Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 AL158066.1-201ENST00000451298 3796 ntTSL 2 BASIC4.62□□□□□ -1.67
MSX2P35548 ANKRD49-208ENST00000544253 3002 ntTSL 1 (best) BASIC4.62□□□□□ -1.67
MSX2P35548 CFAP47-202ENST00000313548 1549 ntAPPRIS ALT2 TSL 1 (best) BASIC4.62□□□□□ -1.67
MSX2P35548 LINC01361-202ENST00000452834 1526 ntTSL 1 (best) BASIC4.62□□□□□ -1.67
MSX2P35548 EEF1A1-211ENST00000615060 3508 ntTSL 5 BASIC4.62□□□□□ -1.67
MSX2P35548 AL445487.1-201ENST00000415694 1580 ntBASIC4.62□□□□□ -1.67
MSX2P35548 EDIL3-202ENST00000380138 4244 ntTSL 1 (best) BASIC4.62□□□□□ -1.67
MSX2P35548 RNA5SP391-201ENST00000363456 119 ntBASIC4.62□□□□□ -1.67
MSX2P35548 RNU6-456P-201ENST00000384493 107 ntBASIC4.62□□□□□ -1.67
MSX2P35548 EIF5P1-201ENST00000400019 1231 ntBASIC4.62□□□□□ -1.67
MSX2P35548 AL357515.1-201ENST00000402967 542 ntBASIC4.62□□□□□ -1.67
MSX2P35548 AL122016.1-201ENST00000403365 367 ntBASIC4.62□□□□□ -1.67
MSX2P35548 AL080315.1-201ENST00000406055 466 ntBASIC4.62□□□□□ -1.67
MSX2P35548 RNU6-373P-201ENST00000411247 98 ntBASIC4.62□□□□□ -1.67
MSX2P35548 RAB28P1-201ENST00000411517 641 ntBASIC4.62□□□□□ -1.67
MSX2P35548 AC019097.1-201ENST00000424783 735 ntBASIC4.62□□□□□ -1.67
MSX2P35548 MTCO2P12-201ENST00000427426 682 ntBASIC4.62□□□□□ -1.67
MSX2P35548 YWHAZP8-201ENST00000436935 731 ntBASIC4.62□□□□□ -1.67
MSX2P35548 RPS15AP9-201ENST00000439856 381 ntBASIC4.62□□□□□ -1.67
MSX2P35548 AC016691.1-201ENST00000441321 413 ntBASIC4.62□□□□□ -1.67
MSX2P35548 MRPL48P1-201ENST00000445390 636 ntBASIC4.62□□□□□ -1.67
MSX2P35548 CBWD4P-201ENST00000445695 655 ntBASIC4.62□□□□□ -1.67
MSX2P35548 MRPL50P4-201ENST00000446432 475 ntBASIC4.62□□□□□ -1.67
MSX2P35548 LINC01758-201ENST00000448001 458 ntTSL 3 BASIC4.62□□□□□ -1.67
MSX2P35548 LINC01729-201ENST00000450640 358 ntTSL 3 BASIC4.62□□□□□ -1.67
MSX2P35548 HMGB3P21-201ENST00000452483 547 ntBASIC4.62□□□□□ -1.67
MSX2P35548 KIAA0895-209ENST00000453212 956 ntTSL 3 BASIC4.62□□□□□ -1.67
MSX2P35548 APOOP2-201ENST00000461561 539 ntBASIC4.62□□□□□ -1.67
MSX2P35548 AC007537.2-201ENST00000472093 511 ntBASIC4.62□□□□□ -1.67
MSX2P35548 AC117430.1-201ENST00000474711 801 ntTSL 5 BASIC4.62□□□□□ -1.67
MSX2P35548 RPS3AP50-201ENST00000487064 803 ntBASIC4.62□□□□□ -1.67
MSX2P35548 CEP170-216ENST00000490813 1070 ntTSL 1 (best) BASIC4.62□□□□□ -1.67
MSX2P35548 AC011396.1-201ENST00000507391 312 ntTSL 3 BASIC4.62□□□□□ -1.67
MSX2P35548 AC109464.3-201ENST00000509456 204 ntTSL 5 BASIC4.62□□□□□ -1.67
