Protein–RNA interactions for Protein: P25940

COL5A3, Collagen alpha-3(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,745 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A3P25940 Y_RNA.226-201ENST00000364337 114 ntBASIC2.95□□□□□ -1.94
COL5A3P25940 SPRR2D-203ENST00000368757 800 ntAPPRIS P1 TSL 3 BASIC2.95□□□□□ -1.94
COL5A3P25940 AC009302.1-201ENST00000417147 390 ntBASIC2.95□□□□□ -1.94
COL5A3P25940 RANP7-201ENST00000418085 644 ntBASIC2.95□□□□□ -1.94
COL5A3P25940 AP000477.2-201ENST00000447405 778 ntTSL 3 BASIC2.95□□□□□ -1.94
COL5A3P25940 AC108860.1-201ENST00000484521 383 ntBASIC2.95□□□□□ -1.94
COL5A3P25940 AC044913.1-201ENST00000557200 430 ntBASIC2.95□□□□□ -1.94
COL5A3P25940 MIR5007-201ENST00000583098 95 ntBASIC2.95□□□□□ -1.94
COL5A3P25940 KNTC1-205ENST00000450485 3655 ntTSL 2 BASIC2.95□□□□□ -1.94
COL5A3P25940 DNAH12-208ENST00000495027 12146 ntAPPRIS P1 TSL 5 BASIC2.94□□□□□ -1.94
COL5A3P25940 FBXL13-204ENST00000436908 2577 ntTSL 5 BASIC2.94□□□□□ -1.94
COL5A3P25940 CUL1P1-201ENST00000509510 2425 ntBASIC2.94□□□□□ -1.94
COL5A3P25940 AL023284.1-201ENST00000403956 276 ntBASIC2.94□□□□□ -1.94
COL5A3P25940 AL591416.1-201ENST00000404015 867 ntBASIC2.94□□□□□ -1.94
COL5A3P25940 MTCO2P17-201ENST00000424336 677 ntBASIC2.94□□□□□ -1.94
COL5A3P25940 HMGN2P23-201ENST00000456759 269 ntBASIC2.94□□□□□ -1.94
COL5A3P25940 RPL9P33-201ENST00000484311 566 ntBASIC2.94□□□□□ -1.94
COL5A3P25940 LINC02269-201ENST00000509968 511 ntTSL 3 BASIC2.94□□□□□ -1.94
COL5A3P25940 RNA5SP458-201ENST00000516188 119 ntBASIC2.94□□□□□ -1.94
COL5A3P25940 MAL2-205ENST00000521048 575 ntTSL 4 BASIC2.94□□□□□ -1.94
COL5A3P25940 MTCYBP20-201ENST00000524239 1129 ntBASIC2.94□□□□□ -1.94
COL5A3P25940 C14orf105-204ENST00000526336 598 ntTSL 4 BASIC2.94□□□□□ -1.94
COL5A3P25940 AP002833.1-201ENST00000530572 566 ntTSL 3 BASIC2.94□□□□□ -1.94
COL5A3P25940 FILIP1L-209ENST00000487087 2321 ntTSL 5 BASIC2.94□□□□□ -1.94
COL5A3P25940 AC093725.1-201ENST00000508135 2672 ntTSL 5 BASIC2.94□□□□□ -1.94
COL5A3P25940 RAPGEF6-210ENST00000512052 3535 ntTSL 2 BASIC2.94□□□□□ -1.94
COL5A3P25940 FOXP2-210ENST00000403559 6415 ntTSL 2 BASIC2.94□□□□□ -1.94
COL5A3P25940 SAGE1-202ENST00000370709 2879 ntAPPRIS P2 TSL 5 BASIC2.94□□□□□ -1.94
COL5A3P25940 AL445437.1-201ENST00000623157 3087 ntBASIC2.94□□□□□ -1.94
COL5A3P25940 TEX43-201ENST00000357147 464 ntAPPRIS P1 TSL 1 (best) BASIC2.93□□□□□ -1.94
COL5A3P25940 SNORA64-201ENST00000384674 134 ntBASIC2.93□□□□□ -1.94
COL5A3P25940 UQCRFS1P3-201ENST00000407697 385 ntBASIC2.93□□□□□ -1.94
