Protein–RNA interactions for Protein: Q9H0D2

ZNF541, Zinc finger protein 541, humanhuman

Predictions only

Length 1,346 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF541Q9H0D2 AC024132.3-201ENST00000513616 649 ntTSL 5 BASIC4.11□□□□□ -1.75
ZNF541Q9H0D2 RNU6-579P-201ENST00000516879 102 ntBASIC4.11□□□□□ -1.75
ZNF541Q9H0D2 ZFAND1-217ENST00000521895 885 ntTSL 3 BASIC4.11□□□□□ -1.75
ZNF541Q9H0D2 MTND2P26-201ENST00000528255 1029 ntBASIC4.11□□□□□ -1.75
ZNF541Q9H0D2 CLEC7A-212ENST00000533022 625 ntTSL 1 (best) BASIC4.11□□□□□ -1.75
ZNF541Q9H0D2 MTCYBP27-201ENST00000555160 670 ntBASIC4.11□□□□□ -1.75
ZNF541Q9H0D2 AC012404.1-201ENST00000560876 476 ntTSL 3 BASIC4.11□□□□□ -1.75
ZNF541Q9H0D2 AADACP1-206ENST00000561502 1193 ntBASIC4.11□□□□□ -1.75
ZNF541Q9H0D2 AC002546.2-201ENST00000585537 584 ntTSL 3 BASIC4.11□□□□□ -1.75
ZNF541Q9H0D2 AC067852.4-201ENST00000590314 478 ntBASIC4.11□□□□□ -1.75
ZNF541Q9H0D2 AC113194.1-201ENST00000606037 500 ntBASIC4.11□□□□□ -1.75
ZNF541Q9H0D2 AC097478.4-201ENST00000615968 522 ntTSL 5 BASIC4.11□□□□□ -1.75
ZNF541Q9H0D2 AC098679.5-201ENST00000624394 571 ntBASIC4.11□□□□□ -1.75
ZNF541Q9H0D2 UBA5-201ENST00000264991 2850 ntTSL 5 BASIC4.11□□□□□ -1.75
ZNF541Q9H0D2 CDH8-205ENST00000577730 8009 ntTSL 5 BASIC4.1□□□□□ -1.75
ZNF541Q9H0D2 EMCN-209ENST00000511970 1377 ntAPPRIS ALT2 TSL 2 BASIC4.1□□□□□ -1.75
ZNF541Q9H0D2 PRKACB-219ENST00000614872 4306 ntTSL 1 (best) BASIC4.1□□□□□ -1.75
ZNF541Q9H0D2 CCNH-206ENST00000508855 2391 ntTSL 1 (best) BASIC4.1□□□□□ -1.75
ZNF541Q9H0D2 GABRG2-213ENST00000639046 3058 ntTSL 5 BASIC4.1□□□□□ -1.75
ZNF541Q9H0D2 IDE-202ENST00000371581 4480 ntTSL 2 BASIC4.1□□□□□ -1.75
ZNF541Q9H0D2 BCLAF1-214ENST00000531224 7263 ntAPPRIS P3 TSL 1 (best) BASIC4.1□□□□□ -1.75
ZNF541Q9H0D2 SLC39A10-201ENST00000359634 5322 ntAPPRIS P1 TSL 1 (best) BASIC4.1□□□□□ -1.75
ZNF541Q9H0D2 LINC01094-203ENST00000504675 1985 ntTSL 2 BASIC4.1□□□□□ -1.75
ZNF541Q9H0D2 SLC38A2-209ENST00000551374 2802 ntTSL 2 BASIC4.1□□□□□ -1.75
ZNF541Q9H0D2 MT-ND2-201ENST00000361453 1042 ntAPPRIS P1 BASIC4.1□□□□□ -1.75
ZNF541Q9H0D2 RNA5SP432-201ENST00000362480 116 ntBASIC4.1□□□□□ -1.75
ZNF541Q9H0D2 CRP-203ENST00000368111 512 ntTSL 3 BASIC4.1□□□□□ -1.75
ZNF541Q9H0D2 SNORA48.8-201ENST00000391324 134 ntBASIC4.1□□□□□ -1.75
ZNF541Q9H0D2 RNU4-47P-201ENST00000410876 114 ntBASIC4.1□□□□□ -1.75
ZNF541Q9H0D2 AC005104.1-201ENST00000414896 442 ntTSL 3 BASIC4.1□□□□□ -1.75
ZNF541Q9H0D2 AL356320.2-201ENST00000417263 507 ntBASIC4.1□□□□□ -1.75
ZNF541Q9H0D2 IFNNP1-201ENST00000429219 553 ntBASIC4.1□□□□□ -1.75
