Protein–RNA interactions for Protein: O15116

LSM1, U6 snRNA-associated Sm-like protein LSm1, humanhuman

Known RBP Predictions only

Length 133 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1O15116 OTUD4-208ENST00000509620 864 ntTSL 1 (best) BASIC3.14□□□□□ -1.91
LSM1O15116 RNA5SP217-201ENST00000515959 91 ntBASIC3.14□□□□□ -1.91
LSM1O15116 AP001207.2-201ENST00000519490 539 ntBASIC3.14□□□□□ -1.91
LSM1O15116 AC104211.1-202ENST00000521307 866 ntTSL 3 BASIC3.14□□□□□ -1.91
LSM1O15116 NECAB1-205ENST00000522820 811 ntTSL 2 BASIC3.14□□□□□ -1.91
LSM1O15116 PPP1R42-212ENST00000522909 1282 ntAPPRIS ALT2 TSL 5 BASIC3.14□□□□□ -1.91
LSM1O15116 AC063947.1-201ENST00000549036 557 ntTSL 4 BASIC3.14□□□□□ -1.91
LSM1O15116 AC025272.1-201ENST00000569661 483 ntTSL 2 BASIC3.14□□□□□ -1.91
LSM1O15116 AC087463.3-201ENST00000570105 415 ntTSL 3 BASIC3.14□□□□□ -1.91
LSM1O15116 CCDC178-211ENST00000581852 876 ntAPPRIS ALT2 TSL 2 BASIC3.14□□□□□ -1.91
LSM1O15116 SNORD84-203ENST00000584275 78 ntBASIC3.14□□□□□ -1.91
LSM1O15116 SNORD39.3-201ENST00000584451 71 ntBASIC3.14□□□□□ -1.91
LSM1O15116 BDH2P1-201ENST00000602288 736 ntBASIC3.14□□□□□ -1.91
LSM1O15116 ESRRAP2-204ENST00000606337 280 ntTSL 5 BASIC3.14□□□□□ -1.91
LSM1O15116 AC069234.5-201ENST00000611056 416 ntBASIC3.14□□□□□ -1.91
LSM1O15116 AL354696.1-201ENST00000614652 497 ntBASIC3.14□□□□□ -1.91
LSM1O15116 AC018755.4-201ENST00000619715 454 ntBASIC3.14□□□□□ -1.91
LSM1O15116 AL360181.4-201ENST00000621752 134 ntBASIC3.14□□□□□ -1.91
LSM1O15116 AC007218.2-201ENST00000636913 179 ntTSL 5 BASIC3.14□□□□□ -1.91
LSM1O15116 AC090897.3-201ENST00000636973 1157 ntBASIC3.14□□□□□ -1.91
LSM1O15116 PRKG1-205ENST00000401604 5922 ntTSL 5 BASIC3.14□□□□□ -1.91
LSM1O15116 WDR3-201ENST00000349139 9974 ntAPPRIS P1 TSL 1 (best) BASIC3.14□□□□□ -1.91
LSM1O15116 BCLAF1P1-201ENST00000505813 2752 ntBASIC3.14□□□□□ -1.91
LSM1O15116 FAM184A-202ENST00000352896 3700 ntAPPRIS ALT1 TSL 1 (best) BASIC3.14□□□□□ -1.91
LSM1O15116 ZNF807-201ENST00000328088 1707 ntBASIC3.13□□□□□ -1.91
LSM1O15116 SYCP2-201ENST00000357552 5567 ntAPPRIS P2 TSL 1 (best) BASIC3.13□□□□□ -1.91
LSM1O15116 RNU1-85P-201ENST00000364127 164 ntBASIC3.13□□□□□ -1.91
LSM1O15116 OFD1P1Y-201ENST00000411756 1225 ntBASIC3.13□□□□□ -1.91
LSM1O15116 RPS7P15-201ENST00000415804 584 ntBASIC3.13□□□□□ -1.91
LSM1O15116 AC233728.2-201ENST00000425348 757 ntBASIC3.13□□□□□ -1.91
LSM1O15116 UBE2V1P6-201ENST00000430840 422 ntBASIC3.13□□□□□ -1.91
LSM1O15116 AC090617.2-201ENST00000433167 404 ntTSL 3 BASIC3.13□□□□□ -1.91