MSX2P35548 AC126768.1-201ENST00000511698 490 ntTSL 3 BASIC4.62□□□□□ -1.67
MSX2P35548 RPS3A-210ENST00000512690 845 ntTSL 3 BASIC4.62□□□□□ -1.67
MSX2P35548 AC008780.1-201ENST00000513392 409 ntTSL 5 BASIC4.62□□□□□ -1.67
MSX2P35548 UBE2Q2P10-201ENST00000514854 900 ntBASIC4.62□□□□□ -1.67
MSX2P35548 AC104316.1-201ENST00000521258 625 ntTSL 3 BASIC4.62□□□□□ -1.67
MSX2P35548 AP003072.2-201ENST00000527756 676 ntBASIC4.62□□□□□ -1.67
MSX2P35548 AC084838.1-201ENST00000532973 312 ntTSL 3 BASIC4.62□□□□□ -1.67
MSX2P35548 AC244502.1-203ENST00000541008 576 ntTSL 4 BASIC4.62□□□□□ -1.67
MSX2P35548 AC095350.2-201ENST00000544034 201 ntTSL 5 BASIC4.62□□□□□ -1.67
MSX2P35548 LINC00519-201ENST00000557518 682 ntTSL 2 BASIC4.62□□□□□ -1.67
MSX2P35548 MIR3118-1-201ENST00000581787 76 ntBASIC4.62□□□□□ -1.67
MSX2P35548 AC011477.5-201ENST00000586571 259 ntBASIC4.62□□□□□ -1.67
MSX2P35548 BBIP1P1-201ENST00000602999 279 ntBASIC4.62□□□□□ -1.67
MSX2P35548 OR10AB1P-201ENST00000609613 938 ntBASIC4.62□□□□□ -1.67
MSX2P35548 RNF20-202ENST00000389120 3940 ntAPPRIS P1 TSL 1 (best) BASIC4.62□□□□□ -1.67
MSX2P35548 MAPK10-304ENST00000641341 3984 ntBASIC4.62□□□□□ -1.67
MSX2P35548 MPDZ-204ENST00000381022 7589 ntAPPRIS ALT2 TSL 5 BASIC4.62□□□□□ -1.67
MSX2P35548 PUS7L-201ENST00000344862 13593 ntAPPRIS P1 TSL 1 (best) BASIC4.62□□□□□ -1.67
MSX2P35548 MUM1L1-202ENST00000357175 4173 ntAPPRIS P1 TSL 2 BASIC4.62□□□□□ -1.67
MSX2P35548 NFIB-211ENST00000606230 2311 ntTSL 5 BASIC4.62□□□□□ -1.67
MSX2P35548 SLC10A2-201ENST00000245312 3779 ntAPPRIS P1 TSL 1 (best) BASIC4.62□□□□□ -1.67
MSX2P35548 GPX8-203ENST00000503787 1411 ntAPPRIS P1 TSL 1 (best) BASIC4.62□□□□□ -1.67
MSX2P35548 MTX3-203ENST00000512560 4799 ntTSL 2 BASIC4.62□□□□□ -1.67
MSX2P35548 ATP8A2P2-201ENST00000437678 1568 ntBASIC4.61□□□□□ -1.67
MSX2P35548 CNTN5-209ENST00000528682 3800 ntAPPRIS P4 TSL 5 BASIC4.61□□□□□ -1.67
MSX2P35548 LYST-202ENST00000389794 12985 ntTSL 5 BASIC4.61□□□□□ -1.67
MSX2P35548 HMGB1-204ENST00000399489 1727 ntTSL 1 (best) BASIC4.61□□□□□ -1.67
MSX2P35548 BCAP29-203ENST00000379119 5773 ntTSL 3 BASIC4.61□□□□□ -1.67
MSX2P35548 ITCH-202ENST00000374864 6401 ntAPPRIS P1 TSL 1 (best) BASIC4.61□□□□□ -1.67
MSX2P35548 AC000123.3-201ENST00000624029 4975 ntBASIC4.61□□□□□ -1.67
MSX2P35548 DLD-204ENST00000437604 1859 ntTSL 2 BASIC4.61□□□□□ -1.67
MSX2P35548 PSMD1-213ENST00000619128 3161 ntAPPRIS ALT1 TSL 5 BASIC4.61□□□□□ -1.67
