Protein–RNA interactions for Protein: Q9UPQ0

LIMCH1, LIM and calponin homology domains-containing protein 1, humanhuman

Predictions only

Length 1,083 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1Q9UPQ0 RPL7P24-201ENST00000493052 752 ntBASIC4.89□□□□□ -1.63
LIMCH1Q9UPQ0 AC108062.1-201ENST00000505133 637 ntTSL 3 BASIC4.89□□□□□ -1.63
LIMCH1Q9UPQ0 AC011396.1-201ENST00000507391 312 ntTSL 3 BASIC4.89□□□□□ -1.63
LIMCH1Q9UPQ0 AC034234.1-202ENST00000508696 339 ntTSL 3 BASIC4.89□□□□□ -1.63
LIMCH1Q9UPQ0 AP001999.2-201ENST00000529417 389 ntTSL 3 BASIC4.89□□□□□ -1.63
LIMCH1Q9UPQ0 AL136146.2-201ENST00000534594 494 ntTSL 2 BASIC4.89□□□□□ -1.63
LIMCH1Q9UPQ0 AC018410.2-201ENST00000540410 610 ntTSL 5 BASIC4.89□□□□□ -1.63
LIMCH1Q9UPQ0 PRH1-206ENST00000543626 710 ntAPPRIS P2 TSL 5 BASIC4.89□□□□□ -1.63
LIMCH1Q9UPQ0 AL358333.1-201ENST00000555115 467 ntTSL 3 BASIC4.89□□□□□ -1.63
LIMCH1Q9UPQ0 AL035425.2-201ENST00000563887 563 ntAPPRIS P1 TSL 4 BASIC4.89□□□□□ -1.63
LIMCH1Q9UPQ0 AC092138.1-201ENST00000568659 472 ntTSL 2 BASIC4.89□□□□□ -1.63
LIMCH1Q9UPQ0 AC005154.1-222ENST00000579024 341 ntTSL 5 BASIC4.89□□□□□ -1.63
LIMCH1Q9UPQ0 MIR544B-201ENST00000582372 78 ntBASIC4.89□□□□□ -1.63
LIMCH1Q9UPQ0 MIR4307-201ENST00000582802 84 ntBASIC4.89□□□□□ -1.63
LIMCH1Q9UPQ0 PRKCQ-AS1-207ENST00000607996 531 ntTSL 5 BASIC4.89□□□□□ -1.63
LIMCH1Q9UPQ0 TFG-209ENST00000615993 1244 ntTSL 1 (best) BASIC4.89□□□□□ -1.63
LIMCH1Q9UPQ0 AL445264.1-201ENST00000621719 171 ntBASIC4.89□□□□□ -1.63
LIMCH1Q9UPQ0 BIRC6-AS2-201ENST00000623382 589 ntTSL 2 BASIC4.89□□□□□ -1.63
LIMCH1Q9UPQ0 KIAA1524-208ENST00000625495 147 ntTSL 5 BASIC4.89□□□□□ -1.63
LIMCH1Q9UPQ0 UBA6-201ENST00000322244 9564 ntAPPRIS P1 TSL 1 (best) BASIC4.89□□□□□ -1.63
LIMCH1Q9UPQ0 MBNL1-224ENST00000545754 5147 ntTSL 5 BASIC4.89□□□□□ -1.63
LIMCH1Q9UPQ0 NPFFR2-203ENST00000358749 1559 ntAPPRIS P1 TSL 1 (best) BASIC4.88□□□□□ -1.63
LIMCH1Q9UPQ0 AC097714.1-201ENST00000511272 1647 ntBASIC4.88□□□□□ -1.63
LIMCH1Q9UPQ0 Y_RNA.3-201ENST00000362331 103 ntBASIC4.88□□□□□ -1.63
LIMCH1Q9UPQ0 BCL2L15-203ENST00000393320 276 ntTSL 1 (best) BASIC4.88□□□□□ -1.63
LIMCH1Q9UPQ0 CYB5AP4-201ENST00000396692 399 ntBASIC4.88□□□□□ -1.63
LIMCH1Q9UPQ0 Y_RNA.598-201ENST00000410480 95 ntBASIC4.88□□□□□ -1.63
LIMCH1Q9UPQ0 ELOCP19-201ENST00000411919 318 ntBASIC4.88□□□□□ -1.63
LIMCH1Q9UPQ0 HMGN1P14-201ENST00000412459 517 ntBASIC4.88□□□□□ -1.63
LIMCH1Q9UPQ0 RPS15AP40-201ENST00000419621 391 ntBASIC4.88□□□□□ -1.63
LIMCH1Q9UPQ0 OFD1P18Y-201ENST00000420889 959 ntBASIC4.88□□□□□ -1.63
LIMCH1Q9UPQ0 AL391336.1-201ENST00000424678 484 ntTSL 3 BASIC4.88□□□□□ -1.63
