Protein–RNA interactions for Protein: Q9Y6I4

USP3, Ubiquitin carboxyl-terminal hydrolase 3, humanhuman

Predictions only

Length 520 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP3Q9Y6I4 MRPS21P7-201ENST00000566937 238 ntBASIC5.9□□□□□ -1.46
USP3Q9Y6I4 AC005899.2-201ENST00000584353 90 ntBASIC5.9□□□□□ -1.46
USP3Q9Y6I4 NF1P5-201ENST00000588287 448 ntBASIC5.9□□□□□ -1.46
USP3Q9Y6I4 AL670379.6-201ENST00000603753 252 ntBASIC5.9□□□□□ -1.46
USP3Q9Y6I4 AL138889.2-201ENST00000603883 242 ntBASIC5.9□□□□□ -1.46
USP3Q9Y6I4 AC008162.1-201ENST00000604718 254 ntBASIC5.9□□□□□ -1.46
USP3Q9Y6I4 AL670379.1-201ENST00000604752 252 ntBASIC5.9□□□□□ -1.46
USP3Q9Y6I4 AL670379.5-201ENST00000605253 252 ntBASIC5.9□□□□□ -1.46
USP3Q9Y6I4 AL670379.8-201ENST00000605353 252 ntBASIC5.9□□□□□ -1.46
USP3Q9Y6I4 AL670379.7-201ENST00000605823 252 ntBASIC5.9□□□□□ -1.46
USP3Q9Y6I4 AL365434.2-201ENST00000607979 234 ntBASIC5.9□□□□□ -1.46
USP3Q9Y6I4 FAM157A-202ENST00000615155 405 ntBASIC5.9□□□□□ -1.46
USP3Q9Y6I4 AC025574.2-201ENST00000615621 514 ntBASIC5.9□□□□□ -1.46
USP3Q9Y6I4 AC123768.4-201ENST00000616244 701 ntBASIC5.9□□□□□ -1.46
USP3Q9Y6I4 U2.1-201ENST00000618978 145 ntBASIC5.9□□□□□ -1.46
USP3Q9Y6I4 HOTTIP_3.1-201ENST00000619957 337 ntBASIC5.9□□□□□ -1.46
USP3Q9Y6I4 AL136313.1-201ENST00000624804 202 ntBASIC5.9□□□□□ -1.46
USP3Q9Y6I4 CCR5-201ENST00000292303 3450 ntAPPRIS P1 TSL 1 (best) BASIC5.9□□□□□ -1.46
USP3Q9Y6I4 DROSHA-212ENST00000511367 5305 ntAPPRIS P4 TSL 1 (best) BASIC5.9□□□□□ -1.46
USP3Q9Y6I4 MAP9-208ENST00000515654 2044 ntTSL 5 BASIC5.9□□□□□ -1.47
USP3Q9Y6I4 AC037459.2-201ENST00000514980 4076 ntTSL 2 BASIC5.9□□□□□ -1.47
USP3Q9Y6I4 ZCCHC6-201ENST00000277141 5724 ntTSL 2 BASIC5.9□□□□□ -1.47
USP3Q9Y6I4 PDE4D-216ENST00000507116 3350 ntAPPRIS P1 TSL 1 (best) BASIC5.9□□□□□ -1.47
USP3Q9Y6I4 ANKRD31-203ENST00000506364 6207 ntAPPRIS ALT2 TSL 5 BASIC5.9□□□□□ -1.47
USP3Q9Y6I4 PCDH18-201ENST00000344876 5906 ntAPPRIS P3 TSL 1 (best) BASIC5.9□□□□□ -1.47
USP3Q9Y6I4 LMO3-225ENST00000541295 3498 ntTSL 2 BASIC5.9□□□□□ -1.47
USP3Q9Y6I4 NSF-206ENST00000575068 2667 ntTSL 2 BASIC5.9□□□□□ -1.47
USP3Q9Y6I4 WDR64-201ENST00000366552 4371 ntAPPRIS P1 TSL 5 BASIC5.9□□□□□ -1.47
USP3Q9Y6I4 MAPK10-261ENST00000641050 3109 ntBASIC5.9□□□□□ -1.47
USP3Q9Y6I4 PANDAR-201ENST00000629595 1506 ntBASIC5.89□□□□□ -1.47
USP3Q9Y6I4 PLCXD3-202ENST00000377801 7704 ntAPPRIS P1 TSL 1 (best) BASIC5.89□□□□□ -1.47
USP3Q9Y6I4 ATF7IP2-201ENST00000324570 3396 ntTSL 5 BASIC5.89□□□□□ -1.47
USP3Q9Y6I4 NDUFS1-207ENST00000455934 3361 ntTSL 2 BASIC5.89□□□□□ -1.47