COL5A3P25940 BTG3P1-201ENST00000435859 716 ntBASIC2.93□□□□□ -1.94
COL5A3P25940 RNU7-157P-201ENST00000459600 66 ntBASIC2.93□□□□□ -1.94
COL5A3P25940 ZDHHC20P3-201ENST00000531576 336 ntBASIC2.93□□□□□ -1.94
COL5A3P25940 ATF7IP2-206ENST00000543967 998 ntTSL 2 BASIC2.93□□□□□ -1.94
COL5A3P25940 AC007610.2-201ENST00000566770 666 ntTSL 3 BASIC2.93□□□□□ -1.94
COL5A3P25940 MACROD2-IT1-202ENST00000605675 575 ntTSL 5 BASIC2.93□□□□□ -1.94
COL5A3P25940 AL137246.1-201ENST00000607072 977 ntBASIC2.93□□□□□ -1.94
COL5A3P25940 AC027045.1-201ENST00000609065 202 ntTSL 5 BASIC2.93□□□□□ -1.94
COL5A3P25940 AL512643.1-201ENST00000635735 524 ntBASIC2.93□□□□□ -1.94
COL5A3P25940 HELZ-201ENST00000358691 13810 ntTSL 1 (best) BASIC2.93□□□□□ -1.94
COL5A3P25940 OR10AB1P-202ENST00000641219 1686 ntBASIC2.93□□□□□ -1.94
COL5A3P25940 N4BP2L2-201ENST00000267068 9427 ntAPPRIS P1 TSL 1 (best) BASIC2.93□□□□□ -1.94
COL5A3P25940 ART3-202ENST00000349321 1528 ntAPPRIS P3 TSL 1 (best) BASIC2.93□□□□□ -1.94
COL5A3P25940 TRAJ26-201ENST00000390511 60 ntAPPRIS P1 BASIC2.93□□□□□ -1.94
COL5A3P25940 MTCO3P31-201ENST00000405526 789 ntBASIC2.93□□□□□ -1.94
COL5A3P25940 RN7SKP32-201ENST00000410167 303 ntBASIC2.93□□□□□ -1.94
COL5A3P25940 RNA5SP76-201ENST00000516277 87 ntBASIC2.93□□□□□ -1.94
COL5A3P25940 PIH1D2-208ENST00000532211 1103 ntAPPRIS P1 TSL 5 BASIC2.93□□□□□ -1.94
COL5A3P25940 AC018410.2-201ENST00000540410 610 ntTSL 5 BASIC2.93□□□□□ -1.94
COL5A3P25940 AC026464.5-201ENST00000562497 722 ntBASIC2.93□□□□□ -1.94
COL5A3P25940 C18orf54-203ENST00000578138 776 ntTSL 3 BASIC2.93□□□□□ -1.94
COL5A3P25940 BNIP3P8-201ENST00000597863 560 ntBASIC2.93□□□□□ -1.94
COL5A3P25940 AC010680.4-201ENST00000605334 543 ntBASIC2.93□□□□□ -1.94
COL5A3P25940 LINC00397-202ENST00000606785 409 ntTSL 5 BASIC2.93□□□□□ -1.94
COL5A3P25940 AC067747.1-201ENST00000608026 250 ntBASIC2.93□□□□□ -1.94
COL5A3P25940 CR589904.2-201ENST00000612533 440 ntBASIC2.93□□□□□ -1.94
COL5A3P25940 AC093909.5-201ENST00000621839 1799 ntBASIC2.93□□□□□ -1.94
COL5A3P25940 XRCC4-203ENST00000396027 1530 ntAPPRIS ALT1 TSL 5 BASIC2.92□□□□□ -1.94
COL5A3P25940 GABRA2-209ENST00000510861 3411 ntAPPRIS P1 TSL 5 BASIC2.92□□□□□ -1.94
COL5A3P25940 AC002543.1-201ENST00000299783 1954 ntBASIC2.92□□□□□ -1.94
COL5A3P25940 NCSTNP1-201ENST00000406229 144 ntBASIC2.92□□□□□ -1.94
COL5A3P25940 AL162725.2-201ENST00000430545 748 ntTSL 5 BASIC2.92□□□□□ -1.94
COL5A3P25940 TTTY16-201ENST00000437686 192 ntTSL 1 (best) BASIC2.92□□□□□ -1.94
COL5A3P25940 LINC01825-201ENST00000452381 850 ntTSL 3 BASIC2.92□□□□□ -1.94