LIMCH1Q9UPQ0 NPM1P34-201ENST00000428821 893 ntBASIC4.88□□□□□ -1.63
LIMCH1Q9UPQ0 RPS3AP54-201ENST00000435535 734 ntBASIC4.88□□□□□ -1.63
LIMCH1Q9UPQ0 AL096678.1-201ENST00000438877 472 ntTSL 3 BASIC4.88□□□□□ -1.63
LIMCH1Q9UPQ0 OR6K1P-201ENST00000456766 971 ntBASIC4.88□□□□□ -1.63
LIMCH1Q9UPQ0 RPL36AP13-201ENST00000457490 317 ntBASIC4.88□□□□□ -1.63
LIMCH1Q9UPQ0 snoU109.1-201ENST00000459339 135 ntBASIC4.88□□□□□ -1.63
LIMCH1Q9UPQ0 AC108751.4-201ENST00000462931 1001 ntTSL 2 BASIC4.88□□□□□ -1.63
LIMCH1Q9UPQ0 SRRM1P2-201ENST00000464531 1192 ntBASIC4.88□□□□□ -1.63
LIMCH1Q9UPQ0 LARP1BP2-201ENST00000486594 519 ntBASIC4.88□□□□□ -1.63
LIMCH1Q9UPQ0 AF213884.1-201ENST00000488102 463 ntBASIC4.88□□□□□ -1.63
LIMCH1Q9UPQ0 AC093767.1-201ENST00000504523 156 ntBASIC4.88□□□□□ -1.63
LIMCH1Q9UPQ0 AC002456.2-201ENST00000509356 380 ntBASIC4.88□□□□□ -1.63
LIMCH1Q9UPQ0 CTD-2350J17.1-202ENST00000510456 360 ntTSL 2 BASIC4.88□□□□□ -1.63
LIMCH1Q9UPQ0 SNORD116-26-201ENST00000516006 96 ntBASIC4.88□□□□□ -1.63
LIMCH1Q9UPQ0 PAICSP4-201ENST00000517543 1253 ntBASIC4.88□□□□□ -1.63
LIMCH1Q9UPQ0 MTND4LP18-201ENST00000526864 291 ntBASIC4.88□□□□□ -1.63
LIMCH1Q9UPQ0 IL18-204ENST00000528832 795 ntAPPRIS P3 TSL 3 BASIC4.88□□□□□ -1.63
LIMCH1Q9UPQ0 AC105233.3-201ENST00000531125 744 ntBASIC4.88□□□□□ -1.63
LIMCH1Q9UPQ0 AL139174.1-201ENST00000531489 886 ntBASIC4.88□□□□□ -1.63
LIMCH1Q9UPQ0 ZDHHC20P3-201ENST00000531576 336 ntBASIC4.88□□□□□ -1.63
LIMCH1Q9UPQ0 AP003781.1-201ENST00000543403 404 ntTSL 3 BASIC4.88□□□□□ -1.63
LIMCH1Q9UPQ0 AC092470.1-201ENST00000546187 132 ntBASIC4.88□□□□□ -1.63
LIMCH1Q9UPQ0 AC027287.2-201ENST00000547559 592 ntTSL 4 BASIC4.88□□□□□ -1.63
LIMCH1Q9UPQ0 AC245505.1-201ENST00000556398 224 ntBASIC4.88□□□□□ -1.63
LIMCH1Q9UPQ0 AC084757.1-201ENST00000559987 490 ntBASIC4.88□□□□□ -1.63
LIMCH1Q9UPQ0 RPL23AP87-202ENST00000573039 466 ntBASIC4.88□□□□□ -1.63
LIMCH1Q9UPQ0 AMZ2-204ENST00000577273 895 ntTSL 5 BASIC4.88□□□□□ -1.63
LIMCH1Q9UPQ0 MTND1P15-201ENST00000579262 949 ntBASIC4.88□□□□□ -1.63
LIMCH1Q9UPQ0 AC090312.1-201ENST00000580637 348 ntBASIC4.88□□□□□ -1.63
LIMCH1Q9UPQ0 AC015911.9-201ENST00000591634 185 ntTSL 5 BASIC4.88□□□□□ -1.63
LIMCH1Q9UPQ0 AL161729.3-201ENST00000603533 673 ntBASIC4.88□□□□□ -1.63
LIMCH1Q9UPQ0 AC007566.2-201ENST00000603642 413 ntBASIC4.88□□□□□ -1.63
LIMCH1Q9UPQ0 SEPT7P9-203ENST00000604116 343 ntBASIC4.88□□□□□ -1.63
LIMCH1Q9UPQ0 AC090948.2-201ENST00000607363 564 ntBASIC4.88□□□□□ -1.63
LIMCH1Q9UPQ0 AC019193.2-201ENST00000610012 634 ntBASIC4.88□□□□□ -1.63
