Protein–RNA interactions for Protein: O95484

CLDN9, Claudin-9, humanhuman

Predictions only

Length 217 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLDN9O95484 GPR18-203ENST00000397473 1660 ntAPPRIS P1 TSL 1 (best) BASIC3.19□□□□□ -1.9
CLDN9O95484 CPB2-202ENST00000439329 1655 ntTSL 5 BASIC3.19□□□□□ -1.9
CLDN9O95484 TAS2R14-202ENST00000537503 1858 ntAPPRIS P1 BASIC3.19□□□□□ -1.9
CLDN9O95484 OR6C1-202ENST00000642104 2055 ntAPPRIS P1 BASIC3.19□□□□□ -1.9
CLDN9O95484 MARCH7-202ENST00000409175 2402 ntAPPRIS P1 TSL 2 BASIC3.19□□□□□ -1.9
CLDN9O95484 FAP-201ENST00000188790 2780 ntAPPRIS P2 TSL 1 (best) BASIC3.18□□□□□ -1.9
CLDN9O95484 OFD1P5Y-201ENST00000447585 2590 ntBASIC3.18□□□□□ -1.9
CLDN9O95484 CLOCK-201ENST00000309964 10304 ntAPPRIS P1 TSL 1 (best) BASIC3.18□□□□□ -1.9
CLDN9O95484 THEMIS-201ENST00000368248 3866 ntAPPRIS P3 TSL 1 (best) BASIC3.18□□□□□ -1.9
CLDN9O95484 CHD9-213ENST00000564845 11504 ntAPPRIS P1 TSL 1 (best) BASIC3.18□□□□□ -1.9
CLDN9O95484 NUP35-203ENST00000409798 1470 ntTSL 2 BASIC3.18□□□□□ -1.9
CLDN9O95484 SYNE1-212ENST00000423061 27436 ntAPPRIS ALT2 TSL 1 (best) BASIC3.18□□□□□ -1.9
CLDN9O95484 RNU1-70P-201ENST00000362618 164 ntBASIC3.18□□□□□ -1.9
CLDN9O95484 NFIB-202ENST00000380924 840 ntTSL 5 BASIC3.18□□□□□ -1.9
CLDN9O95484 RNU6-730P-201ENST00000383954 104 ntBASIC3.18□□□□□ -1.9
CLDN9O95484 SNORD116-23-201ENST00000384645 92 ntBASIC3.18□□□□□ -1.9
CLDN9O95484 RNU6-821P-201ENST00000390995 107 ntBASIC3.18□□□□□ -1.9
CLDN9O95484 RNA5SP129-201ENST00000410276 118 ntBASIC3.18□□□□□ -1.9
CLDN9O95484 RNU6-575P-201ENST00000411326 105 ntBASIC3.18□□□□□ -1.9
CLDN9O95484 AC092638.1-201ENST00000411966 1275 ntBASIC3.18□□□□□ -1.9
CLDN9O95484 FCF1P2-201ENST00000415284 583 ntBASIC3.18□□□□□ -1.9
CLDN9O95484 KRR1P1-201ENST00000419430 803 ntBASIC3.18□□□□□ -1.9
CLDN9O95484 AL590432.1-201ENST00000420071 566 ntTSL 2 BASIC3.18□□□□□ -1.9
CLDN9O95484 AL139254.1-201ENST00000421114 376 ntTSL 3 BASIC3.18□□□□□ -1.9
CLDN9O95484 LINC01473-202ENST00000427108 695 ntTSL 5 BASIC3.18□□□□□ -1.9
CLDN9O95484 ATP6V0E1P4-201ENST00000427294 242 ntBASIC3.18□□□□□ -1.9
CLDN9O95484 BX890604.2-201ENST00000427883 474 ntBASIC3.18□□□□□ -1.9
CLDN9O95484 OFD1P12Y-201ENST00000427963 1207 ntBASIC3.18□□□□□ -1.9
CLDN9O95484 OFD1P13Y-201ENST00000431179 1232 ntBASIC3.18□□□□□ -1.9
CLDN9O95484 AL590999.1-206ENST00000437947 436 ntTSL 3 BASIC3.18□□□□□ -1.9
CLDN9O95484 RPL23AP16-201ENST00000441715 421 ntBASIC3.18□□□□□ -1.9
