Protein–RNA interactions for Protein: Q96QK1

VPS35, Vacuolar protein sorting-associated protein 35, humanhuman

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35Q96QK1 RNF17-201ENST00000255324 5119 ntAPPRIS P1 TSL 2 BASIC3.4□□□□□ -1.87
VPS35Q96QK1 SNORD82-201ENST00000365530 70 ntBASIC3.4□□□□□ -1.87
VPS35Q96QK1 RNU6-1181P-201ENST00000384191 106 ntBASIC3.4□□□□□ -1.87
VPS35Q96QK1 MIR7-3-201ENST00000384898 110 ntBASIC3.4□□□□□ -1.87
VPS35Q96QK1 RNU6-821P-201ENST00000390995 107 ntBASIC3.4□□□□□ -1.87
VPS35Q96QK1 MS4A4E-202ENST00000398986 522 ntAPPRIS P1 TSL 5 BASIC3.4□□□□□ -1.87
VPS35Q96QK1 KRR1P1-201ENST00000419430 803 ntBASIC3.4□□□□□ -1.87
VPS35Q96QK1 AP000907.1-201ENST00000428428 510 ntBASIC3.4□□□□□ -1.87
VPS35Q96QK1 AC116035.1-201ENST00000431057 517 ntTSL 3 BASIC3.4□□□□□ -1.87
VPS35Q96QK1 AC026167.1-201ENST00000435651 299 ntTSL 3 BASIC3.4□□□□□ -1.87
VPS35Q96QK1 AC018359.1-201ENST00000442567 574 ntTSL 4 BASIC3.4□□□□□ -1.87
VPS35Q96QK1 IGKV3D-7-201ENST00000443397 384 ntAPPRIS P1 BASIC3.4□□□□□ -1.87
VPS35Q96QK1 AC002383.1-201ENST00000448260 671 ntTSL 5 BASIC3.4□□□□□ -1.87
VPS35Q96QK1 NPM1P13-201ENST00000452663 865 ntBASIC3.4□□□□□ -1.87
VPS35Q96QK1 RPS24P6-201ENST00000452670 400 ntBASIC3.4□□□□□ -1.87
VPS35Q96QK1 VPS26AP1-201ENST00000483197 979 ntBASIC3.4□□□□□ -1.87
VPS35Q96QK1 AC108078.3-201ENST00000502633 489 ntBASIC3.4□□□□□ -1.87
VPS35Q96QK1 LINC00492-201ENST00000504436 593 ntTSL 3 BASIC3.4□□□□□ -1.87
VPS35Q96QK1 INPP4B-206ENST00000506217 673 ntTSL 1 (best) BASIC3.4□□□□□ -1.87
VPS35Q96QK1 HMGB3P15-201ENST00000507326 574 ntBASIC3.4□□□□□ -1.87
VPS35Q96QK1 LINC02315-201ENST00000515218 696 ntTSL 5 BASIC3.4□□□□□ -1.87
VPS35Q96QK1 LINC02374-202ENST00000515222 578 ntTSL 4 BASIC3.4□□□□□ -1.87
VPS35Q96QK1 RN7SKP289-201ENST00000517244 295 ntBASIC3.4□□□□□ -1.87
VPS35Q96QK1 IGKV2-26-201ENST00000518305 343 ntBASIC3.4□□□□□ -1.87
VPS35Q96QK1 AP005357.1-201ENST00000520749 476 ntTSL 3 BASIC3.4□□□□□ -1.87
VPS35Q96QK1 POSTN-209ENST00000541179 3214 ntAPPRIS ALT2 TSL 1 (best) BASIC3.4□□□□□ -1.87
VPS35Q96QK1 JCHAIN-206ENST00000543780 1406 ntAPPRIS P1 TSL 1 (best) BASIC3.4□□□□□ -1.87
VPS35Q96QK1 LINC01965-204ENST00000545549 575 ntTSL 4 BASIC3.4□□□□□ -1.87
VPS35Q96QK1 AC004217.2-201ENST00000547401 751 ntTSL 3 BASIC3.4□□□□□ -1.87
VPS35Q96QK1 AC087897.1-201ENST00000550134 156 ntBASIC3.4□□□□□ -1.87
VPS35Q96QK1 TRAV37-201ENST00000553906 342 ntBASIC3.4□□□□□ -1.87
VPS35Q96QK1 AL352979.2-201ENST00000556988 366 ntTSL 3 BASIC3.4□□□□□ -1.87