LIMCH1Q9UPQ0 AC109347.2-201ENST00000610220 349 ntBASIC4.88□□□□□ -1.63
LIMCH1Q9UPQ0 ATXN3-251ENST00000617719 1074 ntTSL 5 BASIC4.88□□□□□ -1.63
LIMCH1Q9UPQ0 AC073968.1-201ENST00000618594 637 ntBASIC4.88□□□□□ -1.63
LIMCH1Q9UPQ0 AC092683.2-203ENST00000618807 788 ntTSL 5 BASIC4.88□□□□□ -1.63
LIMCH1Q9UPQ0 AL023881.1-201ENST00000621088 301 ntBASIC4.88□□□□□ -1.63
LIMCH1Q9UPQ0 C17orf112-201ENST00000623702 835 ntTSL 2 BASIC4.88□□□□□ -1.63
LIMCH1Q9UPQ0 AC016687.3-202ENST00000505018 2404 ntTSL 1 (best) BASIC4.88□□□□□ -1.63
LIMCH1Q9UPQ0 RPAP2-203ENST00000610020 16993 ntAPPRIS P1 TSL 1 (best) BASIC4.88□□□□□ -1.63
LIMCH1Q9UPQ0 KANSL1L-209ENST00000457374 2264 ntTSL 2 BASIC4.88□□□□□ -1.63
LIMCH1Q9UPQ0 THEMIS-205ENST00000626040 3179 ntAPPRIS ALT2 TSL 2 BASIC4.88□□□□□ -1.63
LIMCH1Q9UPQ0 GPAM-201ENST00000348367 6371 ntAPPRIS P1 TSL 1 (best) BASIC4.87□□□□□ -1.63
LIMCH1Q9UPQ0 RC3H2-203ENST00000373670 9248 ntAPPRIS P1 TSL 5 BASIC4.87□□□□□ -1.63
LIMCH1Q9UPQ0 SCAI-201ENST00000336505 12079 ntAPPRIS P1 TSL 1 (best) BASIC4.87□□□□□ -1.63
LIMCH1Q9UPQ0 ZFYVE16-201ENST00000338008 6773 ntAPPRIS P1 TSL 1 (best) BASIC4.87□□□□□ -1.63
LIMCH1Q9UPQ0 DDX60L-209ENST00000511577 6781 ntAPPRIS P1 TSL 5 BASIC4.87□□□□□ -1.63
LIMCH1Q9UPQ0 SPAM1-205ENST00000439500 2220 ntAPPRIS ALT2 TSL 1 (best) BASIC4.87□□□□□ -1.63
LIMCH1Q9UPQ0 CENPI-202ENST00000372927 3262 ntAPPRIS P3 TSL 5 BASIC4.87□□□□□ -1.63
LIMCH1Q9UPQ0 OR11H4-201ENST00000315409 1082 ntBASIC4.87□□□□□ -1.63
LIMCH1Q9UPQ0 Y_RNA.6-201ENST00000362350 114 ntBASIC4.87□□□□□ -1.63
LIMCH1Q9UPQ0 RNU6-289P-201ENST00000364093 107 ntBASIC4.87□□□□□ -1.63
LIMCH1Q9UPQ0 C6orf62-201ENST00000378102 741 ntTSL 5 BASIC4.87□□□□□ -1.63
LIMCH1Q9UPQ0 RNU6-878P-201ENST00000384578 110 ntBASIC4.87□□□□□ -1.63
LIMCH1Q9UPQ0 MIR192-201ENST00000384915 110 ntBASIC4.87□□□□□ -1.63
LIMCH1Q9UPQ0 AL391807.1-202ENST00000419979 534 ntTSL 2 BASIC4.87□□□□□ -1.63
LIMCH1Q9UPQ0 AC012065.2-201ENST00000421295 375 ntBASIC4.87□□□□□ -1.63
LIMCH1Q9UPQ0 DIAPH3-AS2-201ENST00000428656 367 ntTSL 3 BASIC4.87□□□□□ -1.63
LIMCH1Q9UPQ0 RPL23AP46-201ENST00000438548 490 ntBASIC4.87□□□□□ -1.63
LIMCH1Q9UPQ0 AL162419.1-201ENST00000440674 873 ntTSL 1 (best) BASIC4.87□□□□□ -1.63
LIMCH1Q9UPQ0 AL357520.1-201ENST00000441557 453 ntBASIC4.87□□□□□ -1.63
LIMCH1Q9UPQ0 USP9YP12-201ENST00000450481 570 ntBASIC4.87□□□□□ -1.63
LIMCH1Q9UPQ0 AL512328.1-202ENST00000452640 850 ntTSL 3 BASIC4.87□□□□□ -1.63
LIMCH1Q9UPQ0 AL033528.1-201ENST00000453780 140 ntBASIC4.87□□□□□ -1.63
LIMCH1Q9UPQ0 RNA5SP246-201ENST00000458909 119 ntBASIC4.87□□□□□ -1.63
Retrieved 100 of 98,524 protein–RNA pairs in 135.8 ms