ZNF541Q9H0D2 RPL23AP69-201ENST00000431134 458 ntBASIC4.1□□□□□ -1.75
ZNF541Q9H0D2 SPINK8-201ENST00000434006 444 ntAPPRIS P1 TSL 3 BASIC4.1□□□□□ -1.75
ZNF541Q9H0D2 B3GNT2P1-201ENST00000434960 952 ntBASIC4.1□□□□□ -1.75
ZNF541Q9H0D2 LINC01680-201ENST00000434983 299 ntTSL 2 BASIC4.1□□□□□ -1.75
ZNF541Q9H0D2 AC022537.1-201ENST00000435271 446 ntTSL 3 BASIC4.1□□□□□ -1.75
ZNF541Q9H0D2 CR769776.1-201ENST00000441254 787 ntBASIC4.1□□□□□ -1.75
ZNF541Q9H0D2 LINC00456-201ENST00000453862 692 ntTSL 3 BASIC4.1□□□□□ -1.75
ZNF541Q9H0D2 RPL21P71-201ENST00000465598 459 ntBASIC4.1□□□□□ -1.75
ZNF541Q9H0D2 CCDC39-AS1-201ENST00000495357 283 ntTSL 3 BASIC4.1□□□□□ -1.75
ZNF541Q9H0D2 PDLIM1P4-201ENST00000504327 1006 ntBASIC4.1□□□□□ -1.75
ZNF541Q9H0D2 LINC02118-201ENST00000505899 407 ntTSL 3 BASIC4.1□□□□□ -1.75
ZNF541Q9H0D2 LINC02112-202ENST00000512976 464 ntTSL 3 BASIC4.1□□□□□ -1.75
ZNF541Q9H0D2 AC027701.1-202ENST00000520988 459 ntTSL 3 BASIC4.1□□□□□ -1.75
ZNF541Q9H0D2 NRG1-IT1-202ENST00000521463 742 ntTSL 1 (best) BASIC4.1□□□□□ -1.75
ZNF541Q9H0D2 LINC02442-202ENST00000540761 382 ntTSL 2 BASIC4.1□□□□□ -1.75
ZNF541Q9H0D2 AP001269.3-201ENST00000588718 329 ntBASIC4.1□□□□□ -1.75
ZNF541Q9H0D2 LINC00907-208ENST00000593051 1092 ntTSL 1 (best) BASIC4.1□□□□□ -1.75
ZNF541Q9H0D2 MTND3P19-201ENST00000603825 345 ntBASIC4.1□□□□□ -1.75
ZNF541Q9H0D2 AC069545.1-201ENST00000605671 358 ntBASIC4.1□□□□□ -1.75
ZNF541Q9H0D2 AC093732.2-201ENST00000607950 274 ntBASIC4.1□□□□□ -1.75
ZNF541Q9H0D2 ADARB1-213ENST00000611195 159 ntTSL 5 BASIC4.1□□□□□ -1.75
ZNF541Q9H0D2 AP002782.1-201ENST00000623107 614 ntBASIC4.1□□□□□ -1.75
ZNF541Q9H0D2 AC091905.1-201ENST00000624400 311 ntBASIC4.1□□□□□ -1.75
ZNF541Q9H0D2 MIR4496-201ENST00000635896 61 ntBASIC4.1□□□□□ -1.75
ZNF541Q9H0D2 CKAP5-201ENST00000312055 6532 ntTSL 5 BASIC4.1□□□□□ -1.75
ZNF541Q9H0D2 IQGAP2-202ENST00000379730 5442 ntTSL 5 BASIC4.1□□□□□ -1.75
ZNF541Q9H0D2 OR9H1P-201ENST00000446393 4888 ntAPPRIS P1 BASIC4.1□□□□□ -1.75
ZNF541Q9H0D2 PHF6-201ENST00000332070 4759 ntAPPRIS P2 TSL 1 (best) BASIC4.1□□□□□ -1.75
ZNF541Q9H0D2 CCDC121-201ENST00000324364 2342 ntAPPRIS P3 TSL 1 (best) BASIC4.09□□□□□ -1.75
ZNF541Q9H0D2 PLEKHG7-203ENST00000638590 3267 ntAPPRIS P1 TSL 2 BASIC4.09□□□□□ -1.75
ZNF541Q9H0D2 AC018555.1-201ENST00000567548 1980 ntBASIC4.09□□□□□ -1.75
ZNF541Q9H0D2 PPIP5K2-217ENST00000627916 6010 ntAPPRIS ALT2 TSL 5 BASIC4.09□□□□□ -1.75
ZNF541Q9H0D2 PRLR-217ENST00000618457 11688 ntAPPRIS P1 TSL 1 (best) BASIC4.09□□□□□ -1.75
ZNF541Q9H0D2 OR5H2-201ENST00000355273 945 ntBASIC4.09□□□□□ -1.75
