Protein–RNA interactions for Protein: Q9NZR4

VSX1, Visual system homeobox 1, humanhuman

Predicted RBP Predictions only

Length 365 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VSX1Q9NZR4 ZBTB44-210ENST00000530205 2179 ntTSL 1 (best) BASIC4.35□□□□□ -1.71
VSX1Q9NZR4 CCDC121-201ENST00000324364 2342 ntAPPRIS P3 TSL 1 (best) BASIC4.35□□□□□ -1.71
VSX1Q9NZR4 FAM197Y3-202ENST00000427622 2325 ntTSL 5 BASIC4.35□□□□□ -1.71
VSX1Q9NZR4 FAM197Y7-202ENST00000433321 2325 ntTSL 2 BASIC4.35□□□□□ -1.71
VSX1Q9NZR4 CSRNP3-202ENST00000342316 11684 ntAPPRIS P1 TSL 1 (best) BASIC4.35□□□□□ -1.71
VSX1Q9NZR4 PLCE1-202ENST00000371380 12024 ntAPPRIS P3 TSL 1 (best) BASIC4.35□□□□□ -1.71
VSX1Q9NZR4 MTND5P33-201ENST00000571250 1450 ntBASIC4.35□□□□□ -1.71
VSX1Q9NZR4 TMEM68-202ENST00000434581 2549 ntAPPRIS P1 TSL 5 BASIC4.35□□□□□ -1.71
VSX1Q9NZR4 PKIB-201ENST00000258014 1595 ntTSL 2 BASIC4.35□□□□□ -1.71
VSX1Q9NZR4 AC011460.1-201ENST00000636268 1834 ntBASIC4.35□□□□□ -1.71
VSX1Q9NZR4 GHR-213ENST00000622294 4312 ntTSL 5 BASIC4.35□□□□□ -1.71
VSX1Q9NZR4 NABP1-205ENST00000425611 1878 ntAPPRIS P1 TSL 1 (best) BASIC4.35□□□□□ -1.71
VSX1Q9NZR4 LINC00276-202ENST00000418420 3503 ntTSL 1 (best) BASIC4.34□□□□□ -1.71
VSX1Q9NZR4 Z73965.1-201ENST00000623412 2297 ntBASIC4.34□□□□□ -1.71
VSX1Q9NZR4 RNMT-209ENST00000592764 4108 ntTSL 2 BASIC4.34□□□□□ -1.71
VSX1Q9NZR4 EIF4E3-202ENST00000389826 6083 ntTSL 5 BASIC4.34□□□□□ -1.71
VSX1Q9NZR4 AC024337.2-201ENST00000616608 2797 ntTSL 5 BASIC4.34□□□□□ -1.71
VSX1Q9NZR4 OR2H1-203ENST00000377136 3024 ntAPPRIS P1 BASIC4.34□□□□□ -1.71
VSX1Q9NZR4 C1orf100-201ENST00000308105 579 ntAPPRIS P1 TSL 2 BASIC4.34□□□□□ -1.71
VSX1Q9NZR4 HSFY1-202ENST00000309834 1038 ntAPPRIS ALT2 TSL 1 (best) BASIC4.34□□□□□ -1.71
VSX1Q9NZR4 HSFY2-202ENST00000344884 1038 ntAPPRIS ALT2 TSL 1 (best) BASIC4.34□□□□□ -1.71
VSX1Q9NZR4 MIR1178-201ENST00000408396 91 ntBASIC4.34□□□□□ -1.71
VSX1Q9NZR4 RNA5SP118-201ENST00000410385 109 ntBASIC4.34□□□□□ -1.71
VSX1Q9NZR4 RPS15AP40-201ENST00000419621 391 ntBASIC4.34□□□□□ -1.71
VSX1Q9NZR4 AC245054.1-201ENST00000420944 258 ntBASIC4.34□□□□□ -1.71
VSX1Q9NZR4 AL033504.1-201ENST00000427015 773 ntTSL 2 BASIC4.34□□□□□ -1.71
VSX1Q9NZR4 AC093156.1-201ENST00000440382 670 ntBASIC4.34□□□□□ -1.71
VSX1Q9NZR4 AL162419.1-201ENST00000440674 873 ntTSL 1 (best) BASIC4.34□□□□□ -1.71
VSX1Q9NZR4 AC018467.1-203ENST00000440785 506 ntTSL 3 BASIC4.34□□□□□ -1.71
VSX1Q9NZR4 AC114495.1-201ENST00000441274 436 ntBASIC4.34□□□□□ -1.71
VSX1Q9NZR4 RPL38P1-201ENST00000460914 211 ntBASIC4.34□□□□□ -1.71
