Protein–RNA interactions for Protein: P22670

RFX1, MHC class II regulatory factor RFX1, humanhuman

Predictions only

Length 979 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFX1P22670 ANK3-201ENST00000280772 16874 ntAPPRIS P3 TSL 1 (best) BASIC6.15□□□□□ -1.43
RFX1P22670 EIF2AK2-204ENST00000405334 1533 ntTSL 1 (best) BASIC6.15□□□□□ -1.43
RFX1P22670 SV2B-201ENST00000330276 11202 ntAPPRIS P1 TSL 1 (best) BASIC6.14□□□□□ -1.43
RFX1P22670 AL050331.3-201ENST00000448740 2081 ntTSL 2 BASIC6.14□□□□□ -1.43
RFX1P22670 OR4F13P-202ENST00000560066 2054 ntBASIC6.14□□□□□ -1.43
RFX1P22670 TPTE2P4-201ENST00000258589 1605 ntBASIC6.14□□□□□ -1.43
RFX1P22670 TC2N-203ENST00000435962 5146 ntAPPRIS P1 TSL 2 BASIC6.14□□□□□ -1.43
RFX1P22670 PPEF1-202ENST00000361511 2890 ntAPPRIS P1 TSL 1 (best) BASIC6.14□□□□□ -1.43
RFX1P22670 IL1RAP-205ENST00000412504 4875 ntAPPRIS P1 TSL 1 (best) BASIC6.14□□□□□ -1.43
RFX1P22670 RGSL1-201ENST00000294854 3696 ntAPPRIS P1 TSL 1 (best) BASIC6.14□□□□□ -1.43
RFX1P22670 AC087473.1-201ENST00000561320 2471 ntTSL 1 (best) BASIC6.14□□□□□ -1.43
RFX1P22670 LINC02532-209ENST00000602934 2464 ntTSL 2 BASIC6.14□□□□□ -1.43
RFX1P22670 KAT6B-201ENST00000287239 8287 ntAPPRIS P3 TSL 1 (best) BASIC6.14□□□□□ -1.43
RFX1P22670 AL121886.1-201ENST00000358609 435 ntBASIC6.14□□□□□ -1.43
RFX1P22670 RNU6-1287P-201ENST00000362914 107 ntBASIC6.14□□□□□ -1.43
RFX1P22670 RN7SKP124-201ENST00000364730 341 ntBASIC6.14□□□□□ -1.43
RFX1P22670 Y_RNA.339-201ENST00000365325 102 ntBASIC6.14□□□□□ -1.43
RFX1P22670 Y_RNA.378-201ENST00000365652 113 ntBASIC6.14□□□□□ -1.43
RFX1P22670 RNU6-1060P-201ENST00000384664 107 ntBASIC6.14□□□□□ -1.43
RFX1P22670 SNORA68.2-201ENST00000391263 128 ntBASIC6.14□□□□□ -1.43
RFX1P22670 MIR548P-201ENST00000408336 84 ntBASIC6.14□□□□□ -1.43
RFX1P22670 MRPL53P1-201ENST00000414323 319 ntBASIC6.14□□□□□ -1.43
RFX1P22670 UBE2FP1-201ENST00000416536 447 ntBASIC6.14□□□□□ -1.43
RFX1P22670 AC138761.5-201ENST00000433967 325 ntBASIC6.14□□□□□ -1.43
RFX1P22670 MTCO3P45-201ENST00000443036 613 ntBASIC6.14□□□□□ -1.43
RFX1P22670 LINC02210-201ENST00000444561 288 ntBASIC6.14□□□□□ -1.43
RFX1P22670 AL139121.1-201ENST00000445647 244 ntTSL 2 BASIC6.14□□□□□ -1.43
RFX1P22670 AL590399.6-201ENST00000446396 307 ntBASIC6.14□□□□□ -1.43
RFX1P22670 AC093270.2-201ENST00000486157 792 ntBASIC6.14□□□□□ -1.43
RFX1P22670 AC004889.1-208ENST00000489077 423 ntTSL 3 BASIC6.14□□□□□ -1.43
RFX1P22670 AL049874.2-201ENST00000492636 288 ntBASIC6.14□□□□□ -1.43
RFX1P22670 TRBVA-201ENST00000498804 316 ntBASIC6.14□□□□□ -1.43