COL5A3P25940 AP001086.1-201ENST00000494882 321 ntBASIC2.92□□□□□ -1.94
COL5A3P25940 LINC02465-201ENST00000507099 532 ntTSL 4 BASIC2.92□□□□□ -1.94
COL5A3P25940 AC110288.1-201ENST00000517950 446 ntTSL 3 BASIC2.92□□□□□ -1.94
COL5A3P25940 AP005059.2-201ENST00000577527 578 ntTSL 3 BASIC2.92□□□□□ -1.94
COL5A3P25940 CEP44-203ENST00000426172 3037 ntTSL 5 BASIC2.92□□□□□ -1.94
COL5A3P25940 GNAI3-201ENST00000369851 27174 ntAPPRIS P1 TSL 1 (best) BASIC2.92□□□□□ -1.94
COL5A3P25940 GABRG2-209ENST00000638660 3799 ntTSL 5 BASIC2.92□□□□□ -1.94
COL5A3P25940 SNORA81-201ENST00000408493 178 ntBASIC2.91□□□□□ -1.94
COL5A3P25940 AL139156.1-201ENST00000412785 841 ntBASIC2.91□□□□□ -1.94
COL5A3P25940 SOS1-IT1-201ENST00000420644 539 ntTSL 5 BASIC2.91□□□□□ -1.94
COL5A3P25940 AL513175.2-201ENST00000422071 443 ntBASIC2.91□□□□□ -1.94
COL5A3P25940 AC010881.1-201ENST00000433830 235 ntBASIC2.91□□□□□ -1.94
COL5A3P25940 AL360169.1-201ENST00000435116 143 ntTSL 5 BASIC2.91□□□□□ -1.94
COL5A3P25940 COX6CP2-201ENST00000444980 225 ntBASIC2.91□□□□□ -1.94
COL5A3P25940 AL354710.1-201ENST00000453641 246 ntBASIC2.91□□□□□ -1.94
COL5A3P25940 RPL23AP62-201ENST00000463396 453 ntBASIC2.91□□□□□ -1.94
COL5A3P25940 AP001521.1-201ENST00000609150 300 ntBASIC2.91□□□□□ -1.94
COL5A3P25940 AC016252.1-201ENST00000609721 474 ntBASIC2.91□□□□□ -1.94
COL5A3P25940 AC114316.2-202ENST00000502934 2957 ntTSL 2 BASIC2.91□□□□□ -1.94
COL5A3P25940 MTND5P23-201ENST00000430812 1655 ntBASIC2.91□□□□□ -1.94
COL5A3P25940 HMGB1P11-201ENST00000413899 637 ntBASIC2.9□□□□□ -1.94
COL5A3P25940 VTA1P1-201ENST00000414044 866 ntBASIC2.9□□□□□ -1.94
COL5A3P25940 AL645939.1-201ENST00000453429 797 ntBASIC2.9□□□□□ -1.94
COL5A3P25940 GRM7-AS3-208ENST00000455623 947 ntTSL 3 BASIC2.9□□□□□ -1.94
COL5A3P25940 THAP6-203ENST00000502620 582 ntTSL 3 BASIC2.9□□□□□ -1.94
COL5A3P25940 SAR1B-211ENST00000509937 455 ntTSL 5 BASIC2.9□□□□□ -1.94
COL5A3P25940 XKRY-201ENST00000510392 1100 ntBASIC2.9□□□□□ -1.94
COL5A3P25940 AC120349.1-201ENST00000599498 282 ntTSL 5 BASIC2.9□□□□□ -1.94
COL5A3P25940 ERBIN-214ENST00000511297 4257 ntAPPRIS ALT1 TSL 5 BASIC2.9□□□□□ -1.95
COL5A3P25940 KMO-204ENST00000366559 5261 ntAPPRIS P2 TSL 1 (best) BASIC2.9□□□□□ -1.95
COL5A3P25940 RPS15AP6-201ENST00000420703 385 ntBASIC2.9□□□□□ -1.95
COL5A3P25940 SEPT7P6-201ENST00000469999 1143 ntBASIC2.9□□□□□ -1.95
COL5A3P25940 RPS27AP9-201ENST00000477681 438 ntBASIC2.9□□□□□ -1.95
COL5A3P25940 AC098868.1-201ENST00000512628 624 ntTSL 2 BASIC2.9□□□□□ -1.95
Retrieved 100 of 98,524 protein–RNA pairs in 98.9 ms