CLDN9O95484 ATP5C1P1-201ENST00000441945 895 ntBASIC3.18□□□□□ -1.9
CLDN9O95484 AL035701.1-201ENST00000444038 462 ntTSL 3 BASIC3.18□□□□□ -1.9
CLDN9O95484 AC005008.2-202ENST00000447776 439 ntTSL 3 BASIC3.18□□□□□ -1.9
CLDN9O95484 AC011196.1-201ENST00000451816 595 ntTSL 2 BASIC3.18□□□□□ -1.9
CLDN9O95484 NECAP1P2-201ENST00000455668 727 ntBASIC3.18□□□□□ -1.9
CLDN9O95484 AC012081.1-201ENST00000462382 477 ntTSL 3 BASIC3.18□□□□□ -1.9
CLDN9O95484 AC093663.1-201ENST00000497190 394 ntBASIC3.18□□□□□ -1.9
CLDN9O95484 LINC01861-201ENST00000509568 537 ntTSL 4 BASIC3.18□□□□□ -1.9
CLDN9O95484 AC004062.1-201ENST00000509926 645 ntBASIC3.18□□□□□ -1.9
CLDN9O95484 RNU5A-7P-201ENST00000515979 116 ntBASIC3.18□□□□□ -1.9
CLDN9O95484 RNA5SP135-201ENST00000517019 125 ntBASIC3.18□□□□□ -1.9
CLDN9O95484 AC013799.1-201ENST00000531157 348 ntTSL 2 BASIC3.18□□□□□ -1.9
CLDN9O95484 OR56A5-202ENST00000532411 942 ntAPPRIS P1 BASIC3.18□□□□□ -1.9
CLDN9O95484 AC087623.1-201ENST00000533301 377 ntTSL 3 BASIC3.18□□□□□ -1.9
CLDN9O95484 AP000619.3-201ENST00000535634 1127 ntBASIC3.18□□□□□ -1.9
CLDN9O95484 LINC00508-201ENST00000538901 194 ntTSL 5 BASIC3.18□□□□□ -1.9
CLDN9O95484 AC120045.1-201ENST00000563502 251 ntTSL 3 BASIC3.18□□□□□ -1.9
CLDN9O95484 AC139426.2-201ENST00000568289 251 ntTSL 3 BASIC3.18□□□□□ -1.9
CLDN9O95484 AP001542.2-201ENST00000593141 364 ntBASIC3.18□□□□□ -1.9
CLDN9O95484 AC100781.1-202ENST00000597906 463 ntTSL 5 BASIC3.18□□□□□ -1.9
CLDN9O95484 VN1R92P-201ENST00000598511 928 ntBASIC3.18□□□□□ -1.9
CLDN9O95484 AC128687.1-201ENST00000605304 619 ntBASIC3.18□□□□□ -1.9
CLDN9O95484 U3.45-201ENST00000607547 219 ntBASIC3.18□□□□□ -1.9
CLDN9O95484 AC006329.2-201ENST00000611491 394 ntBASIC3.18□□□□□ -1.9
CLDN9O95484 AL354696.2-202ENST00000620300 613 ntTSL 2 BASIC3.18□□□□□ -1.9
CLDN9O95484 SOX2-OT-255ENST00000630150 649 ntTSL 5 BASIC3.18□□□□□ -1.9
CLDN9O95484 DAZ4-201ENST00000382296 2048 ntAPPRIS P5 TSL 5 BASIC3.18□□□□□ -1.9
CLDN9O95484 AC007256.1-201ENST00000392253 2765 ntBASIC3.18□□□□□ -1.9
CLDN9O95484 FAM214A-216ENST00000619572 3548 ntAPPRIS P1 TSL 1 (best) BASIC3.18□□□□□ -1.9
CLDN9O95484 ROCK1P1-203ENST00000608049 2457 ntTSL 1 (best) BASIC3.18□□□□□ -1.9
CLDN9O95484 AC004925.1-201ENST00000624256 2706 ntBASIC3.17□□□□□ -1.9
CLDN9O95484 BCLAF1P1-201ENST00000505813 2752 ntBASIC3.17□□□□□ -1.9
CLDN9O95484 RPL7P26-201ENST00000333817 754 ntBASIC3.17□□□□□ -1.9
CLDN9O95484 RNU5B-1-201ENST00000363286 116 ntBASIC3.17□□□□□ -1.9
CLDN9O95484 SNORD56.3-201ENST00000363507 71 ntBASIC3.17□□□□□ -1.9
