Protein–RNA interactions for Protein: Q86TS7

LINC00643, Putative UPF0730 protein encoded by LINC00643, humanhuman

Predictions only

Length 51 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643Q86TS7 RPL5P13-201ENST00000462840 709 ntBASIC1.48□□□□□ -2.17
LINC00643Q86TS7 AC015908.1-201ENST00000478739 476 ntBASIC1.48□□□□□ -2.17
LINC00643Q86TS7 AC004263.1-201ENST00000479327 332 ntBASIC1.48□□□□□ -2.17
LINC00643Q86TS7 FSBP-201ENST00000481490 1158 ntTSL 1 (best) BASIC1.48□□□□□ -2.17
LINC00643Q86TS7 RPL30P14-201ENST00000482744 348 ntBASIC1.48□□□□□ -2.17
LINC00643Q86TS7 AC132825.2-201ENST00000483901 504 ntTSL 5 BASIC1.48□□□□□ -2.17
LINC00643Q86TS7 AC004815.1-201ENST00000484185 331 ntBASIC1.48□□□□□ -2.17
LINC00643Q86TS7 ARNTL2-AS1-201ENST00000500498 804 ntTSL 1 (best) BASIC1.48□□□□□ -2.17
LINC00643Q86TS7 AC113383.1-204ENST00000507060 552 ntTSL 3 BASIC1.48□□□□□ -2.17
LINC00643Q86TS7 NDUFB5P1-201ENST00000508134 564 ntBASIC1.48□□□□□ -2.17
LINC00643Q86TS7 AC126768.3-201ENST00000514519 560 ntTSL 4 BASIC1.48□□□□□ -2.17
LINC00643Q86TS7 RNU2-44P-201ENST00000516795 194 ntBASIC1.48□□□□□ -2.17
LINC00643Q86TS7 AP003123.1-201ENST00000526041 333 ntTSL 2 BASIC1.48□□□□□ -2.17
LINC00643Q86TS7 C11orf1-204ENST00000530214 599 ntTSL 5 BASIC1.48□□□□□ -2.17
LINC00643Q86TS7 AP006295.1-201ENST00000532605 585 ntTSL 5 BASIC1.48□□□□□ -2.17
LINC00643Q86TS7 AC008115.2-201ENST00000539988 241 ntTSL 3 BASIC1.48□□□□□ -2.17
LINC00643Q86TS7 SPIC-201ENST00000551346 1132 ntAPPRIS P1 TSL 1 (best) BASIC1.48□□□□□ -2.17
LINC00643Q86TS7 LINC02386-203ENST00000552182 501 ntTSL 3 BASIC1.48□□□□□ -2.17
LINC00643Q86TS7 AL139022.1-201ENST00000556127 486 ntTSL 5 BASIC1.48□□□□□ -2.17
LINC00643Q86TS7 AC025272.1-201ENST00000569661 483 ntTSL 2 BASIC1.48□□□□□ -2.17
LINC00643Q86TS7 AC012182.1-201ENST00000570133 895 ntBASIC1.48□□□□□ -2.17
LINC00643Q86TS7 OR1M4P-201ENST00000589199 287 ntBASIC1.48□□□□□ -2.17
LINC00643Q86TS7 CKS1BP3-201ENST00000600888 237 ntBASIC1.48□□□□□ -2.17
LINC00643Q86TS7 AC013562.2-201ENST00000611632 603 ntBASIC1.48□□□□□ -2.17
LINC00643Q86TS7 MIR6076-201ENST00000617521 113 ntBASIC1.48□□□□□ -2.17
LINC00643Q86TS7 ATP13A5-205ENST00000620313 709 ntTSL 5 BASIC1.48□□□□□ -2.17
LINC00643Q86TS7 AL162373.1-201ENST00000620433 407 ntBASIC1.48□□□□□ -2.17
LINC00643Q86TS7 AL445528.2-201ENST00000620582 470 ntBASIC1.48□□□□□ -2.17
LINC00643Q86TS7 ANKAR-201ENST00000313581 4391 ntAPPRIS P1 TSL 1 (best) BASIC1.47□□□□□ -2.17
LINC00643Q86TS7 ANP32E-209ENST00000616917 2989 ntTSL 2 BASIC1.47□□□□□ -2.17
LINC00643Q86TS7 CEP83-202ENST00000397807 2737 ntTSL 5 BASIC1.47□□□□□ -2.17
LINC00643Q86TS7 SCN7A-201ENST00000409855 7183 ntAPPRIS P1 TSL 1 (best) BASIC1.47□□□□□ -2.17
