686 ntTSL 5 BASIC3.55□□□□□ -1.84
CLDN3O15551 AC017099.1-201ENST00000448261 1028 ntBASIC3.55□□□□□ -1.84
CLDN3O15551 HMGN1P18-201ENST00000457642 277 ntBASIC3.55□□□□□ -1.84
CLDN3O15551 AC108751.4-201ENST00000462931 1001 ntTSL 2 BASIC3.55□□□□□ -1.84
CLDN3O15551 CAB39P1-201ENST00000502277 460 ntBASIC3.55□□□□□ -1.84
CLDN3O15551 NREP-AS1-201ENST00000503242 411 ntTSL 3 BASIC3.55□□□□□ -1.84
CLDN3O15551 PAIP2-205ENST00000510080 858 ntAPPRIS P1 TSL 1 (best) BASIC3.55□□□□□ -1.84
CLDN3O15551 MTCYBP37-201ENST00000510642 1133 ntBASIC3.55□□□□□ -1.84
CLDN3O15551 AC136777.1-201ENST00000517765 369 ntTSL 4 BASIC3.55□□□□□ -1.84
CLDN3O15551 NRG1-IT3-201ENST00000519023 505 ntTSL 3 BASIC3.55□□□□□ -1.84
CLDN3O15551 ARL2BPP5-201ENST00000523141 481 ntBASIC3.55□□□□□ -1.84
CLDN3O15551 AC090539.1-201ENST00000523907 434 ntTSL 3 BASIC3.55□□□□□ -1.84
CLDN3O15551 PDCL2P2-201ENST00000533651 189 ntBASIC3.55□□□□□ -1.84
CLDN3O15551 AC078962.4-201ENST00000546135 254 ntTSL 3 BASIC3.55□□□□□ -1.84
CLDN3O15551 AL121603.1-201ENST00000553815 142 ntBASIC3.55□□□□□ -1.84
CLDN3O15551 AL358335.2-201ENST00000555693 487 ntTSL 3 BASIC3.55□□□□□ -1.84
CLDN3O15551 AC093519.1-201ENST00000566109 298 ntBASIC3.55□□□□□ -1.84
CLDN3O15551 LAMTOR5-AS1-203ENST00000585330 463 ntTSL 2 BASIC3.55□□□□□ -1.84
CLDN3O15551 AC104365.3-201ENST00000587011 625 ntTSL 5 BASIC3.55□□□□□ -1.84
CLDN3O15551 RPAP2P1-201ENST00000603626 1168 ntBASIC3.55□□□□□ -1.84
CLDN3O15551 RPL21P136-201ENST00000605378 396 ntBASIC3.55□□□□□ -1.84
CLDN3O15551 AP000238.1-201ENST00000608759 426 ntBASIC3.55□□□□□ -1.84
CLDN3O15551 AC006329.2-201ENST00000611491 394 ntBASIC3.55□□□□□ -1.84
CLDN3O15551 RNMT-206ENST00000589866 1879 ntAPPRIS P1 TSL 1 (best) BASIC3.55□□□□□ -1.84
CLDN3O15551 ZNF280D-201ENST00000267807 4328 ntAPPRIS P3 TSL 1 (best) BASIC3.55□□□□□ -1.84
CLDN3O15551 CEP83-202ENST00000397807 2737 ntTSL 5 BASIC3.54□□□□□ -1.84
CLDN3O15551 EVI5-208ENST00000540033 7436 ntAPPRIS ALT2 TSL 1 (best) BASIC3.54□□□□□ -1.84
CLDN3O15551 NFIB-202ENST00000380924 840 ntTSL 5 BASIC3.54□□□□□ -1.84
CLDN3O15551 DEFB109C-201ENST00000382575 264 ntBASIC3.54□□□□□ -1.84
CLDN3O15551 DEFB109B-201ENST00000382656 264 ntBASIC3.54□□□□□ -1.84
CLDN3O15551 RNU6-730P-201ENST00000383954 104 ntBASIC3.54□□□□□ -1.84
CLDN3O15551 RPL23AP47-201ENST00000408017 460 ntBASIC3.54□□□□□ -1.84
CLDN3O15551 RNU4-47P-201ENST00000410876 114 ntBASIC3.54□□□□□ -1.84
CLDN3O15551 RNU6-575P-201ENST00000411326 105 ntBASIC3.54□□□□□ -1.84