CLDN9O95484 RNA5SP50-201ENST00000363731 107 ntBASIC3.17□□□□□ -1.9
CLDN9O95484 SNORD82-201ENST00000365530 70 ntBASIC3.17□□□□□ -1.9
CLDN9O95484 AC234772.1-201ENST00000377927 937 ntBASIC3.17□□□□□ -1.9
CLDN9O95484 RPL23AP47-201ENST00000408017 460 ntBASIC3.17□□□□□ -1.9
CLDN9O95484 LINC01201-201ENST00000412420 294 ntTSL 3 BASIC3.17□□□□□ -1.9
CLDN9O95484 AL357500.1-201ENST00000413004 279 ntTSL 3 BASIC3.17□□□□□ -1.9
CLDN9O95484 AC019070.1-201ENST00000415008 1024 ntBASIC3.17□□□□□ -1.9
CLDN9O95484 MTCO3P12-201ENST00000416718 547 ntBASIC3.17□□□□□ -1.9
CLDN9O95484 Z97206.2-201ENST00000423489 589 ntTSL 3 BASIC3.17□□□□□ -1.9
CLDN9O95484 AP001599.1-201ENST00000426771 361 ntTSL 3 BASIC3.17□□□□□ -1.9
CLDN9O95484 AL355303.1-201ENST00000428920 680 ntTSL 3 BASIC3.17□□□□□ -1.9
CLDN9O95484 AC005345.1-201ENST00000431868 217 ntBASIC3.17□□□□□ -1.9
CLDN9O95484 AP000855.1-201ENST00000433210 636 ntTSL 2 BASIC3.17□□□□□ -1.9
CLDN9O95484 LINC00377-201ENST00000456588 657 ntTSL 5 BASIC3.17□□□□□ -1.9
CLDN9O95484 MTCO3P2-201ENST00000457365 171 ntBASIC3.17□□□□□ -1.9
CLDN9O95484 AC006148.2-201ENST00000467017 650 ntTSL 2 BASIC3.17□□□□□ -1.9
CLDN9O95484 BCL2L15-204ENST00000471267 267 ntTSL 1 (best) BASIC3.17□□□□□ -1.9
CLDN9O95484 RPS17P11-201ENST00000474297 293 ntBASIC3.17□□□□□ -1.9
CLDN9O95484 DNAJC12-205ENST00000483798 769 ntTSL 3 BASIC3.17□□□□□ -1.9
CLDN9O95484 LINC00492-201ENST00000504436 593 ntTSL 3 BASIC3.17□□□□□ -1.9
CLDN9O95484 PAIP2-205ENST00000510080 858 ntAPPRIS P1 TSL 1 (best) BASIC3.17□□□□□ -1.9
CLDN9O95484 MTCO2P32-201ENST00000514865 403 ntBASIC3.17□□□□□ -1.9
CLDN9O95484 OR4R2P-201ENST00000530815 597 ntBASIC3.17□□□□□ -1.9
CLDN9O95484 LINC01495-201ENST00000532380 421 ntTSL 2 BASIC3.17□□□□□ -1.9
CLDN9O95484 CCNG2P1-201ENST00000549521 1000 ntBASIC3.17□□□□□ -1.9
CLDN9O95484 ZNF971P-201ENST00000562068 1249 ntBASIC3.17□□□□□ -1.9
CLDN9O95484 AC010735.1-201ENST00000567305 1026 ntBASIC3.17□□□□□ -1.9
CLDN9O95484 MIR4276-201ENST00000584832 70 ntBASIC3.17□□□□□ -1.9
CLDN9O95484 AC104365.3-201ENST00000587011 625 ntTSL 5 BASIC3.17□□□□□ -1.9
CLDN9O95484 AC007953.2-201ENST00000603299 193 ntTSL 5 BASIC3.17□□□□□ -1.9
CLDN9O95484 MTATP6P2-201ENST00000603319 678 ntBASIC3.17□□□□□ -1.9
CLDN9O95484 AP000238.1-201ENST00000608759 426 ntBASIC3.17□□□□□ -1.9
CLDN9O95484 AC084757.4-201ENST00000616350 526 ntBASIC3.17□□□□□ -1.9
CLDN9O95484 AL355365.1-201ENST00000616480 294 ntBASIC3.17□□□□□ -1.9
Retrieved 100 of 98,524 protein–RNA pairs in 92.5 ms