VPS35Q96QK1 MIR5186-201ENST00000577504 120 ntBASIC3.4□□□□□ -1.87
VPS35Q96QK1 AC006329.2-201ENST00000611491 394 ntBASIC3.4□□□□□ -1.87
VPS35Q96QK1 AC110801.1-201ENST00000623590 212 ntBASIC3.4□□□□□ -1.87
VPS35Q96QK1 AC026634.1-201ENST00000634369 198 ntBASIC3.4□□□□□ -1.87
VPS35Q96QK1 U6.105-201ENST00000637379 88 ntBASIC3.4□□□□□ -1.87
VPS35Q96QK1 SYT14-204ENST00000472886 2966 ntAPPRIS P3 TSL 1 (best) BASIC3.4□□□□□ -1.87
VPS35Q96QK1 SLC39A10-202ENST00000409086 5432 ntAPPRIS P1 TSL 1 (best) BASIC3.4□□□□□ -1.87
VPS35Q96QK1 MBNL1-223ENST00000498502 5258 ntTSL 5 BASIC3.4□□□□□ -1.87
VPS35Q96QK1 UEVLD-208ENST00000535484 1963 ntTSL 2 BASIC3.4□□□□□ -1.87
VPS35Q96QK1 GABRG2-208ENST00000638552 3710 ntTSL 5 BASIC3.4□□□□□ -1.87
VPS35Q96QK1 SUGT1-201ENST00000310528 14131 ntAPPRIS P3 TSL 1 (best) BASIC3.39□□□□□ -1.87
VPS35Q96QK1 PPIG-207ENST00000448752 2498 ntAPPRIS P1 TSL 1 (best) BASIC3.39□□□□□ -1.87
VPS35Q96QK1 TAS2R14-202ENST00000537503 1858 ntAPPRIS P1 BASIC3.39□□□□□ -1.87
VPS35Q96QK1 MYOT-208ENST00000515645 1578 ntTSL 2 BASIC3.39□□□□□ -1.87
VPS35Q96QK1 RNU1-33P-201ENST00000364249 162 ntBASIC3.39□□□□□ -1.87
VPS35Q96QK1 C1orf105-203ENST00000367727 985 ntAPPRIS P1 TSL 1 (best) BASIC3.39□□□□□ -1.87
VPS35Q96QK1 MIR591-201ENST00000385290 95 ntBASIC3.39□□□□□ -1.87
VPS35Q96QK1 RNA5SP171-201ENST00000391071 115 ntBASIC3.39□□□□□ -1.87
VPS35Q96QK1 SNORA48.8-201ENST00000391324 134 ntBASIC3.39□□□□□ -1.87
VPS35Q96QK1 AL024474.1-201ENST00000404655 591 ntBASIC3.39□□□□□ -1.87
VPS35Q96QK1 RPS7P9-201ENST00000414704 586 ntBASIC3.39□□□□□ -1.87
VPS35Q96QK1 AL033504.1-201ENST00000427015 773 ntTSL 2 BASIC3.39□□□□□ -1.87
VPS35Q96QK1 AL158071.1-201ENST00000430315 461 ntBASIC3.39□□□□□ -1.87
VPS35Q96QK1 AC005019.1-201ENST00000436455 431 ntBASIC3.39□□□□□ -1.87
VPS35Q96QK1 AC011891.1-201ENST00000437088 432 ntTSL 3 BASIC3.39□□□□□ -1.87
VPS35Q96QK1 AC092393.1-201ENST00000439625 742 ntBASIC3.39□□□□□ -1.87
VPS35Q96QK1 AL662791.1-201ENST00000441992 928 ntBASIC3.39□□□□□ -1.87
VPS35Q96QK1 AC044781.1-201ENST00000446193 570 ntTSL 3 BASIC3.39□□□□□ -1.87
VPS35Q96QK1 SPANXN4-202ENST00000446864 431 ntAPPRIS P2 TSL 1 (best) BASIC3.39□□□□□ -1.87
VPS35Q96QK1 MTCO1P48-201ENST00000448024 1096 ntBASIC3.39□□□□□ -1.87
VPS35Q96QK1 AL358232.1-201ENST00000448030 501 ntBASIC3.39□□□□□ -1.87
VPS35Q96QK1 MRPS31P2-201ENST00000451581 518 ntBASIC3.39□□□□□ -1.87
VPS35Q96QK1 AL080313.2-201ENST00000456440 489 ntTSL 3 BASIC3.39□□□□□ -1.87
VPS35Q96QK1 RPS4XP2-201ENST00000458402 793 ntBASIC3.39□□□□□ -1.87