VSX1Q9NZR4 APOA2-207ENST00000470459 416 ntTSL 5 BASIC4.34□□□□□ -1.71
VSX1Q9NZR4 AC022034.3-201ENST00000471393 478 ntBASIC4.34□□□□□ -1.71
VSX1Q9NZR4 AL136126.1-201ENST00000473603 402 ntBASIC4.34□□□□□ -1.71
VSX1Q9NZR4 RN7SL319P-201ENST00000480656 221 ntBASIC4.34□□□□□ -1.71
VSX1Q9NZR4 RPL36AP51-201ENST00000487216 318 ntBASIC4.34□□□□□ -1.71
VSX1Q9NZR4 RN7SL558P-201ENST00000497468 299 ntBASIC4.34□□□□□ -1.71
VSX1Q9NZR4 FXN-205ENST00000498653 856 ntTSL 1 (best) BASIC4.34□□□□□ -1.71
VSX1Q9NZR4 AC090673.1-204ENST00000504038 977 ntTSL 1 (best) BASIC4.34□□□□□ -1.71
VSX1Q9NZR4 RN7SKP46-201ENST00000515942 234 ntBASIC4.34□□□□□ -1.71
VSX1Q9NZR4 SNORD116-26-201ENST00000516006 96 ntBASIC4.34□□□□□ -1.71
VSX1Q9NZR4 RRM2B-206ENST00000519317 420 ntTSL 1 (best) BASIC4.34□□□□□ -1.71
VSX1Q9NZR4 IGLVIV-53-201ENST00000520107 367 ntBASIC4.34□□□□□ -1.71
VSX1Q9NZR4 AC113145.1-201ENST00000522408 412 ntTSL 5 BASIC4.34□□□□□ -1.71
VSX1Q9NZR4 MTND1P35-201ENST00000526739 508 ntBASIC4.34□□□□□ -1.71
VSX1Q9NZR4 AC084880.2-201ENST00000536009 501 ntTSL 3 BASIC4.34□□□□□ -1.71
VSX1Q9NZR4 AK6P1-201ENST00000540219 478 ntBASIC4.34□□□□□ -1.71
VSX1Q9NZR4 AC063949.1-201ENST00000552900 865 ntBASIC4.34□□□□□ -1.71
VSX1Q9NZR4 MEG8-218ENST00000556720 456 ntTSL 3 BASIC4.34□□□□□ -1.71
VSX1Q9NZR4 AL356432.3-201ENST00000568952 465 ntBASIC4.34□□□□□ -1.71
VSX1Q9NZR4 RPL12P25-202ENST00000598100 674 ntBASIC4.34□□□□□ -1.71
VSX1Q9NZR4 AL049634.3-201ENST00000604968 457 ntBASIC4.34□□□□□ -1.71
VSX1Q9NZR4 AC010424.2-201ENST00000607594 443 ntBASIC4.34□□□□□ -1.71
VSX1Q9NZR4 AC093799.2-201ENST00000610062 578 ntBASIC4.34□□□□□ -1.71
VSX1Q9NZR4 AL020991.1-201ENST00000612314 373 ntBASIC4.34□□□□□ -1.71
VSX1Q9NZR4 ATXN3-251ENST00000617719 1074 ntTSL 5 BASIC4.34□□□□□ -1.71
VSX1Q9NZR4 AL732618.1-201ENST00000623251 301 ntBASIC4.34□□□□□ -1.71
VSX1Q9NZR4 AC009161.2-201ENST00000624626 138 ntBASIC4.34□□□□□ -1.71
VSX1Q9NZR4 SNAP23-222ENST00000626061 237 ntTSL 5 BASIC4.34□□□□□ -1.71
VSX1Q9NZR4 SNAP23-223ENST00000627440 210 ntTSL 5 BASIC4.34□□□□□ -1.71
VSX1Q9NZR4 PSMD6-202ENST00000394431 1349 ntTSL 1 (best) BASIC4.34□□□□□ -1.71
VSX1Q9NZR4 ZNF66-201ENST00000344519 1745 ntAPPRIS P1 TSL 3 BASIC4.34□□□□□ -1.71
VSX1Q9NZR4 FKTN-204ENST00000448551 1700 ntTSL 2 BASIC4.34□□□□□ -1.71
VSX1Q9NZR4 DLD-204ENST00000437604 1859 ntTSL 2 BASIC4.34□□□□□ -1.71
VSX1Q9NZR4 AC009902.3-201ENST00000606235 2172 ntBASIC4.34□□□□□ -1.72
VSX1Q9NZR4 AC009951.1-201ENST00000623674 2614 ntBASIC4.34□□□□□ -1.72
