Protein–RNA interactions for Protein: P31249

HOXD3, Homeobox protein Hox-D3, humanhuman

Predicted RBP Predictions only

Length 432 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD3P31249 AC093824.1-201ENST00000508796 343 ntBASIC3.68□□□□□ -1.82
HOXD3P31249 EGFLAM-AS2-201ENST00000512603 466 ntTSL 5 BASIC3.68□□□□□ -1.82
HOXD3P31249 AC010342.1-201ENST00000514047 877 ntBASIC3.68□□□□□ -1.82
HOXD3P31249 ENPP7P9-201ENST00000514456 627 ntBASIC3.68□□□□□ -1.82
HOXD3P31249 LINC02492-204ENST00000515660 584 ntTSL 2 BASIC3.68□□□□□ -1.82
HOXD3P31249 RNU6-201P-201ENST00000517100 61 ntBASIC3.68□□□□□ -1.82
HOXD3P31249 AC016885.1-201ENST00000517796 532 ntTSL 4 BASIC3.68□□□□□ -1.82
HOXD3P31249 AC079098.1-202ENST00000523150 573 ntTSL 5 BASIC3.68□□□□□ -1.82
HOXD3P31249 TOMM20P2-201ENST00000540082 421 ntBASIC3.68□□□□□ -1.82
HOXD3P31249 AC044798.1-201ENST00000565146 418 ntTSL 5 BASIC3.68□□□□□ -1.82
HOXD3P31249 SNORA59B-202ENST00000578183 701 ntBASIC3.68□□□□□ -1.82
HOXD3P31249 MIR3682-201ENST00000581338 84 ntBASIC3.68□□□□□ -1.82
HOXD3P31249 MIR3118-1-201ENST00000581787 76 ntBASIC3.68□□□□□ -1.82
HOXD3P31249 MIR4715-201ENST00000584117 79 ntBASIC3.68□□□□□ -1.82
HOXD3P31249 AL353997.4-201ENST00000586196 166 ntBASIC3.68□□□□□ -1.82
HOXD3P31249 HMGB2P1-201ENST00000591146 634 ntBASIC3.68□□□□□ -1.82
HOXD3P31249 AL020997.2-201ENST00000602607 184 ntBASIC3.68□□□□□ -1.82
HOXD3P31249 DUXAP4-201ENST00000603046 613 ntBASIC3.68□□□□□ -1.82
HOXD3P31249 AL139286.1-201ENST00000604465 483 ntBASIC3.68□□□□□ -1.82
HOXD3P31249 AL355472.4-201ENST00000610233 626 ntBASIC3.68□□□□□ -1.82
HOXD3P31249 LINC00901.1-201ENST00000617252 152 ntBASIC3.68□□□□□ -1.82
HOXD3P31249 AC009159.1-201ENST00000618386 642 ntBASIC3.68□□□□□ -1.82
HOXD3P31249 AL359880.1-201ENST00000621879 266 ntBASIC3.68□□□□□ -1.82
HOXD3P31249 AC010149.2-201ENST00000637608 315 ntBASIC3.68□□□□□ -1.82
HOXD3P31249 AC092017.3-201ENST00000638880 536 ntAPPRIS P1 TSL 5 BASIC3.68□□□□□ -1.82
HOXD3P31249 AC090229.1-201ENST00000590983 1609 ntBASIC3.68□□□□□ -1.82
HOXD3P31249 OR14L1P-202ENST00000641545 3009 ntBASIC3.68□□□□□ -1.82
HOXD3P31249 INPP4B-215ENST00000509777 4334 ntTSL 5 BASIC3.68□□□□□ -1.82
HOXD3P31249 SSR1-202ENST00000397511 3248 ntTSL 5 BASIC3.68□□□□□ -1.82
HOXD3P31249 AL139811.1-201ENST00000424779 2299 ntBASIC3.68□□□□□ -1.82
HOXD3P31249 AL136164.3-201ENST00000624429 3978 ntBASIC3.68□□□□□ -1.82
HOXD3P31249 AC083843.3-201ENST00000623679 2186 ntBASIC3.68□□□□□ -1.82
HOXD3P31249 AC097504.1-201ENST00000515103 2415 ntBASIC3.68□□□□□ -1.82