LSM1O15116 LINC00446-202ENST00000438327 357 ntTSL 3 BASIC3.13□□□□□ -1.91
LSM1O15116 AL390879.2-204ENST00000438602 582 ntTSL 3 BASIC3.13□□□□□ -1.91
LSM1O15116 AC127537.2-201ENST00000439258 465 ntBASIC3.13□□□□□ -1.91
LSM1O15116 AL139383.1-203ENST00000445227 420 ntTSL 3 BASIC3.13□□□□□ -1.91
LSM1O15116 RPL23AP20-201ENST00000447965 421 ntBASIC3.13□□□□□ -1.91
LSM1O15116 TMEM247-203ENST00000449601 741 ntTSL 1 (best) BASIC3.13□□□□□ -1.91
LSM1O15116 RPL26P28-201ENST00000451325 435 ntBASIC3.13□□□□□ -1.91
LSM1O15116 AC007557.1-201ENST00000451711 541 ntTSL 2 BASIC3.13□□□□□ -1.91
LSM1O15116 NAP1L1P3-201ENST00000462291 880 ntBASIC3.13□□□□□ -1.91
LSM1O15116 SAR1B-204ENST00000502539 708 ntTSL 5 BASIC3.13□□□□□ -1.91
LSM1O15116 AC098799.2-201ENST00000509466 868 ntBASIC3.13□□□□□ -1.91
LSM1O15116 LINC01861-201ENST00000509568 537 ntTSL 4 BASIC3.13□□□□□ -1.91
LSM1O15116 LINC02497-201ENST00000515292 507 ntTSL 3 BASIC3.13□□□□□ -1.91
LSM1O15116 LINC00534-201ENST00000517400 793 ntTSL 2 BASIC3.13□□□□□ -1.91
LSM1O15116 TRMT10BP1-201ENST00000519377 943 ntBASIC3.13□□□□□ -1.91
LSM1O15116 OR5B10P-201ENST00000532869 642 ntBASIC3.13□□□□□ -1.91
LSM1O15116 AL049835.1-201ENST00000555850 514 ntTSL 3 BASIC3.13□□□□□ -1.91
LSM1O15116 AC106785.1-201ENST00000565935 262 ntBASIC3.13□□□□□ -1.91
LSM1O15116 AC098850.3-201ENST00000577569 771 ntTSL 3 BASIC3.13□□□□□ -1.91
LSM1O15116 AC011518.1-202ENST00000592668 407 ntTSL 5 BASIC3.13□□□□□ -1.91
LSM1O15116 AC008962.1-201ENST00000605729 304 ntBASIC3.13□□□□□ -1.91
LSM1O15116 AC039056.2-201ENST00000622261 511 ntBASIC3.13□□□□□ -1.91
LSM1O15116 AC104971.4-201ENST00000622763 249 ntTSL 5 BASIC3.13□□□□□ -1.91
LSM1O15116 AC091903.1-201ENST00000624322 454 ntBASIC3.13□□□□□ -1.91
LSM1O15116 AL034408.1-202ENST00000636088 415 ntBASIC3.13□□□□□ -1.91
LSM1O15116 AL161431.1-201ENST00000618966 4205 ntBASIC3.13□□□□□ -1.91
LSM1O15116 RNF17-204ENST00000339524 2203 ntTSL 2 BASIC3.13□□□□□ -1.91
LSM1O15116 KTN1-206ENST00000413890 4473 ntAPPRIS ALT2 TSL 5 BASIC3.13□□□□□ -1.91
LSM1O15116 EVI2A-202ENST00000461237 1540 ntAPPRIS ALT2 TSL 4 BASIC3.13□□□□□ -1.91
LSM1O15116 ZNF849P-201ENST00000594711 1566 ntBASIC3.12□□□□□ -1.91
LSM1O15116 LINC00670-201ENST00000313495 2953 ntTSL 2 BASIC3.12□□□□□ -1.91
LSM1O15116 KNL1-202ENST00000399668 7607 ntAPPRIS ALT2 TSL 1 (best) BASIC3.12□□□□□ -1.91
LSM1O15116 CPD-202ENST00000543464 4007 ntTSL 2 BASIC3.12□□□□□ -1.91
LSM1O15116 ERBIN-204ENST00000380943 6410 ntAPPRIS P3 TSL 1 (best) BASIC3.12□□□□□ -1.91