RFX1P22670 AC104806.1-201ENST00000508720 308 ntBASIC6.14□□□□□ -1.43
RFX1P22670 AC097486.1-201ENST00000515331 210 ntBASIC6.14□□□□□ -1.43
RFX1P22670 SNORA43.3-201ENST00000517240 103 ntBASIC6.14□□□□□ -1.43
RFX1P22670 AC021698.1-201ENST00000524858 716 ntTSL 3 BASIC6.14□□□□□ -1.43
RFX1P22670 AC090092.1-201ENST00000530576 510 ntTSL 2 BASIC6.14□□□□□ -1.43
RFX1P22670 AC090023.2-201ENST00000540875 545 ntTSL 3 BASIC6.14□□□□□ -1.43
RFX1P22670 AL390726.5-202ENST00000564800 256 ntBASIC6.14□□□□□ -1.43
RFX1P22670 LINC00649-204ENST00000593977 640 ntTSL 5 BASIC6.14□□□□□ -1.43
RFX1P22670 AC007546.1-201ENST00000619452 559 ntBASIC6.14□□□□□ -1.43
RFX1P22670 AC072062.1-209ENST00000627336 772 ntTSL 5 BASIC6.14□□□□□ -1.43
RFX1P22670 IL7R-201ENST00000303115 4626 ntAPPRIS P1 TSL 1 (best) BASIC6.14□□□□□ -1.43
RFX1P22670 ZNF195-201ENST00000005082 2021 ntAPPRIS ALT2 TSL 1 (best) BASIC6.14□□□□□ -1.43
RFX1P22670 ZNF26-201ENST00000328654 17601 ntAPPRIS P3 TSL 1 (best) BASIC6.14□□□□□ -1.43
RFX1P22670 SLC12A1-205ENST00000558405 3426 ntAPPRIS P3 TSL 1 (best) BASIC6.14□□□□□ -1.43
RFX1P22670 MPDZ-208ENST00000447879 6262 ntAPPRIS ALT2 TSL 1 (best) BASIC6.14□□□□□ -1.43
RFX1P22670 CCDC62-205ENST00000537566 3537 ntAPPRIS ALT2 TSL 2 BASIC6.14□□□□□ -1.43
RFX1P22670 FRMD7-202ENST00000370879 2864 ntTSL 1 (best) BASIC6.14□□□□□ -1.43
RFX1P22670 ATXN3L-201ENST00000380622 2164 ntAPPRIS P1 BASIC6.14□□□□□ -1.43
RFX1P22670 OTOGL-204ENST00000547103 8032 ntAPPRIS ALT2 TSL 5 BASIC6.14□□□□□ -1.43
RFX1P22670 NPHP1-204ENST00000417665 2246 ntTSL 5 BASIC6.14□□□□□ -1.43
RFX1P22670 GABRA1-215ENST00000636573 2262 ntAPPRIS P1 TSL 5 BASIC6.14□□□□□ -1.43
RFX1P22670 ADAM18-202ENST00000379866 2314 ntAPPRIS ALT2 TSL 1 (best) BASIC6.14□□□□□ -1.43
RFX1P22670 C6orf10-203ENST00000442822 1696 ntAPPRIS ALT2 TSL 1 (best) BASIC6.14□□□□□ -1.43
RFX1P22670 AASDH-210ENST00000602986 3480 ntTSL 5 BASIC6.13□□□□□ -1.43
RFX1P22670 CAPRIN2-203ENST00000417045 3535 ntTSL 1 (best) BASIC6.13□□□□□ -1.43
RFX1P22670 DECR1-215ENST00000522161 1766 ntAPPRIS ALT2 TSL 2 BASIC6.13□□□□□ -1.43
RFX1P22670 ARPP19-208ENST00000566423 5362 ntAPPRIS P1 TSL 1 (best) BASIC6.13□□□□□ -1.43
RFX1P22670 ST8SIA4-201ENST00000231461 6303 ntAPPRIS P1 TSL 1 (best) BASIC6.13□□□□□ -1.43
RFX1P22670 DDX58-201ENST00000379868 4089 ntTSL 5 BASIC6.13□□□□□ -1.43
RFX1P22670 FCRL5-202ENST00000368189 4424 ntTSL 1 (best) BASIC6.13□□□□□ -1.43
RFX1P22670 SNORD113-7-201ENST00000363762 77 ntBASIC6.13□□□□□ -1.43
RFX1P22670 Y_RNA.212-201ENST00000364177 102 ntBASIC6.13□□□□□ -1.43
RFX1P22670 RNU6-1297P-201ENST00000384415 104 ntBASIC6.13□□□□□ -1.43