CLDN3O15551 AL669831.5-220ENST00000412115 581 ntTSL 3 BASIC3.54□□□□□ -1.84
CLDN3O15551 AL133384.1-201ENST00000412744 351 ntBASIC3.54□□□□□ -1.84
CLDN3O15551 AIMP1P1-201ENST00000418670 937 ntBASIC3.54□□□□□ -1.84
CLDN3O15551 UBXN7-204ENST00000428095 1173 ntTSL 1 (best) BASIC3.54□□□□□ -1.84
CLDN3O15551 MTCYBP15-201ENST00000433123 1127 ntBASIC3.54□□□□□ -1.84
CLDN3O15551 NEK4P1-201ENST00000433383 879 ntBASIC3.54□□□□□ -1.84
CLDN3O15551 AL020994.3-201ENST00000449126 274 ntTSL 3 BASIC3.54□□□□□ -1.84
CLDN3O15551 AL353148.1-203ENST00000452286 665 ntTSL 3 BASIC3.54□□□□□ -1.84
CLDN3O15551 NECAP1P2-201ENST00000455668 727 ntBASIC3.54□□□□□ -1.84
CLDN3O15551 RPL23AP14-201ENST00000468281 468 ntBASIC3.54□□□□□ -1.84
CLDN3O15551 AC108078.3-201ENST00000502633 489 ntBASIC3.54□□□□□ -1.84
CLDN3O15551 AC008948.1-201ENST00000506058 325 ntTSL 2 BASIC3.54□□□□□ -1.84
CLDN3O15551 LINC02113-201ENST00000510302 336 ntTSL 3 BASIC3.54□□□□□ -1.84
CLDN3O15551 LINC01088-208ENST00000511895 795 ntTSL 2 BASIC3.54□□□□□ -1.84
CLDN3O15551 AC109466.1-204ENST00000519570 717 ntTSL 3 BASIC3.54□□□□□ -1.84
CLDN3O15551 SKP1-210ENST00000522855 802 ntAPPRIS P4 TSL 2 BASIC3.54□□□□□ -1.84
CLDN3O15551 AP002833.1-201ENST00000530572 566 ntTSL 3 BASIC3.54□□□□□ -1.84
CLDN3O15551 OOSP2-203ENST00000532905 496 ntAPPRIS ALT2 TSL 3 BASIC3.54□□□□□ -1.84
CLDN3O15551 SOX5-AS1-201ENST00000539583 573 ntTSL 4 BASIC3.54□□□□□ -1.84
CLDN3O15551 AL355097.1-201ENST00000555889 539 ntTSL 4 BASIC3.54□□□□□ -1.84
CLDN3O15551 ZNF971P-201ENST00000562068 1249 ntBASIC3.54□□□□□ -1.84
CLDN3O15551 AL157402.2-201ENST00000566394 416 ntTSL 3 BASIC3.54□□□□□ -1.84
CLDN3O15551 AC010735.1-201ENST00000567305 1026 ntBASIC3.54□□□□□ -1.84
CLDN3O15551 AC003687.1-201ENST00000578040 427 ntTSL 3 BASIC3.54□□□□□ -1.84
CLDN3O15551 MIR5195-201ENST00000583555 115 ntBASIC3.54□□□□□ -1.84
CLDN3O15551 AC007673.1-201ENST00000590604 1100 ntTSL 5 BASIC3.54□□□□□ -1.84
CLDN3O15551 AC120053.1-201ENST00000607706 736 ntBASIC3.54□□□□□ -1.84
CLDN3O15551 AC009318.4-201ENST00000620496 486 ntBASIC3.54□□□□□ -1.84
CLDN3O15551 SATB1-AS1-258ENST00000629405 664 ntTSL 5 BASIC3.54□□□□□ -1.84
CLDN3O15551 AC139713.2-210ENST00000641741 992 ntBASIC3.54□□□□□ -1.84
CLDN3O15551 ALG6-201ENST00000263440 1895 ntAPPRIS ALT1 TSL 5 BASIC3.54□□□□□ -1.84
CLDN3O15551 C1D-201ENST00000355848 2233 ntAPPRIS P1 TSL 1 (best) BASIC3.54□□□□□ -1.84
CLDN3O15551 ADGRG4-203ENST00000394143 9931 ntAPPRIS P2 TSL 1 (best) BASIC3.54□□□□□ -1.84
