Protein–RNA interactions for Protein: Q9Y261

FOXA2, Hepatocyte nuclear factor 3-beta, humanhuman

Predicted RBP Predictions only

Length 457 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA2Q9Y261 AC010198.2-201ENST00000550612 259 ntBASIC3.27□□□□□ -1.89
FOXA2Q9Y261 LINC02286-201ENST00000552425 285 ntTSL 2 BASIC3.27□□□□□ -1.89
FOXA2Q9Y261 BNIP3P5-201ENST00000562290 498 ntBASIC3.27□□□□□ -1.89
FOXA2Q9Y261 AC018371.1-201ENST00000584560 640 ntTSL 3 BASIC3.27□□□□□ -1.89
FOXA2Q9Y261 MIR5684-201ENST00000585074 65 ntBASIC3.27□□□□□ -1.89
FOXA2Q9Y261 AC244505.7-201ENST00000599675 272 ntBASIC3.27□□□□□ -1.89
FOXA2Q9Y261 AL590099.1-201ENST00000615276 138 ntBASIC3.27□□□□□ -1.89
FOXA2Q9Y261 MIR8058-201ENST00000615737 89 ntBASIC3.27□□□□□ -1.89
FOXA2Q9Y261 AP001002.2-201ENST00000625137 386 ntBASIC3.27□□□□□ -1.89
FOXA2Q9Y261 OR10AG1-202ENST00000641071 2807 ntAPPRIS P1 BASIC3.27□□□□□ -1.89
FOXA2Q9Y261 PEX3-201ENST00000367591 1969 ntAPPRIS P1 TSL 1 (best) BASIC3.27□□□□□ -1.89
FOXA2Q9Y261 C6orf10-203ENST00000442822 1696 ntAPPRIS ALT2 TSL 1 (best) BASIC3.27□□□□□ -1.89
FOXA2Q9Y261 POLR2B-201ENST00000314595 3748 ntAPPRIS P1 TSL 1 (best) BASIC3.27□□□□□ -1.89
FOXA2Q9Y261 AL031985.3-201ENST00000565390 2449 ntBASIC3.27□□□□□ -1.89
FOXA2Q9Y261 TAB3P1-202ENST00000452645 1634 ntBASIC3.26□□□□□ -1.89
FOXA2Q9Y261 AC138915.3-201ENST00000562908 1389 ntBASIC3.26□□□□□ -1.89
FOXA2Q9Y261 AL050331.3-201ENST00000448740 2081 ntTSL 2 BASIC3.26□□□□□ -1.89
FOXA2Q9Y261 PPHLN1-208ENST00000449194 1583 ntAPPRIS ALT1 TSL 1 (best) BASIC3.26□□□□□ -1.89
FOXA2Q9Y261 RPL26-201ENST00000293842 524 ntAPPRIS P1 TSL 1 (best) BASIC3.26□□□□□ -1.89
FOXA2Q9Y261 AC126755.2-208ENST00000327792 462 ntBASIC3.26□□□□□ -1.89
FOXA2Q9Y261 AC138969.1-213ENST00000331436 462 ntBASIC3.26□□□□□ -1.89
FOXA2Q9Y261 SNORD35B-201ENST00000363660 87 ntBASIC3.26□□□□□ -1.89
FOXA2Q9Y261 MLLT3-201ENST00000380321 708 ntTSL 3 BASIC3.26□□□□□ -1.89
FOXA2Q9Y261 SNORA70C-201ENST00000384538 135 ntBASIC3.26□□□□□ -1.89
FOXA2Q9Y261 AL136372.1-201ENST00000403060 228 ntBASIC3.26□□□□□ -1.89
FOXA2Q9Y261 MTHFD2P2-201ENST00000407725 247 ntBASIC3.26□□□□□ -1.89
FOXA2Q9Y261 SUMO1-205ENST00000409205 534 ntTSL 2 BASIC3.26□□□□□ -1.89
FOXA2Q9Y261 SSR1P2-201ENST00000415208 787 ntBASIC3.26□□□□□ -1.89
FOXA2Q9Y261 LANCL1-AS1-201ENST00000416344 714 ntTSL 3 BASIC3.26□□□□□ -1.89
FOXA2Q9Y261 CCDC58P2-201ENST00000417131 366 ntBASIC3.26□□□□□ -1.89
FOXA2Q9Y261 ELOCP9-201ENST00000418624 239 ntBASIC3.26□□□□□ -1.89
FOXA2Q9Y261 AL589946.1-201ENST00000421465 420 ntTSL 3 BASIC3.26□□□□□ -1.89