LINC00643Q86TS7 OSTN-202ENST00000445281 3134 ntTSL 5 BASIC1.47□□□□□ -2.17
LINC00643Q86TS7 ZNF733P-201ENST00000331425 1506 ntTSL 1 (best) BASIC1.47□□□□□ -2.17
LINC00643Q86TS7 SNX16-212ENST00000615066 1918 ntTSL 5 BASIC1.47□□□□□ -2.17
LINC00643Q86TS7 ANKRD36P1-201ENST00000344424 659 ntBASIC1.47□□□□□ -2.17
LINC00643Q86TS7 CXorf65-201ENST00000374251 601 ntAPPRIS P1 TSL 5 BASIC1.47□□□□□ -2.17
LINC00643Q86TS7 OR6C69P-201ENST00000394268 893 ntBASIC1.47□□□□□ -2.17
LINC00643Q86TS7 RPS27L-202ENST00000411926 528 ntTSL 3 BASIC1.47□□□□□ -2.17
LINC00643Q86TS7 NPM1P11-201ENST00000417106 855 ntBASIC1.47□□□□□ -2.17
LINC00643Q86TS7 ZNF90P2-204ENST00000419323 1075 ntBASIC1.47□□□□□ -2.17
LINC00643Q86TS7 DYDC1-203ENST00000421924 708 ntAPPRIS P1 TSL 1 (best) BASIC1.47□□□□□ -2.17
LINC00643Q86TS7 AC245052.1-201ENST00000426213 410 ntTSL 3 BASIC1.47□□□□□ -2.17
LINC00643Q86TS7 AC244033.1-201ENST00000426826 870 ntBASIC1.47□□□□□ -2.17
LINC00643Q86TS7 AL117341.1-201ENST00000437213 373 ntTSL 5 BASIC1.47□□□□□ -2.17
LINC00643Q86TS7 AL137789.1-201ENST00000439443 682 ntTSL 3 BASIC1.47□□□□□ -2.17
LINC00643Q86TS7 AL445687.1-201ENST00000439946 251 ntBASIC1.47□□□□□ -2.17
LINC00643Q86TS7 AL590664.1-201ENST00000448065 339 ntBASIC1.47□□□□□ -2.17
LINC00643Q86TS7 RPL37P4-201ENST00000448908 268 ntBASIC1.47□□□□□ -2.17
LINC00643Q86TS7 AC097493.1-201ENST00000463958 372 ntBASIC1.47□□□□□ -2.17
LINC00643Q86TS7 RN7SL293P-201ENST00000481765 281 ntBASIC1.47□□□□□ -2.17
LINC00643Q86TS7 LINC02198-201ENST00000504280 810 ntTSL 3 BASIC1.47□□□□□ -2.17
LINC00643Q86TS7 AC034159.1-201ENST00000513885 583 ntBASIC1.47□□□□□ -2.17
LINC00643Q86TS7 AC091435.2-201ENST00000514586 565 ntTSL 4 BASIC1.47□□□□□ -2.17
LINC00643Q86TS7 LINC02378-201ENST00000540399 1003 ntTSL 5 BASIC1.47□□□□□ -2.17
LINC00643Q86TS7 TRAV28-201ENST00000557548 323 ntBASIC1.47□□□□□ -2.17
LINC00643Q86TS7 LINC01491-202ENST00000558792 439 ntTSL 3 BASIC1.47□□□□□ -2.17
LINC00643Q86TS7 AC107982.3-201ENST00000584957 985 ntBASIC1.47□□□□□ -2.17
LINC00643Q86TS7 AC005537.1-201ENST00000588324 1238 ntTSL 1 (best) BASIC1.47□□□□□ -2.17
LINC00643Q86TS7 NRBF2P5-201ENST00000603087 788 ntBASIC1.47□□□□□ -2.17
LINC00643Q86TS7 AL139041.1-201ENST00000605480 610 ntBASIC1.47□□□□□ -2.17
LINC00643Q86TS7 AC084757.4-201ENST00000616350 526 ntBASIC1.47□□□□□ -2.17
LINC00643Q86TS7 U4.3-201ENST00000621047 82 ntBASIC1.47□□□□□ -2.17
LINC00643Q86TS7 ZBBX-205ENST00000455345 3185 ntAPPRIS ALT2 TSL 1 (best) BASIC1.47□□□□□ -2.17
LINC00643Q86TS7 ZFAND6-212ENST00000559775 1602 ntAPPRIS P1 TSL 2 BASIC1.47□□□□□ -2.17
LINC00643Q86TS7 PTPRQ-208ENST00000614701 8289 ntAPPRIS P1 TSL 5 BASIC1.47□□□□□ -2.17