RFX1P22670 MIR585-201ENST00000384887 94 ntBASIC6.13□□□□□ -1.43
RFX1P22670 MIR559-201ENST00000385188 96 ntBASIC6.13□□□□□ -1.43
RFX1P22670 MIR1286-201ENST00000408112 78 ntBASIC6.13□□□□□ -1.43
RFX1P22670 TXNIP-201ENST00000425134 1225 ntTSL 2 BASIC6.13□□□□□ -1.43
RFX1P22670 RPS3AP52-201ENST00000435639 297 ntBASIC6.13□□□□□ -1.43
RFX1P22670 CYCSP51-201ENST00000443545 318 ntBASIC6.13□□□□□ -1.43
RFX1P22670 AC114877.1-201ENST00000446601 582 ntTSL 4 BASIC6.13□□□□□ -1.43
RFX1P22670 Y_RNA.639-201ENST00000458981 102 ntBASIC6.13□□□□□ -1.43
RFX1P22670 RN7SL197P-201ENST00000466981 299 ntBASIC6.13□□□□□ -1.43
RFX1P22670 RN7SL826P-201ENST00000479724 288 ntBASIC6.13□□□□□ -1.43
RFX1P22670 RN7SL184P-201ENST00000488308 297 ntBASIC6.13□□□□□ -1.43
RFX1P22670 APOA2-210ENST00000491350 263 ntTSL 1 (best) BASIC6.13□□□□□ -1.43
RFX1P22670 CCDC34P1-201ENST00000507441 517 ntBASIC6.13□□□□□ -1.43
RFX1P22670 AC091906.1-201ENST00000511310 391 ntTSL 2 BASIC6.13□□□□□ -1.43
RFX1P22670 RNU6-1095P-201ENST00000516148 108 ntBASIC6.13□□□□□ -1.43
RFX1P22670 Y_RNA.718-201ENST00000517110 102 ntBASIC6.13□□□□□ -1.43
RFX1P22670 AC124290.1-202ENST00000523342 387 ntTSL 3 BASIC6.13□□□□□ -1.43
RFX1P22670 AC107918.3-201ENST00000533272 382 ntBASIC6.13□□□□□ -1.43
RFX1P22670 AC027018.1-202ENST00000534723 383 ntTSL 3 BASIC6.13□□□□□ -1.43
RFX1P22670 LINC01269-201ENST00000553682 602 ntTSL 4 BASIC6.13□□□□□ -1.43
RFX1P22670 AC026992.1-201ENST00000558269 571 ntTSL 2 BASIC6.13□□□□□ -1.43
RFX1P22670 LINC00933-205ENST00000560917 449 ntTSL 3 BASIC6.13□□□□□ -1.43
RFX1P22670 AC066612.1-202ENST00000561094 518 ntTSL 5 BASIC6.13□□□□□ -1.43
RFX1P22670 AC009597.2-201ENST00000604659 592 ntBASIC6.13□□□□□ -1.43
RFX1P22670 AP000942.4-201ENST00000604811 241 ntBASIC6.13□□□□□ -1.43
RFX1P22670 RPSAP73-201ENST00000614820 330 ntBASIC6.13□□□□□ -1.43
RFX1P22670 WFDC11-203ENST00000618797 561 ntAPPRIS P1 TSL 5 BASIC6.13□□□□□ -1.43
RFX1P22670 AC006145.1-201ENST00000439234 2651 ntTSL 2 BASIC6.13□□□□□ -1.43
RFX1P22670 ST7-AS2-206ENST00000456577 1351 ntTSL 1 (best) BASIC6.13□□□□□ -1.43
RFX1P22670 SAMMSON-213ENST00000641336 1521 ntBASIC6.13□□□□□ -1.43
RFX1P22670 LINC01963-201ENST00000562038 3148 ntBASIC6.13□□□□□ -1.43
RFX1P22670 AC022893.2-201ENST00000564832 3296 ntBASIC6.13□□□□□ -1.43
RFX1P22670 AL442639.1-201ENST00000625030 1899 ntBASIC6.13□□□□□ -1.43
RFX1P22670 ASNSP1-201ENST00000518311 1939 ntBASIC6.13□□□□□ -1.43
RFX1P22670 SP110-202ENST00000258382 2080 ntTSL 1 (best) BASIC6.13□□□□□ -1.43
Retrieved 100 of 98,524 protein–RNA pairs in 129.4 ms