LSM1O15116 AL050331.3-201ENST00000448740 2081 ntTSL 2 BASIC3.12□□□□□ -1.91
LSM1O15116 AC093010.3-201ENST00000570269 15214 ntBASIC3.12□□□□□ -1.91
LSM1O15116 XKR3-201ENST00000331428 1690 ntAPPRIS P1 TSL 1 (best) BASIC3.12□□□□□ -1.91
LSM1O15116 OR5H2-201ENST00000355273 945 ntBASIC3.12□□□□□ -1.91
LSM1O15116 OR5H2-202ENST00000356526 930 ntAPPRIS P1 BASIC3.12□□□□□ -1.91
LSM1O15116 MIR218-2-201ENST00000385006 110 ntBASIC3.12□□□□□ -1.91
LSM1O15116 RNU6-932P-201ENST00000391108 106 ntBASIC3.12□□□□□ -1.91
LSM1O15116 AL121978.1-201ENST00000402778 359 ntBASIC3.12□□□□□ -1.91
LSM1O15116 AC007899.1-201ENST00000412776 775 ntBASIC3.12□□□□□ -1.91
LSM1O15116 MTCO3P12-201ENST00000416718 547 ntBASIC3.12□□□□□ -1.91
LSM1O15116 AC009276.1-201ENST00000422042 253 ntTSL 5 BASIC3.12□□□□□ -1.91
LSM1O15116 AL133547.1-201ENST00000448546 220 ntBASIC3.12□□□□□ -1.91
LSM1O15116 AL096803.2-201ENST00000450032 677 ntBASIC3.12□□□□□ -1.91
LSM1O15116 AC067945.3-201ENST00000456176 386 ntTSL 5 BASIC3.12□□□□□ -1.91
LSM1O15116 AC012081.1-201ENST00000462382 477 ntTSL 3 BASIC3.12□□□□□ -1.91
LSM1O15116 ST13P14-201ENST00000474095 734 ntBASIC3.12□□□□□ -1.91
LSM1O15116 RPL7P38-201ENST00000488396 739 ntBASIC3.12□□□□□ -1.91
LSM1O15116 AC131211.1-201ENST00000497285 483 ntTSL 5 BASIC3.12□□□□□ -1.91
LSM1O15116 AC093297.2-207ENST00000505401 692 ntTSL 3 BASIC3.12□□□□□ -1.91
LSM1O15116 AC093534.2-201ENST00000511418 420 ntTSL 3 BASIC3.12□□□□□ -1.91
LSM1O15116 AC026403.1-201ENST00000518938 295 ntBASIC3.12□□□□□ -1.91
LSM1O15116 PKIA-AS1-203ENST00000522807 692 ntTSL 3 BASIC3.12□□□□□ -1.91
LSM1O15116 VNN2-207ENST00000525289 900 ntTSL 1 (best) BASIC3.12□□□□□ -1.91
LSM1O15116 AC079917.1-201ENST00000527828 584 ntTSL 3 BASIC3.12□□□□□ -1.91
LSM1O15116 TSPAN19-204ENST00000532498 998 ntAPPRIS P1 TSL 5 BASIC3.12□□□□□ -1.91
LSM1O15116 AC079917.1-202ENST00000534059 625 ntTSL 3 BASIC3.12□□□□□ -1.91
LSM1O15116 OSBPL9P3-201ENST00000534523 595 ntBASIC3.12□□□□□ -1.91
LSM1O15116 LINC02258-201ENST00000551280 777 ntTSL 2 BASIC3.12□□□□□ -1.91
LSM1O15116 AC093515.1-201ENST00000567103 445 ntTSL 5 BASIC3.12□□□□□ -1.91
LSM1O15116 MTCO1P40-201ENST00000574371 625 ntBASIC3.12□□□□□ -1.91
LSM1O15116 MTCO3P13-201ENST00000577757 781 ntBASIC3.12□□□□□ -1.91
LSM1O15116 AC009704.1-201ENST00000583702 331 ntTSL 5 BASIC3.12□□□□□ -1.91
LSM1O15116 MIR3922-201ENST00000585192 84 ntBASIC3.12□□□□□ -1.91
LSM1O15116 AL020997.2-201ENST00000602607 184 ntBASIC3.12□□□□□ -1.91
Retrieved 100 of 98,524 protein–RNA pairs in 155.2 ms