USP3Q9Y6I4 MED12L-206ENST00000474524 10744 ntAPPRIS P2 TSL 1 (best) BASIC5.89□□□□□ -1.47
USP3Q9Y6I4 CLDN12-203ENST00000394605 3488 ntAPPRIS P1 TSL 2 BASIC5.89□□□□□ -1.47
USP3Q9Y6I4 CD86-204ENST00000469710 1604 ntTSL 2 BASIC5.89□□□□□ -1.47
USP3Q9Y6I4 LINC01021-204ENST00000512067 1610 ntTSL 1 (best) BASIC5.89□□□□□ -1.47
USP3Q9Y6I4 DCN-202ENST00000393155 2133 ntAPPRIS P1 TSL 1 (best) BASIC5.89□□□□□ -1.47
USP3Q9Y6I4 MSANTD2-204ENST00000526629 3086 ntTSL 1 (best) BASIC5.89□□□□□ -1.47
USP3Q9Y6I4 MARCH7-201ENST00000259050 5922 ntAPPRIS P1 TSL 1 (best) BASIC5.89□□□□□ -1.47
USP3Q9Y6I4 AC123769.1-201ENST00000530992 3192 ntBASIC5.89□□□□□ -1.47
USP3Q9Y6I4 MDN1-205ENST00000629399 17400 ntAPPRIS P1 TSL 1 (best) BASIC5.89□□□□□ -1.47
USP3Q9Y6I4 SPHKAP-201ENST00000344657 6804 ntAPPRIS P3 TSL 1 (best) BASIC5.89□□□□□ -1.47
USP3Q9Y6I4 AL161668.1-201ENST00000320322 358 ntTSL 1 (best) BASIC5.89□□□□□ -1.47
USP3Q9Y6I4 AC106870.1-201ENST00000359823 200 ntTSL 3 BASIC5.89□□□□□ -1.47
USP3Q9Y6I4 RNA5SP132-201ENST00000364725 118 ntBASIC5.89□□□□□ -1.47
USP3Q9Y6I4 RN7SKP124-201ENST00000364730 341 ntBASIC5.89□□□□□ -1.47
USP3Q9Y6I4 TEX35-205ENST00000367643 802 ntAPPRIS ALT2 TSL 2 BASIC5.89□□□□□ -1.47
USP3Q9Y6I4 RNU6-432P-201ENST00000384196 109 ntBASIC5.89□□□□□ -1.47
USP3Q9Y6I4 Y_RNA.496-201ENST00000384444 101 ntBASIC5.89□□□□□ -1.47
USP3Q9Y6I4 Y_RNA.645-201ENST00000391229 102 ntBASIC5.89□□□□□ -1.47
USP3Q9Y6I4 RNU6ATAC23P-201ENST00000408448 123 ntBASIC5.89□□□□□ -1.47
USP3Q9Y6I4 RPLP0P7-201ENST00000416050 667 ntBASIC5.89□□□□□ -1.47
USP3Q9Y6I4 MYCBP2-AS1-201ENST00000422231 519 ntTSL 3 BASIC5.89□□□□□ -1.47
USP3Q9Y6I4 USMG5P1-201ENST00000425964 177 ntBASIC5.89□□□□□ -1.47
USP3Q9Y6I4 AL392089.1-202ENST00000444793 449 ntTSL 2 BASIC5.89□□□□□ -1.47
USP3Q9Y6I4 snoU13.7-201ENST00000459220 104 ntBASIC5.89□□□□□ -1.47
USP3Q9Y6I4 DYNLL1P5-201ENST00000467158 270 ntBASIC5.89□□□□□ -1.47
USP3Q9Y6I4 RN7SL432P-201ENST00000484057 298 ntBASIC5.89□□□□□ -1.47
USP3Q9Y6I4 LINC02469-201ENST00000506460 741 ntTSL 3 BASIC5.89□□□□□ -1.47
USP3Q9Y6I4 RNU6-699P-201ENST00000517081 110 ntBASIC5.89□□□□□ -1.47
USP3Q9Y6I4 AC018442.3-201ENST00000523025 183 ntBASIC5.89□□□□□ -1.47
USP3Q9Y6I4 LDHC-203ENST00000535809 757 ntTSL 5 BASIC5.89□□□□□ -1.47
USP3Q9Y6I4 LDHC-205ENST00000537486 583 ntTSL 5 BASIC5.89□□□□□ -1.47
USP3Q9Y6I4 ZNF84-212ENST00000542874 540 ntTSL 5 BASIC5.89□□□□□ -1.47
USP3Q9Y6I4 LINC02284-202ENST00000560924 566 ntTSL 4 BASIC5.89□□□□□ -1.47
USP3Q9Y6I4 LINC02165-201ENST00000563061 443 ntTSL 3 BASIC5.89□□□□□ -1.47