FOXA2Q9Y261 AL390774.2-201ENST00000423942 788 ntTSL 3 BASIC3.26□□□□□ -1.89
FOXA2Q9Y261 HMGB3P5-201ENST00000428894 612 ntBASIC3.26□□□□□ -1.89
FOXA2Q9Y261 HCG2040054-201ENST00000435331 434 ntTSL 3 BASIC3.26□□□□□ -1.89
FOXA2Q9Y261 SLC8A1-AS1-205ENST00000435515 497 ntTSL 3 BASIC3.26□□□□□ -1.89
FOXA2Q9Y261 AC003092.1-202ENST00000438538 743 ntTSL 3 BASIC3.26□□□□□ -1.89
FOXA2Q9Y261 AF228730.2-201ENST00000438784 848 ntBASIC3.26□□□□□ -1.89
FOXA2Q9Y261 AC002381.1-201ENST00000447049 280 ntBASIC3.26□□□□□ -1.89
FOXA2Q9Y261 GAS5-223ENST00000452197 483 ntTSL 3 BASIC3.26□□□□□ -1.89
FOXA2Q9Y261 RPL38P1-201ENST00000460914 211 ntBASIC3.26□□□□□ -1.89
FOXA2Q9Y261 PTP4A2-203ENST00000470404 575 ntTSL 3 BASIC3.26□□□□□ -1.89
FOXA2Q9Y261 AC012181.1-201ENST00000479895 423 ntBASIC3.26□□□□□ -1.89
FOXA2Q9Y261 AC010273.1-201ENST00000504129 946 ntTSL 5 BASIC3.26□□□□□ -1.89
FOXA2Q9Y261 AC004704.1-201ENST00000511219 583 ntTSL 3 BASIC3.26□□□□□ -1.89
FOXA2Q9Y261 ARL2BPP6-201ENST00000512757 439 ntBASIC3.26□□□□□ -1.89
FOXA2Q9Y261 AC093677.1-201ENST00000514414 678 ntBASIC3.26□□□□□ -1.89
FOXA2Q9Y261 RNU6-311P-201ENST00000516224 102 ntBASIC3.26□□□□□ -1.89
FOXA2Q9Y261 NDST1-AS1-201ENST00000519040 368 ntTSL 2 BASIC3.26□□□□□ -1.89
FOXA2Q9Y261 AC105031.3-201ENST00000524359 616 ntTSL 3 BASIC3.26□□□□□ -1.89
FOXA2Q9Y261 PIGY-201ENST00000527353 217 ntAPPRIS P1 BASIC3.26□□□□□ -1.89
FOXA2Q9Y261 AC107016.1-201ENST00000550463 337 ntBASIC3.26□□□□□ -1.89
FOXA2Q9Y261 LINC02290-201ENST00000554187 608 ntTSL 4 BASIC3.26□□□□□ -1.89
FOXA2Q9Y261 AL133370.1-201ENST00000554679 537 ntTSL 3 BASIC3.26□□□□□ -1.89
FOXA2Q9Y261 AC010547.3-201ENST00000569271 440 ntTSL 2 BASIC3.26□□□□□ -1.89
FOXA2Q9Y261 AP001180.2-201ENST00000579413 422 ntTSL 5 BASIC3.26□□□□□ -1.89
FOXA2Q9Y261 TTN-AS1-213ENST00000584485 838 ntTSL 3 BASIC3.26□□□□□ -1.89
FOXA2Q9Y261 AC092296.3-201ENST00000589968 249 ntTSL 3 BASIC3.26□□□□□ -1.89
FOXA2Q9Y261 AC006116.5-201ENST00000591936 559 ntBASIC3.26□□□□□ -1.89
FOXA2Q9Y261 SLC14A2-AS1-203ENST00000592286 528 ntTSL 4 BASIC3.26□□□□□ -1.89
FOXA2Q9Y261 LINC00347-205ENST00000597518 868 ntTSL 5 BASIC3.26□□□□□ -1.89
FOXA2Q9Y261 DTNA-232ENST00000599844 853 ntTSL 1 (best) BASIC3.26□□□□□ -1.89
FOXA2Q9Y261 AL670729.3-201ENST00000602345 574 ntTSL 4 BASIC3.26□□□□□ -1.89
FOXA2Q9Y261 AC091057.2-201ENST00000602594 792 ntBASIC3.26□□□□□ -1.89
FOXA2Q9Y261 AC013444.2-201ENST00000603317 787 ntBASIC3.26□□□□□ -1.89
FOXA2Q9Y261 AL450336.1-201ENST00000605180 586 ntBASIC3.26□□□□□ -1.89
