Protein–RNA interactions for Protein: P09429

HMGB1, High mobility group protein B1, humanhuman

Known RBP Predictions only

Length 215 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P09429 TAS2R3-201ENST00000247879 1101 ntAPPRIS P1 BASIC5.11□□□□□ -1.59
HMGB1P09429 OR51F2-201ENST00000322110 993 ntAPPRIS ALT2 BASIC5.11□□□□□ -1.59
HMGB1P09429 MT-ND2-201ENST00000361453 1042 ntAPPRIS P1 BASIC5.11□□□□□ -1.59
HMGB1P09429 RNU5E-8P-201ENST00000363502 116 ntBASIC5.11□□□□□ -1.59
HMGB1P09429 SKINT1L-201ENST00000401057 817 ntBASIC5.11□□□□□ -1.59
HMGB1P09429 AL354726.1-201ENST00000411981 402 ntTSL 2 BASIC5.11□□□□□ -1.59
HMGB1P09429 AL590705.3-201ENST00000416066 474 ntTSL 1 (best) BASIC5.11□□□□□ -1.59
HMGB1P09429 EIF4EP1-201ENST00000422311 642 ntBASIC5.11□□□□□ -1.59
HMGB1P09429 RPS27AP7-201ENST00000422792 455 ntBASIC5.11□□□□□ -1.59
HMGB1P09429 ATP6V0E1P2-201ENST00000441771 245 ntBASIC5.11□□□□□ -1.59
HMGB1P09429 PHBP16-201ENST00000446318 950 ntBASIC5.11□□□□□ -1.59
HMGB1P09429 LINC01878-202ENST00000453965 405 ntTSL 3 BASIC5.11□□□□□ -1.59
HMGB1P09429 RN7SL98P-201ENST00000462271 300 ntBASIC5.11□□□□□ -1.59
HMGB1P09429 AC097478.1-202ENST00000508021 567 ntTSL 4 BASIC5.11□□□□□ -1.59
HMGB1P09429 GMPSP1-201ENST00000514075 579 ntBASIC5.11□□□□□ -1.59
HMGB1P09429 RNU6-798P-201ENST00000516912 103 ntBASIC5.11□□□□□ -1.59
HMGB1P09429 AC069113.2-201ENST00000517735 359 ntTSL 3 BASIC5.11□□□□□ -1.59
HMGB1P09429 AP000756.1-201ENST00000532606 679 ntTSL 2 BASIC5.11□□□□□ -1.59
HMGB1P09429 AL354943.1-201ENST00000572103 781 ntBASIC5.11□□□□□ -1.59
HMGB1P09429 MIR4715-201ENST00000584117 79 ntBASIC5.11□□□□□ -1.59
HMGB1P09429 AC093227.2-201ENST00000589357 285 ntBASIC5.11□□□□□ -1.59
HMGB1P09429 LINC01905-206ENST00000593180 524 ntTSL 2 BASIC5.11□□□□□ -1.59
HMGB1P09429 AC007546.1-201ENST00000619452 559 ntBASIC5.11□□□□□ -1.59
HMGB1P09429 AL161637.1-201ENST00000622380 412 ntBASIC5.11□□□□□ -1.59
HMGB1P09429 OXR1-206ENST00000449762 2621 ntTSL 1 (best) BASIC5.11□□□□□ -1.59
HMGB1P09429 SYNE1-201ENST00000341594 26584 ntAPPRIS ALT2 TSL 5 BASIC5.11□□□□□ -1.59
HMGB1P09429 ACSM3-201ENST00000289416 2845 ntAPPRIS P1 TSL 1 (best) BASIC5.11□□□□□ -1.59
HMGB1P09429 MTRNR2L13-201ENST00000604093 1445 ntAPPRIS P1 BASIC5.11□□□□□ -1.59
HMGB1P09429 CACNB4-257ENST00000637547 7658 ntTSL 5 BASIC5.11□□□□□ -1.59
HMGB1P09429 GABRG2-215ENST00000639213 9960 ntTSL 1 (best) BASIC5.11□□□□□ -1.59
HMGB1P09429 NFAT5-203ENST00000393742 13067 ntAPPRIS ALT1 TSL 1 (best) BASIC5.1□□□□□ -1.59