VSX1Q9NZR4 PCDH15-214ENST00000395446 3948 ntTSL 5 BASIC4.33□□□□□ -1.72
VSX1Q9NZR4 RIMS2-201ENST00000262231 3854 ntTSL 1 (best) BASIC4.33□□□□□ -1.72
VSX1Q9NZR4 TCHHL1-201ENST00000368806 3603 ntAPPRIS P1 TSL 1 (best) BASIC4.33□□□□□ -1.72
VSX1Q9NZR4 PIGN-242ENST00000640145 4505 ntAPPRIS P1 TSL 5 BASIC4.33□□□□□ -1.72
VSX1Q9NZR4 AC131971.1-201ENST00000332881 1482 ntBASIC4.33□□□□□ -1.72
VSX1Q9NZR4 CASC19-280ENST00000642102 1351 ntBASIC4.33□□□□□ -1.72
VSX1Q9NZR4 BDH2-201ENST00000296424 1126 ntAPPRIS P1 TSL 1 (best) BASIC4.33□□□□□ -1.72
VSX1Q9NZR4 CBX3P1-201ENST00000325243 554 ntBASIC4.33□□□□□ -1.72
VSX1Q9NZR4 RNU6-1120P-201ENST00000362988 108 ntBASIC4.33□□□□□ -1.72
VSX1Q9NZR4 Y_RNA.234-201ENST00000364409 97 ntBASIC4.33□□□□□ -1.72
VSX1Q9NZR4 RNU6-1207P-201ENST00000384343 107 ntBASIC4.33□□□□□ -1.72
VSX1Q9NZR4 MT-TL1-201ENST00000386347 75 ntBASIC4.33□□□□□ -1.72
VSX1Q9NZR4 AC092642.1-201ENST00000392417 425 ntBASIC4.33□□□□□ -1.72
VSX1Q9NZR4 HIGD1C-201ENST00000398455 371 ntAPPRIS P1 TSL 1 (best) BASIC4.33□□□□□ -1.72
VSX1Q9NZR4 RPL23AP48-201ENST00000406913 488 ntBASIC4.33□□□□□ -1.72
VSX1Q9NZR4 RN7SKP235-201ENST00000410662 305 ntBASIC4.33□□□□□ -1.72
VSX1Q9NZR4 AC104462.1-201ENST00000414565 447 ntTSL 2 BASIC4.33□□□□□ -1.72
VSX1Q9NZR4 TBCAP2-201ENST00000416175 326 ntBASIC4.33□□□□□ -1.72
VSX1Q9NZR4 AL158837.1-201ENST00000417644 452 ntTSL 2 BASIC4.33□□□□□ -1.72
VSX1Q9NZR4 AC008154.2-201ENST00000420268 414 ntTSL 3 BASIC4.33□□□□□ -1.72
VSX1Q9NZR4 AL359853.3-201ENST00000423879 544 ntTSL 1 (best) BASIC4.33□□□□□ -1.72
VSX1Q9NZR4 DPH5-204ENST00000427040 609 ntTSL 1 (best) BASIC4.33□□□□□ -1.72
VSX1Q9NZR4 UTS2B-203ENST00000427544 676 ntAPPRIS P1 TSL 1 (best) BASIC4.33□□□□□ -1.72
VSX1Q9NZR4 AL158835.2-201ENST00000430970 300 ntTSL 2 BASIC4.33□□□□□ -1.72
VSX1Q9NZR4 AC104850.1-201ENST00000435940 476 ntBASIC4.33□□□□□ -1.72
VSX1Q9NZR4 AC133473.1-201ENST00000455173 299 ntBASIC4.33□□□□□ -1.72
VSX1Q9NZR4 AL445433.1-201ENST00000457507 257 ntBASIC4.33□□□□□ -1.72
VSX1Q9NZR4 AP000852.1-201ENST00000472460 573 ntBASIC4.33□□□□□ -1.72
VSX1Q9NZR4 AC117430.1-201ENST00000474711 801 ntTSL 5 BASIC4.33□□□□□ -1.72
VSX1Q9NZR4 FAM107B-218ENST00000479731 570 ntAPPRIS P1 TSL 3 BASIC4.33□□□□□ -1.72
VSX1Q9NZR4 AC021382.1-201ENST00000483523 359 ntBASIC4.33□□□□□ -1.72
VSX1Q9NZR4 AC010587.1-201ENST00000505809 469 ntBASIC4.33□□□□□ -1.72
VSX1Q9NZR4 AC107398.2-201ENST00000508081 601 ntTSL 5 BASIC4.33□□□□□ -1.72
VSX1Q9NZR4 AC027613.1-201ENST00000508414 457 ntTSL 3 BASIC4.33□□□□□ -1.72
Retrieved 100 of 98,524 protein–RNA pairs in 130.3 ms