VPS35Q96QK1 RPS27P29-201ENST00000463110 252 ntBASIC3.39□□□□□ -1.87
VPS35Q96QK1 RPL23AP67-201ENST00000465341 474 ntBASIC3.39□□□□□ -1.87
VPS35Q96QK1 AC107021.1-202ENST00000480247 555 ntTSL 5 BASIC3.39□□□□□ -1.87
VPS35Q96QK1 RPS4XP13-201ENST00000483219 789 ntBASIC3.39□□□□□ -1.87
VPS35Q96QK1 FCF1P3-201ENST00000496394 590 ntBASIC3.39□□□□□ -1.87
VPS35Q96QK1 LNX1-AS2-201ENST00000502410 347 ntTSL 5 BASIC3.39□□□□□ -1.87
VPS35Q96QK1 AC093767.1-201ENST00000504523 156 ntBASIC3.39□□□□□ -1.87
VPS35Q96QK1 MND1-203ENST00000504860 638 ntTSL 1 (best) BASIC3.39□□□□□ -1.87
VPS35Q96QK1 BOLA3P3-201ENST00000505182 232 ntBASIC3.39□□□□□ -1.87
VPS35Q96QK1 AC104619.2-201ENST00000514293 646 ntTSL 3 BASIC3.39□□□□□ -1.87
VPS35Q96QK1 SNORA48.10-201ENST00000516965 160 ntBASIC3.39□□□□□ -1.87
VPS35Q96QK1 SKP1-210ENST00000522855 802 ntAPPRIS P4 TSL 2 BASIC3.39□□□□□ -1.87
VPS35Q96QK1 MTCO3P15-201ENST00000526563 574 ntBASIC3.39□□□□□ -1.87
VPS35Q96QK1 PWRN1-202ENST00000562501 642 ntTSL 3 BASIC3.39□□□□□ -1.87
VPS35Q96QK1 AC067852.3-201ENST00000589177 561 ntBASIC3.39□□□□□ -1.87
VPS35Q96QK1 AC124312.4-201ENST00000605533 310 ntBASIC3.39□□□□□ -1.87
VPS35Q96QK1 AL392048.1-201ENST00000613946 534 ntBASIC3.39□□□□□ -1.87
VPS35Q96QK1 AL138955.1-201ENST00000622881 1040 ntBASIC3.39□□□□□ -1.87
VPS35Q96QK1 AC109454.4-201ENST00000623411 649 ntBASIC3.39□□□□□ -1.87
VPS35Q96QK1 AC080188.3-201ENST00000624842 748 ntBASIC3.39□□□□□ -1.87
VPS35Q96QK1 AC126544.2-201ENST00000625174 749 ntBASIC3.39□□□□□ -1.87
VPS35Q96QK1 AC087821.2-201ENST00000637086 450 ntBASIC3.39□□□□□ -1.87
VPS35Q96QK1 AC134980.1-208ENST00000640228 535 ntTSL 5 BASIC3.39□□□□□ -1.87
VPS35Q96QK1 AC058791.1-201ENST00000608412 3198 ntBASIC3.39□□□□□ -1.87
VPS35Q96QK1 DCUN1D1-201ENST00000292782 7954 ntAPPRIS P1 TSL 1 (best) BASIC3.39□□□□□ -1.87
VPS35Q96QK1 USP15-203ENST00000353364 14950 ntAPPRIS P3 TSL 1 (best) BASIC3.38□□□□□ -1.87
VPS35Q96QK1 AL672296.1-201ENST00000427780 2158 ntBASIC3.38□□□□□ -1.87
VPS35Q96QK1 OSBPL9P4-201ENST00000371707 1800 ntBASIC3.38□□□□□ -1.87
VPS35Q96QK1 AL513302.2-201ENST00000562313 1842 ntBASIC3.38□□□□□ -1.87
VPS35Q96QK1 DTHD1-205ENST00000507598 2606 ntTSL 1 (best) BASIC3.38□□□□□ -1.87
VPS35Q96QK1 RNU6-1249P-201ENST00000363237 111 ntBASIC3.38□□□□□ -1.87
VPS35Q96QK1 SNORA51.6-201ENST00000384151 125 ntBASIC3.38□□□□□ -1.87
VPS35Q96QK1 MIR490-201ENST00000384865 128 ntBASIC3.38□□□□□ -1.87
VPS35Q96QK1 TRAV24-201ENST00000390453 343 ntAPPRIS P1 BASIC3.38□□□□□ -1.87
Retrieved 100 of 98,524 protein–RNA pairs in 110.7 ms