LINC00643Q86TS7 MCF2-208ENST00000519895 3346 ntAPPRIS ALT2 TSL 2 BASIC1.46□□□□□ -2.17
LINC00643Q86TS7 AC022336.2-201ENST00000568966 2538 ntBASIC1.46□□□□□ -2.18
LINC00643Q86TS7 OR6C2-202ENST00000641202 2105 ntAPPRIS P1 BASIC1.46□□□□□ -2.18
LINC00643Q86TS7 PKIB-202ENST00000354275 1043 ntAPPRIS P1 TSL 1 (best) BASIC1.46□□□□□ -2.18
LINC00643Q86TS7 RNA5SP124-201ENST00000362739 110 ntBASIC1.46□□□□□ -2.18
LINC00643Q86TS7 SNORA16B-201ENST00000364674 135 ntBASIC1.46□□□□□ -2.18
LINC00643Q86TS7 LINC00587-201ENST00000374801 590 ntTSL 1 (best) BASIC1.46□□□□□ -2.18
LINC00643Q86TS7 MIR17-201ENST00000385012 84 ntBASIC1.46□□□□□ -2.18
LINC00643Q86TS7 SUMO2P12-201ENST00000405924 140 ntBASIC1.46□□□□□ -2.18
LINC00643Q86TS7 SNORD23.1-201ENST00000408212 104 ntBASIC1.46□□□□□ -2.18
LINC00643Q86TS7 AC012370.1-201ENST00000419244 530 ntTSL 3 BASIC1.46□□□□□ -2.18
LINC00643Q86TS7 NBDY-202ENST00000423617 543 ntAPPRIS P1 TSL 2 BASIC1.46□□□□□ -2.18
LINC00643Q86TS7 AL133268.4-201ENST00000424868 472 ntTSL 3 BASIC1.46□□□□□ -2.18
LINC00643Q86TS7 AL360081.1-201ENST00000428299 555 ntBASIC1.46□□□□□ -2.18
LINC00643Q86TS7 ZFY-AS1-202ENST00000431145 419 ntTSL 3 BASIC1.46□□□□□ -2.18
LINC00643Q86TS7 OR4K11P-201ENST00000431829 904 ntBASIC1.46□□□□□ -2.18
LINC00643Q86TS7 OR6C71P-201ENST00000432580 913 ntBASIC1.46□□□□□ -2.18
LINC00643Q86TS7 C21orf91-OT1-203ENST00000439392 497 ntTSL 1 (best) BASIC1.46□□□□□ -2.18
LINC00643Q86TS7 AC104389.3-201ENST00000445629 235 ntBASIC1.46□□□□□ -2.18
LINC00643Q86TS7 TPT1P13-201ENST00000449760 499 ntBASIC1.46□□□□□ -2.18
LINC00643Q86TS7 BX276092.4-201ENST00000452056 248 ntBASIC1.46□□□□□ -2.18
LINC00643Q86TS7 AC108751.4-201ENST00000462931 1001 ntTSL 2 BASIC1.46□□□□□ -2.18
LINC00643Q86TS7 AC108120.2-201ENST00000512973 294 ntBASIC1.46□□□□□ -2.18
LINC00643Q86TS7 SCGB1D5P-201ENST00000515134 247 ntBASIC1.46□□□□□ -2.18
LINC00643Q86TS7 RNA5SP473-201ENST00000516402 125 ntBASIC1.46□□□□□ -2.18
LINC00643Q86TS7 RNA5SP34-201ENST00000516887 130 ntBASIC1.46□□□□□ -2.18
LINC00643Q86TS7 AC023442.2-201ENST00000526455 270 ntTSL 3 BASIC1.46□□□□□ -2.18
LINC00643Q86TS7 CASP1-206ENST00000526568 1061 ntTSL 1 (best) BASIC1.46□□□□□ -2.18
LINC00643Q86TS7 AC006065.3-201ENST00000541769 419 ntTSL 5 BASIC1.46□□□□□ -2.18
LINC00643Q86TS7 MIR5186-201ENST00000577504 120 ntBASIC1.46□□□□□ -2.18
LINC00643Q86TS7 AC118755.2-201ENST00000584676 212 ntTSL 3 BASIC1.46□□□□□ -2.18
LINC00643Q86TS7 AC008543.3-201ENST00000586983 491 ntTSL 5 BASIC1.46□□□□□ -2.18
LINC00643Q86TS7 AC010928.1-202ENST00000589354 473 ntTSL 3 BASIC1.46□□□□□ -2.18
LINC00643Q86TS7 CERS6-AS1-202ENST00000594898 499 ntTSL 5 BASIC1.46□□□□□ -2.18
Retrieved 100 of 98,524 protein–RNA pairs in 118.8 ms