CLDN3O15551 UBE2W-203ENST00000517608 8426 ntTSL 1 (best) BASIC3.54□□□□□ -1.84
CLDN3O15551 OR51L1-203ENST00000641819 7300 ntAPPRIS P1 BASIC3.54□□□□□ -1.84
CLDN3O15551 DCUN1D1-201ENST00000292782 7954 ntAPPRIS P1 TSL 1 (best) BASIC3.53□□□□□ -1.84
CLDN3O15551 WRN-201ENST00000298139 5215 ntAPPRIS P1 TSL 1 (best) BASIC3.53□□□□□ -1.84
CLDN3O15551 OR6C1-202ENST00000642104 2055 ntAPPRIS P1 BASIC3.53□□□□□ -1.84
CLDN3O15551 LINC01416-201ENST00000563553 2310 ntTSL 1 (best) BASIC3.53□□□□□ -1.84
CLDN3O15551 SPRR2D-203ENST00000368757 800 ntAPPRIS P1 TSL 3 BASIC3.53□□□□□ -1.84
CLDN3O15551 SPINK13-201ENST00000398450 509 ntAPPRIS P2 TSL 1 (best) BASIC3.53□□□□□ -1.84
CLDN3O15551 AL133264.1-201ENST00000407157 562 ntBASIC3.53□□□□□ -1.84
CLDN3O15551 RNA5SP229-201ENST00000410809 99 ntBASIC3.53□□□□□ -1.84
CLDN3O15551 AL136133.1-201ENST00000413694 376 ntBASIC3.53□□□□□ -1.84
CLDN3O15551 AC019070.1-201ENST00000415008 1024 ntBASIC3.53□□□□□ -1.84
CLDN3O15551 AC007271.1-201ENST00000428188 382 ntTSL 3 BASIC3.53□□□□□ -1.84
CLDN3O15551 CLEC5A-202ENST00000438351 743 ntTSL 3 BASIC3.53□□□□□ -1.84
CLDN3O15551 HMGB3P11-201ENST00000440127 604 ntBASIC3.53□□□□□ -1.84
CLDN3O15551 AC024908.1-202ENST00000441907 764 ntTSL 2 BASIC3.53□□□□□ -1.84
CLDN3O15551 Z99127.3-201ENST00000448158 395 ntBASIC3.53□□□□□ -1.84
CLDN3O15551 AL392046.1-203ENST00000450106 651 ntTSL 2 BASIC3.53□□□□□ -1.84
CLDN3O15551 DCLRE1CP1-201ENST00000454630 470 ntBASIC3.53□□□□□ -1.84
CLDN3O15551 snoU13.4-201ENST00000458916 104 ntBASIC3.53□□□□□ -1.84
CLDN3O15551 AC006148.2-201ENST00000467017 650 ntTSL 2 BASIC3.53□□□□□ -1.84
CLDN3O15551 AC093767.1-201ENST00000504523 156 ntBASIC3.53□□□□□ -1.84
CLDN3O15551 AC013799.1-201ENST00000531157 348 ntTSL 2 BASIC3.53□□□□□ -1.84
CLDN3O15551 AC011773.2-201ENST00000551479 285 ntTSL 5 BASIC3.53□□□□□ -1.84
CLDN3O15551 AL392023.2-202ENST00000555342 494 ntTSL 5 BASIC3.53□□□□□ -1.84
CLDN3O15551 CFL2-206ENST00000556161 546 ntTSL 4 BASIC3.53□□□□□ -1.84
CLDN3O15551 SMG1P7-203ENST00000573141 619 ntTSL 2 BASIC3.53□□□□□ -1.84
CLDN3O15551 AC090330.1-201ENST00000588646 764 ntBASIC3.53□□□□□ -1.84
CLDN3O15551 AC011518.1-202ENST00000592668 407 ntTSL 5 BASIC3.53□□□□□ -1.84
CLDN3O15551 YPEL5P2-201ENST00000605553 359 ntBASIC3.53□□□□□ -1.84
CLDN3O15551 AL442067.2-201ENST00000614033 363 ntBASIC3.53□□□□□ -1.84
CLDN3O15551 5S_rRNA.12-201ENST00000617631 107 ntBASIC3.53□□□□□ -1.84
CLDN3O15551 AC018755.4-201ENST00000619715 454 ntBASIC3.53□□□□□ -1.84
Retrieved 100 of 98,524 protein–RNA pairs in 93.2 ms