FOXA2Q9Y261 AL158042.1-201ENST00000605338 460 ntBASIC3.26□□□□□ -1.89
FOXA2Q9Y261 AC007349.4-201ENST00000608114 532 ntBASIC3.26□□□□□ -1.89
FOXA2Q9Y261 AC006386.1-201ENST00000619436 415 ntBASIC3.26□□□□□ -1.89
FOXA2Q9Y261 AL445264.1-201ENST00000621719 171 ntBASIC3.26□□□□□ -1.89
FOXA2Q9Y261 AL359715.5-201ENST00000623431 443 ntBASIC3.26□□□□□ -1.89
FOXA2Q9Y261 AC068787.1-201ENST00000623908 691 ntBASIC3.26□□□□□ -1.89
FOXA2Q9Y261 CSNK1G3-203ENST00000361991 2424 ntAPPRIS P3 TSL 1 (best) BASIC3.26□□□□□ -1.89
FOXA2Q9Y261 AC091152.2-201ENST00000591628 2569 ntBASIC3.26□□□□□ -1.89
FOXA2Q9Y261 AP000776.1-201ENST00000530032 1663 ntBASIC3.26□□□□□ -1.89
FOXA2Q9Y261 PIGN-240ENST00000639912 6530 ntTSL 5 BASIC3.25□□□□□ -1.89
FOXA2Q9Y261 LINC02456-201ENST00000635615 1323 ntTSL 5 BASIC3.25□□□□□ -1.89
FOXA2Q9Y261 MTCO1P9-201ENST00000505577 1534 ntBASIC3.25□□□□□ -1.89
FOXA2Q9Y261 OR12D1-207ENST00000514827 1712 ntAPPRIS P1 BASIC3.25□□□□□ -1.89
FOXA2Q9Y261 CRB1-201ENST00000367397 9023 ntTSL 2 BASIC3.25□□□□□ -1.89
FOXA2Q9Y261 OR13C4-201ENST00000277216 957 ntAPPRIS P1 BASIC3.25□□□□□ -1.89
FOXA2Q9Y261 FRG1BP-201ENST00000278882 761 ntBASIC3.25□□□□□ -1.89
FOXA2Q9Y261 DEFB112-201ENST00000322246 342 ntAPPRIS P1 TSL 1 (best) BASIC3.25□□□□□ -1.89
FOXA2Q9Y261 SNORA70.2-201ENST00000364506 135 ntBASIC3.25□□□□□ -1.89
FOXA2Q9Y261 DNASE2B-202ENST00000370665 1269 ntAPPRIS P1 TSL 1 (best) BASIC3.25□□□□□ -1.89
FOXA2Q9Y261 RNU1-89P-201ENST00000384592 164 ntBASIC3.25□□□□□ -1.89
FOXA2Q9Y261 MIR591-201ENST00000385290 95 ntBASIC3.25□□□□□ -1.89
FOXA2Q9Y261 ATP5F1P4-201ENST00000397288 746 ntBASIC3.25□□□□□ -1.89
FOXA2Q9Y261 RAB28P1-201ENST00000411517 641 ntBASIC3.25□□□□□ -1.89
FOXA2Q9Y261 AC109780.2-201ENST00000413467 845 ntBASIC3.25□□□□□ -1.89
FOXA2Q9Y261 SLC8A1-AS1-201ENST00000413479 800 ntTSL 5 BASIC3.25□□□□□ -1.89
FOXA2Q9Y261 AL592310.1-201ENST00000414330 671 ntBASIC3.25□□□□□ -1.89
FOXA2Q9Y261 MTCYBP38-201ENST00000417160 1123 ntBASIC3.25□□□□□ -1.89
FOXA2Q9Y261 ZYG11AP1-201ENST00000430329 837 ntBASIC3.25□□□□□ -1.89
FOXA2Q9Y261 AC023590.1-205ENST00000430457 676 ntTSL 3 BASIC3.25□□□□□ -1.89
FOXA2Q9Y261 AL358472.1-201ENST00000431295 329 ntBASIC3.25□□□□□ -1.89
FOXA2Q9Y261 ZMYM4-AS1-201ENST00000432683 459 ntTSL 2 BASIC3.25□□□□□ -1.89
FOXA2Q9Y261 BMS1P19-201ENST00000433925 393 ntBASIC3.25□□□□□ -1.89
FOXA2Q9Y261 KCTD9P3-201ENST00000434597 1169 ntBASIC3.25□□□□□ -1.89
FOXA2Q9Y261 HMGN2P20-201ENST00000437531 273 ntBASIC3.25□□□□□ -1.89
Retrieved 100 of 98,524 protein–RNA pairs in 83 ms