HMGB1P09429 CLEC7A-202ENST00000304084 1130 ntAPPRIS ALT1 TSL 1 (best) BASIC5.1□□□□□ -1.59
HMGB1P09429 AL672167.1-206ENST00000356293 943 ntBASIC5.1□□□□□ -1.59
HMGB1P09429 PREPL-205ENST00000409411 4725 ntTSL 1 (best) BASIC5.1□□□□□ -1.59
HMGB1P09429 RNU6-516P-201ENST00000411381 104 ntBASIC5.1□□□□□ -1.59
HMGB1P09429 AL024509.3-201ENST00000413898 745 ntTSL 1 (best) BASIC5.1□□□□□ -1.59
HMGB1P09429 RPS24P7-201ENST00000416921 246 ntBASIC5.1□□□□□ -1.59
HMGB1P09429 RPL22P18-201ENST00000417197 377 ntBASIC5.1□□□□□ -1.59
HMGB1P09429 AL161631.1-201ENST00000417933 486 ntBASIC5.1□□□□□ -1.59
HMGB1P09429 AC018630.2-202ENST00000422992 927 ntBASIC5.1□□□□□ -1.59
HMGB1P09429 AL353148.1-204ENST00000426752 477 ntTSL 5 BASIC5.1□□□□□ -1.59
HMGB1P09429 AC008850.1-201ENST00000427546 362 ntBASIC5.1□□□□□ -1.59
HMGB1P09429 AL359878.2-201ENST00000435531 407 ntTSL 3 BASIC5.1□□□□□ -1.59
HMGB1P09429 AC091862.1-201ENST00000438016 1100 ntBASIC5.1□□□□□ -1.59
HMGB1P09429 AC108734.1-201ENST00000439549 399 ntBASIC5.1□□□□□ -1.59
HMGB1P09429 AC079354.3-201ENST00000447111 311 ntTSL 2 BASIC5.1□□□□□ -1.59
HMGB1P09429 AP000542.1-201ENST00000448473 371 ntBASIC5.1□□□□□ -1.59
HMGB1P09429 GSTA9P-202ENST00000448991 521 ntTSL 3 BASIC5.1□□□□□ -1.59
HMGB1P09429 AC140076.1-201ENST00000449897 361 ntBASIC5.1□□□□□ -1.59
HMGB1P09429 RPL23AP81-201ENST00000455252 467 ntBASIC5.1□□□□□ -1.59
HMGB1P09429 AC123023.1-201ENST00000455974 555 ntTSL 4 BASIC5.1□□□□□ -1.59
HMGB1P09429 AC079804.1-201ENST00000461922 436 ntBASIC5.1□□□□□ -1.59
HMGB1P09429 AC093809.1-201ENST00000509155 340 ntBASIC5.1□□□□□ -1.59
HMGB1P09429 SNORA31.1-201ENST00000515993 133 ntBASIC5.1□□□□□ -1.59
HMGB1P09429 SNORA31.5-201ENST00000516190 133 ntBASIC5.1□□□□□ -1.59
HMGB1P09429 AC133634.1-201ENST00000517695 566 ntTSL 3 BASIC5.1□□□□□ -1.59
HMGB1P09429 AP001372.4-201ENST00000524889 472 ntBASIC5.1□□□□□ -1.59
HMGB1P09429 AP002993.1-201ENST00000538624 210 ntTSL 5 BASIC5.1□□□□□ -1.59
HMGB1P09429 AC023050.2-201ENST00000544968 387 ntBASIC5.1□□□□□ -1.59
HMGB1P09429 MIR4443-201ENST00000585052 53 ntBASIC5.1□□□□□ -1.59
HMGB1P09429 AC234772.3-201ENST00000602277 528 ntBASIC5.1□□□□□ -1.59
HMGB1P09429 AC072039.2-201ENST00000608883 439 ntBASIC5.1□□□□□ -1.59
HMGB1P09429 AC015813.4-201ENST00000610469 179 ntBASIC5.1□□□□□ -1.59
HMGB1P09429 AC024941.1-201ENST00000612250 334 ntBASIC5.1□□□□□ -1.59
HMGB1P09429 AL603758.1-201ENST00000618654 241 ntBASIC5.1□□□□□ -1.59
HMGB1P09429 THOC1-221ENST00000631280 2011 ntTSL 5 BASIC5.1□□□□□ -1.59
HMGB1P09429 OR4G2P-202ENST00000641004 1759 ntBASIC5.1□□□□□ -1.59