ZNF541Q9H0D2 OR5H2-202ENST00000356526 930 ntAPPRIS P1 BASIC4.09□□□□□ -1.75
ZNF541Q9H0D2 F8-202ENST00000360256 9059 ntAPPRIS P1 TSL 1 (best) BASIC4.09□□□□□ -1.75
ZNF541Q9H0D2 RNU6-1243P-201ENST00000364028 107 ntBASIC4.09□□□□□ -1.75
ZNF541Q9H0D2 Y_RNA.465-201ENST00000384293 102 ntBASIC4.09□□□□□ -1.75
ZNF541Q9H0D2 SSXP10-201ENST00000402595 565 ntBASIC4.09□□□□□ -1.75
ZNF541Q9H0D2 U3.39-201ENST00000408569 239 ntBASIC4.09□□□□□ -1.75
ZNF541Q9H0D2 UBE2Q2P5Y-201ENST00000413867 207 ntBASIC4.09□□□□□ -1.75
ZNF541Q9H0D2 FCF1P2-201ENST00000415284 583 ntBASIC4.09□□□□□ -1.75
ZNF541Q9H0D2 AL590730.1-201ENST00000426283 398 ntTSL 3 BASIC4.09□□□□□ -1.75
ZNF541Q9H0D2 BLOC1S2P1-201ENST00000428431 301 ntBASIC4.09□□□□□ -1.75
ZNF541Q9H0D2 OR51AB1P-201ENST00000429046 620 ntBASIC4.09□□□□□ -1.75
ZNF541Q9H0D2 UBE2Q2P4Y-201ENST00000433767 207 ntBASIC4.09□□□□□ -1.75
ZNF541Q9H0D2 AC241584.1-201ENST00000438469 1241 ntBASIC4.09□□□□□ -1.75
ZNF541Q9H0D2 AL591719.1-201ENST00000444669 744 ntBASIC4.09□□□□□ -1.75
ZNF541Q9H0D2 AC002383.1-201ENST00000448260 671 ntTSL 5 BASIC4.09□□□□□ -1.75
ZNF541Q9H0D2 PLCB1-IT1-202ENST00000451443 251 ntTSL 3 BASIC4.09□□□□□ -1.75
ZNF541Q9H0D2 FAIM-205ENST00000464668 641 ntAPPRIS P3 TSL 5 BASIC4.09□□□□□ -1.75
ZNF541Q9H0D2 RN7SL594P-201ENST00000470590 287 ntBASIC4.09□□□□□ -1.75
ZNF541Q9H0D2 AC023598.1-201ENST00000472521 361 ntBASIC4.09□□□□□ -1.75
ZNF541Q9H0D2 AC109925.1-201ENST00000478069 331 ntBASIC4.09□□□□□ -1.75
ZNF541Q9H0D2 AC013828.1-201ENST00000481845 158 ntBASIC4.09□□□□□ -1.75
ZNF541Q9H0D2 PRELID3BP7-201ENST00000503606 469 ntBASIC4.09□□□□□ -1.75
ZNF541Q9H0D2 AC008948.1-201ENST00000506058 325 ntTSL 2 BASIC4.09□□□□□ -1.75
ZNF541Q9H0D2 AC079160.1-202ENST00000508406 2795 ntTSL 5 BASIC4.09□□□□□ -1.75
ZNF541Q9H0D2 MTCO1P30-201ENST00000515244 580 ntBASIC4.09□□□□□ -1.75
ZNF541Q9H0D2 RN7SKP265-201ENST00000516448 223 ntBASIC4.09□□□□□ -1.75
ZNF541Q9H0D2 RN7SKP277-201ENST00000516895 283 ntBASIC4.09□□□□□ -1.75
ZNF541Q9H0D2 AC118942.1-202ENST00000529081 578 ntTSL 5 BASIC4.09□□□□□ -1.75
ZNF541Q9H0D2 LINC01899-201ENST00000580323 312 ntTSL 5 BASIC4.09□□□□□ -1.75
ZNF541Q9H0D2 BNIP3P26-201ENST00000600827 554 ntBASIC4.09□□□□□ -1.75
ZNF541Q9H0D2 IL33-205ENST00000611532 757 ntTSL 1 (best) BASIC4.09□□□□□ -1.75
ZNF541Q9H0D2 AC005332.6-201ENST00000613178 446 ntBASIC4.09□□□□□ -1.75
ZNF541Q9H0D2 RMST_9.1-201ENST00000619945 193 ntBASIC4.09□□□□□ -1.75
ZNF541Q9H0D2 AC067852.7-201ENST00000623270 535 ntBASIC4.09□□□□□ -1.75
Retrieved 100 of 98,524 protein–RNA pairs in 92.8 ms