HOXD3P31249 RNMT-209ENST00000592764 4108 ntTSL 2 BASIC3.68□□□□□ -1.82
HOXD3P31249 OR6K3-201ENST00000368145 1844 ntAPPRIS P1 BASIC3.67□□□□□ -1.82
HOXD3P31249 MBNL1-224ENST00000545754 5147 ntTSL 5 BASIC3.67□□□□□ -1.82
HOXD3P31249 ADGRL2-205ENST00000370717 5873 ntAPPRIS ALT2 TSL 5 BASIC3.67□□□□□ -1.82
HOXD3P31249 SLC1A3-202ENST00000381918 3652 ntTSL 1 (best) BASIC3.67□□□□□ -1.82
HOXD3P31249 ERGIC2-201ENST00000360150 5014 ntAPPRIS P1 TSL 1 (best) BASIC3.67□□□□□ -1.82
HOXD3P31249 ZNF678-202ENST00000397097 8212 ntAPPRIS P1 TSL 1 (best) BASIC3.67□□□□□ -1.82
HOXD3P31249 ACTR3BP5-201ENST00000448440 1479 ntBASIC3.67□□□□□ -1.82
HOXD3P31249 CENPE-208ENST00000611174 8260 ntTSL 5 BASIC3.67□□□□□ -1.82
HOXD3P31249 PCDH15-218ENST00000437009 6804 ntTSL 5 BASIC3.67□□□□□ -1.82
HOXD3P31249 ITGB1-205ENST00000423113 3729 ntAPPRIS ALT1 TSL 5 BASIC3.67□□□□□ -1.82
HOXD3P31249 TM4SF1-202ENST00000472441 3115 ntTSL 2 BASIC3.67□□□□□ -1.82
HOXD3P31249 AL442639.1-201ENST00000625030 1899 ntBASIC3.67□□□□□ -1.82
HOXD3P31249 RPS6KA6-204ENST00000620340 8169 ntTSL 5 BASIC3.67□□□□□ -1.82
HOXD3P31249 PAN3-202ENST00000399613 4940 ntAPPRIS ALT2 TSL 5 BASIC3.67□□□□□ -1.82
HOXD3P31249 FKTN-201ENST00000223528 7364 ntAPPRIS P1 TSL 1 (best) BASIC3.67□□□□□ -1.82
HOXD3P31249 BDH2-201ENST00000296424 1126 ntAPPRIS P1 TSL 1 (best) BASIC3.67□□□□□ -1.82
HOXD3P31249 DEFB114-201ENST00000322066 253 ntAPPRIS P1 TSL 1 (best) BASIC3.67□□□□□ -1.82
HOXD3P31249 AL161781.1-201ENST00000354277 403 ntBASIC3.67□□□□□ -1.82
HOXD3P31249 AC068538.1-201ENST00000376856 336 ntBASIC3.67□□□□□ -1.82
HOXD3P31249 Y_RNA.453-201ENST00000384223 109 ntBASIC3.67□□□□□ -1.82
HOXD3P31249 RNU6-1207P-201ENST00000384343 107 ntBASIC3.67□□□□□ -1.82
HOXD3P31249 ENSAP1-201ENST00000392855 326 ntBASIC3.67□□□□□ -1.82
HOXD3P31249 PSMA4-202ENST00000413382 1019 ntTSL 1 (best) BASIC3.67□□□□□ -1.82
HOXD3P31249 AL138826.1-202ENST00000415106 692 ntAPPRIS P1 TSL 2 BASIC3.67□□□□□ -1.82
HOXD3P31249 MTCYBP24-201ENST00000420387 1106 ntBASIC3.67□□□□□ -1.82
HOXD3P31249 PIGFP2-201ENST00000421400 651 ntBASIC3.67□□□□□ -1.82
HOXD3P31249 FABP7P1-201ENST00000424004 391 ntBASIC3.67□□□□□ -1.82
HOXD3P31249 AL033539.1-201ENST00000427775 743 ntTSL 3 BASIC3.67□□□□□ -1.82
HOXD3P31249 AL359265.2-201ENST00000434367 631 ntBASIC3.67□□□□□ -1.82
HOXD3P31249 TRAPPC2P9-201ENST00000434556 343 ntBASIC3.67□□□□□ -1.82
HOXD3P31249 AC016831.4-201ENST00000438302 307 ntBASIC3.67□□□□□ -1.82
HOXD3P31249 SDCBPP1-201ENST00000440192 890 ntBASIC3.67□□□□□ -1.82