MSX2P35548 LINC02384-201ENST00000360485 471 ntTSL 5 BASIC4.61□□□□□ -1.67
MSX2P35548 RNU6-1120P-201ENST00000362988 108 ntBASIC4.61□□□□□ -1.67
MSX2P35548 Y_RNA.138-201ENST00000363462 102 ntBASIC4.61□□□□□ -1.67
MSX2P35548 AL354719.1-201ENST00000406535 843 ntBASIC4.61□□□□□ -1.67
MSX2P35548 SRGAP3-AS1-201ENST00000414633 428 ntTSL 2 BASIC4.61□□□□□ -1.67
MSX2P35548 SDHDP6-201ENST00000414693 480 ntBASIC4.61□□□□□ -1.67
MSX2P35548 LINC02542-201ENST00000418567 822 ntTSL 5 BASIC4.61□□□□□ -1.67
MSX2P35548 BX510359.3-201ENST00000422168 306 ntBASIC4.61□□□□□ -1.67
MSX2P35548 MTND2P23-201ENST00000422990 651 ntBASIC4.61□□□□□ -1.67
MSX2P35548 RPL30P3-201ENST00000424262 333 ntBASIC4.61□□□□□ -1.67
MSX2P35548 MTCO3P46-201ENST00000425787 232 ntBASIC4.61□□□□□ -1.67
MSX2P35548 SAR1AP4-201ENST00000429225 591 ntBASIC4.61□□□□□ -1.67
MSX2P35548 AL365400.1-201ENST00000431854 640 ntBASIC4.61□□□□□ -1.67
MSX2P35548 LANCL1-AS1-203ENST00000433296 864 ntTSL 2 BASIC4.61□□□□□ -1.67
MSX2P35548 AC105402.2-201ENST00000438503 358 ntBASIC4.61□□□□□ -1.67
MSX2P35548 KRTAP8-2P-201ENST00000440620 186 ntBASIC4.61□□□□□ -1.67
MSX2P35548 HMGB3P9-201ENST00000441799 583 ntBASIC4.61□□□□□ -1.67
MSX2P35548 AC009127.1-201ENST00000467090 155 ntBASIC4.61□□□□□ -1.67
MSX2P35548 AC104563.1-201ENST00000476147 376 ntBASIC4.61□□□□□ -1.67
MSX2P35548 TM4SF1-AS1-201ENST00000484046 488 ntTSL 3 BASIC4.61□□□□□ -1.67
MSX2P35548 LINC02379-201ENST00000505741 300 ntTSL 3 BASIC4.61□□□□□ -1.67
MSX2P35548 AC008638.1-201ENST00000506035 866 ntBASIC4.61□□□□□ -1.67
MSX2P35548 PCBP2P3-201ENST00000509726 843 ntBASIC4.61□□□□□ -1.67
MSX2P35548 AC109454.3-201ENST00000512748 669 ntTSL 3 BASIC4.61□□□□□ -1.67
MSX2P35548 PCAT4-202ENST00000514836 373 ntTSL 3 BASIC4.61□□□□□ -1.67
MSX2P35548 SPAG11B-207ENST00000528168 481 ntTSL 5 BASIC4.61□□□□□ -1.67
MSX2P35548 AC055878.1-201ENST00000531858 281 ntTSL 3 BASIC4.61□□□□□ -1.67
MSX2P35548 AP000786.1-201ENST00000541092 581 ntTSL 4 BASIC4.61□□□□□ -1.67
MSX2P35548 AL049779.1-201ENST00000553306 670 ntTSL 2 BASIC4.61□□□□□ -1.67
MSX2P35548 AC068446.3-201ENST00000555285 382 ntBASIC4.61□□□□□ -1.67
MSX2P35548 AC022404.1-201ENST00000555320 273 ntBASIC4.61□□□□□ -1.67
MSX2P35548 ITFG1-AS1-202ENST00000565694 494 ntTSL 2 BASIC4.61□□□□□ -1.67
MSX2P35548 RN7SL52P-201ENST00000584271 284 ntBASIC4.61□□□□□ -1.67
MSX2P35548 AC022916.4-201ENST00000585646 475 ntTSL 3 BASIC4.61□□□□□ -1.67
Retrieved 100 of 98,524 protein–RNA pairs in 76.7 ms