USP3Q9Y6I4 AC090617.5-201ENST00000571815 528 ntTSL 3 BASIC5.89□□□□□ -1.47
USP3Q9Y6I4 RN7SL753P-201ENST00000581238 290 ntBASIC5.89□□□□□ -1.47
USP3Q9Y6I4 AC018889.1-201ENST00000605372 397 ntBASIC5.89□□□□□ -1.47
USP3Q9Y6I4 AC009570.1-201ENST00000609599 745 ntBASIC5.89□□□□□ -1.47
USP3Q9Y6I4 DLX6-AS1_2.1-201ENST00000613701 207 ntBASIC5.89□□□□□ -1.47
USP3Q9Y6I4 PXT1-202ENST00000619547 619 ntAPPRIS ALT2 TSL 1 (best) BASIC5.89□□□□□ -1.47
USP3Q9Y6I4 HOXA11-AS1_4.1-201ENST00000620901 233 ntBASIC5.89□□□□□ -1.47
USP3Q9Y6I4 SNHG5-214ENST00000623001 598 ntTSL 2 BASIC5.89□□□□□ -1.47
USP3Q9Y6I4 AC067931.1-201ENST00000624190 671 ntBASIC5.89□□□□□ -1.47
USP3Q9Y6I4 SAMMSON-210ENST00000641260 1308 ntBASIC5.89□□□□□ -1.47
USP3Q9Y6I4 ADH4-207ENST00000505590 1400 ntTSL 5 BASIC5.89□□□□□ -1.47
USP3Q9Y6I4 AL606537.1-201ENST00000607258 2011 ntBASIC5.89□□□□□ -1.47
USP3Q9Y6I4 MSL3P1-202ENST00000440028 1468 ntBASIC5.89□□□□□ -1.47
USP3Q9Y6I4 AC067956.1-201ENST00000414512 2062 ntTSL 1 (best) BASIC5.89□□□□□ -1.47
USP3Q9Y6I4 AL022344.1-201ENST00000439913 3965 ntTSL 1 (best) BASIC5.89□□□□□ -1.47
USP3Q9Y6I4 EDA2R-202ENST00000374719 3418 ntAPPRIS P3 TSL 1 (best) BASIC5.89□□□□□ -1.47
USP3Q9Y6I4 DLG2-207ENST00000398309 7890 ntTSL 1 (best) BASIC5.88□□□□□ -1.47
USP3Q9Y6I4 ZNF107-201ENST00000344930 5174 ntTSL 1 (best) BASIC5.88□□□□□ -1.47
USP3Q9Y6I4 AC083899.1-201ENST00000454465 3819 ntBASIC5.88□□□□□ -1.47
USP3Q9Y6I4 FRK-201ENST00000606080 13230 ntAPPRIS P1 TSL 1 (best) BASIC5.88□□□□□ -1.47
USP3Q9Y6I4 Z95114.1-201ENST00000624264 14574 ntBASIC5.88□□□□□ -1.47
USP3Q9Y6I4 SIAH1-202ENST00000380006 3352 ntAPPRIS P3 BASIC5.88□□□□□ -1.47
USP3Q9Y6I4 MOSPD2-201ENST00000380492 4163 ntAPPRIS P1 TSL 1 (best) BASIC5.88□□□□□ -1.47
USP3Q9Y6I4 IL1RL1-201ENST00000233954 2058 ntAPPRIS P1 TSL 1 (best) BASIC5.88□□□□□ -1.47
USP3Q9Y6I4 TXK-201ENST00000264316 2914 ntAPPRIS P1 TSL 1 (best) BASIC5.88□□□□□ -1.47
USP3Q9Y6I4 XIAPP3-201ENST00000312918 795 ntBASIC5.88□□□□□ -1.47
USP3Q9Y6I4 RNU6-874P-201ENST00000362390 105 ntBASIC5.88□□□□□ -1.47
USP3Q9Y6I4 RNA5SP326-201ENST00000363209 110 ntBASIC5.88□□□□□ -1.47
USP3Q9Y6I4 RNA5SP391-201ENST00000363456 119 ntBASIC5.88□□□□□ -1.47
USP3Q9Y6I4 U3.25-201ENST00000391209 220 ntBASIC5.88□□□□□ -1.47
USP3Q9Y6I4 AC005042.1-201ENST00000393397 800 ntBASIC5.88□□□□□ -1.47
USP3Q9Y6I4 Y_RNA.594-201ENST00000410373 140 ntBASIC5.88□□□□□ -1.47
USP3Q9Y6I4 RN7SKP17-201ENST00000411242 351 ntBASIC5.88□□□□□ -1.47
Retrieved 100 of 98,524 protein–RNA pairs in 145.2 ms