HOXD3P31249 MTATP6P30-201ENST00000443540 664 ntBASIC3.67□□□□□ -1.82
HOXD3P31249 AC069542.1-201ENST00000445235 557 ntTSL 3 BASIC3.67□□□□□ -1.82
HOXD3P31249 WASF1P1-201ENST00000447560 1131 ntBASIC3.67□□□□□ -1.82
HOXD3P31249 AL365271.1-201ENST00000448909 603 ntTSL 3 BASIC3.67□□□□□ -1.82
HOXD3P31249 C1DP4-201ENST00000455429 424 ntBASIC3.67□□□□□ -1.82
HOXD3P31249 AL034349.1-201ENST00000458367 549 ntTSL 5 BASIC3.67□□□□□ -1.82
HOXD3P31249 AC034222.1-201ENST00000494052 532 ntBASIC3.67□□□□□ -1.82
HOXD3P31249 ARHGEF3-AS1-202ENST00000495939 336 ntTSL 3 BASIC3.67□□□□□ -1.82
HOXD3P31249 RNF138P1-201ENST00000502765 546 ntBASIC3.67□□□□□ -1.82
HOXD3P31249 AC022272.1-201ENST00000503478 777 ntTSL 2 BASIC3.67□□□□□ -1.82
HOXD3P31249 SCARNA22-201ENST00000503991 125 ntBASIC3.67□□□□□ -1.82
HOXD3P31249 ARL4AP2-201ENST00000507378 601 ntBASIC3.67□□□□□ -1.82
HOXD3P31249 AL159163.1-201ENST00000507747 600 ntAPPRIS P1 TSL 5 BASIC3.67□□□□□ -1.82
HOXD3P31249 AC079467.1-201ENST00000508512 503 ntTSL 3 BASIC3.67□□□□□ -1.82
HOXD3P31249 AC091868.1-201ENST00000508746 304 ntBASIC3.67□□□□□ -1.82
HOXD3P31249 SAP18P1-201ENST00000512058 390 ntBASIC3.67□□□□□ -1.82
HOXD3P31249 AC093853.1-201ENST00000515689 483 ntBASIC3.67□□□□□ -1.82
HOXD3P31249 Y_RNA.704-201ENST00000516851 102 ntBASIC3.67□□□□□ -1.82
HOXD3P31249 IGKV2D-36-201ENST00000518643 226 ntBASIC3.67□□□□□ -1.82
HOXD3P31249 AP001207.3-201ENST00000520268 491 ntTSL 3 BASIC3.67□□□□□ -1.82
HOXD3P31249 AP005357.1-201ENST00000520749 476 ntTSL 3 BASIC3.67□□□□□ -1.82
HOXD3P31249 DYNLL1P4-201ENST00000549314 266 ntBASIC3.67□□□□□ -1.82
HOXD3P31249 PCLAF-207ENST00000559519 749 ntTSL 2 BASIC3.67□□□□□ -1.82
HOXD3P31249 AC107954.1-201ENST00000565906 727 ntBASIC3.67□□□□□ -1.82
HOXD3P31249 AC053481.3-201ENST00000577881 843 ntBASIC3.67□□□□□ -1.82
HOXD3P31249 MIR5699-201ENST00000578903 90 ntBASIC3.67□□□□□ -1.82
HOXD3P31249 AP005119.2-201ENST00000579735 1105 ntBASIC3.67□□□□□ -1.82
HOXD3P31249 AC090409.2-202ENST00000585706 604 ntTSL 5 BASIC3.67□□□□□ -1.82
HOXD3P31249 AC011518.1-202ENST00000592668 407 ntTSL 5 BASIC3.67□□□□□ -1.82
HOXD3P31249 RPL23AP92-201ENST00000603609 255 ntBASIC3.67□□□□□ -1.82
HOXD3P31249 AC067959.1-201ENST00000604334 379 ntBASIC3.67□□□□□ -1.82
HOXD3P31249 AL161734.1-201ENST00000609720 557 ntBASIC3.67□□□□□ -1.82
HOXD3P31249 AC012409.3-201ENST00000611343 981 ntBASIC3.67□□□□□ -1.82
HOXD3P31249 LDHA-225ENST00000625635 141 ntTSL 5 BASIC3.67□□□□□ -1.82
Retrieved 100 of 98,524 protein–RNA pairs in 103.7 ms