HMGB1P09429 AC099063.3-201ENST00000642066 185 ntBASIC5.1□□□□□ -1.59
HMGB1P09429 PCDH15-234ENST00000622048 6820 ntTSL 5 BASIC5.1□□□□□ -1.59
HMGB1P09429 CEP295-201ENST00000325212 8057 ntAPPRIS P2 TSL 2 BASIC5.1□□□□□ -1.59
HMGB1P09429 SMC6-203ENST00000402989 3729 ntAPPRIS P1 TSL 2 BASIC5.09□□□□□ -1.59
HMGB1P09429 SCOC-202ENST00000394201 1795 ntAPPRIS ALT1 TSL 1 (best) BASIC5.09□□□□□ -1.59
HMGB1P09429 MGA-201ENST00000219905 12042 ntAPPRIS P4 TSL 5 BASIC5.09□□□□□ -1.59
HMGB1P09429 LMNTD1-204ENST00000458174 1677 ntAPPRIS ALT2 TSL 2 BASIC5.09□□□□□ -1.59
HMGB1P09429 DLG1-217ENST00000452595 3053 ntTSL 2 BASIC5.09□□□□□ -1.59
HMGB1P09429 ZNF542P-204ENST00000482727 1305 ntBASIC5.09□□□□□ -1.59
HMGB1P09429 RPL21P132-201ENST00000331267 462 ntBASIC5.09□□□□□ -1.59
HMGB1P09429 RNU6-931P-201ENST00000363850 107 ntBASIC5.09□□□□□ -1.59
HMGB1P09429 LY6G5C-210ENST00000383237 674 ntAPPRIS P2 TSL 1 (best) BASIC5.09□□□□□ -1.59
HMGB1P09429 RNU6-253P-201ENST00000384730 105 ntBASIC5.09□□□□□ -1.59
HMGB1P09429 ELOCP19-201ENST00000411919 318 ntBASIC5.09□□□□□ -1.59
HMGB1P09429 AC018742.1-201ENST00000435237 488 ntTSL 3 BASIC5.09□□□□□ -1.59
HMGB1P09429 AL353613.1-201ENST00000443163 530 ntTSL 3 BASIC5.09□□□□□ -1.59
HMGB1P09429 AL139383.1-203ENST00000445227 420 ntTSL 3 BASIC5.09□□□□□ -1.59
HMGB1P09429 AC007953.1-201ENST00000450500 560 ntTSL 4 BASIC5.09□□□□□ -1.59
HMGB1P09429 AC034222.1-201ENST00000494052 532 ntBASIC5.09□□□□□ -1.59
HMGB1P09429 AC018752.1-201ENST00000507813 206 ntTSL 5 BASIC5.09□□□□□ -1.59
HMGB1P09429 MTND4LP22-201ENST00000508209 276 ntBASIC5.09□□□□□ -1.59
HMGB1P09429 LINC02231-201ENST00000510459 447 ntTSL 3 BASIC5.09□□□□□ -1.59
HMGB1P09429 KCTD9P2-201ENST00000512203 1013 ntBASIC5.09□□□□□ -1.59
HMGB1P09429 AC108517.1-201ENST00000512546 327 ntTSL 3 BASIC5.09□□□□□ -1.59
HMGB1P09429 SNORD59.2-201ENST00000516873 68 ntBASIC5.09□□□□□ -1.59
HMGB1P09429 IGLVIV-65-201ENST00000517313 360 ntBASIC5.09□□□□□ -1.59
HMGB1P09429 HMGN1P28-201ENST00000521340 364 ntBASIC5.09□□□□□ -1.59
HMGB1P09429 AL133271.1-201ENST00000538229 291 ntBASIC5.09□□□□□ -1.59
HMGB1P09429 AC125603.1-201ENST00000552718 366 ntTSL 3 BASIC5.09□□□□□ -1.59
HMGB1P09429 LINC01481-201ENST00000552998 629 ntTSL 2 BASIC5.09□□□□□ -1.59
HMGB1P09429 DNAL1-206ENST00000554871 632 ntTSL 1 (best) BASIC5.09□□□□□ -1.59
HMGB1P09429 LINC02311-202ENST00000556819 477 ntTSL 3 BASIC5.09□□□□□ -1.59
HMGB1P09429 CYP4A43P-201ENST00000568156 121 ntBASIC5.09□□□□□ -1.59
Retrieved 100 of 98,524 protein–RNA pairs in 137.3 ms