Protein–RNA interactions for Protein: Q99909

SSX3, Protein SSX3, humanhuman

Predictions only

Length 188 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SSX3Q99909 SNAP25-AS1-205ENST00000453544 368 ntTSL 5 BASIC3.39□□□□□ -1.87
SSX3Q99909 USP9YP34-201ENST00000453983 808 ntBASIC3.39□□□□□ -1.87
SSX3Q99909 MTCO3P20-201ENST00000454926 688 ntBASIC3.39□□□□□ -1.87
SSX3Q99909 AC004801.2-202ENST00000463559 283 ntBASIC3.39□□□□□ -1.87
SSX3Q99909 TAF8-207ENST00000482432 556 ntTSL 2 BASIC3.39□□□□□ -1.87
SSX3Q99909 AL139099.1-201ENST00000497398 403 ntBASIC3.39□□□□□ -1.87
SSX3Q99909 MTCYBP17-201ENST00000503579 789 ntBASIC3.39□□□□□ -1.87
SSX3Q99909 WBP1LP4-201ENST00000505043 344 ntBASIC3.39□□□□□ -1.87
SSX3Q99909 KLHL2P1-201ENST00000508691 521 ntBASIC3.39□□□□□ -1.87
SSX3Q99909 ZCCHC10-206ENST00000509008 608 ntAPPRIS ALT2 TSL 2 BASIC3.39□□□□□ -1.87
SSX3Q99909 AC079395.1-201ENST00000510981 262 ntBASIC3.39□□□□□ -1.87
SSX3Q99909 AC010342.1-201ENST00000514047 877 ntBASIC3.39□□□□□ -1.87
SSX3Q99909 RNU6-583P-201ENST00000516012 92 ntBASIC3.39□□□□□ -1.87
SSX3Q99909 AC021736.1-201ENST00000521143 563 ntTSL 4 BASIC3.39□□□□□ -1.87
SSX3Q99909 AC109466.1-214ENST00000522762 583 ntTSL 2 BASIC3.39□□□□□ -1.87
SSX3Q99909 PLCZ1-203ENST00000534932 525 ntTSL 4 BASIC3.39□□□□□ -1.87
SSX3Q99909 AL163153.1-201ENST00000554223 283 ntBASIC3.39□□□□□ -1.87
SSX3Q99909 AL355773.1-201ENST00000554458 459 ntTSL 3 BASIC3.39□□□□□ -1.87
SSX3Q99909 AMZ2-204ENST00000577273 895 ntTSL 5 BASIC3.39□□□□□ -1.87
SSX3Q99909 MIR3160-1-201ENST00000577972 85 ntBASIC3.39□□□□□ -1.87
SSX3Q99909 MIR4474-201ENST00000579189 78 ntBASIC3.39□□□□□ -1.87
SSX3Q99909 COX6CP3-201ENST00000580869 223 ntBASIC3.39□□□□□ -1.87
SSX3Q99909 MAGOH2P-202ENST00000584384 429 ntBASIC3.39□□□□□ -1.87
SSX3Q99909 AC006116.5-201ENST00000591936 559 ntBASIC3.39□□□□□ -1.87
SSX3Q99909 AC245036.5-201ENST00000596330 847 ntBASIC3.39□□□□□ -1.87
SSX3Q99909 AL391497.1-201ENST00000608671 547 ntBASIC3.39□□□□□ -1.87
SSX3Q99909 AC131235.4-201ENST00000609288 620 ntBASIC3.39□□□□□ -1.87
SSX3Q99909 AC128687.2-201ENST00000609657 566 ntBASIC3.39□□□□□ -1.87
SSX3Q99909 FP475955.2-201ENST00000623720 458 ntTSL 2 BASIC3.39□□□□□ -1.87
SSX3Q99909 AC116618.1-201ENST00000634617 774 ntBASIC3.39□□□□□ -1.87
SSX3Q99909 AC008013.2-202ENST00000637965 364 ntBASIC3.39□□□□□ -1.87
SSX3Q99909 VGLL4-219ENST00000638314 93 ntTSL 5 BASIC3.39□□□□□ -1.87
SSX3Q99909 MTUS1-228ENST00000544260 3650 ntTSL 2 BASIC3.39□□□□□ -1.87
SSX3Q99909 PCDH11X-208ENST00000504220 4017 ntAPPRIS ALT2 TSL 1 (best) BASIC3.39□□□□□ -1.87
SSX3Q99909 THUMPD3P1-201ENST00000506556 1480 ntBASIC3.39□□□□□ -1.87
SSX3Q99909 THEMIS-202ENST00000368250 4101 ntAPPRIS P3 TSL 5 BASIC3.39□□□□□ -1.87
SSX3Q99909 MME-216ENST00000615825 5523 ntAPPRIS P1 TSL 1 (best) BASIC3.39□□□□□ -1.87
SSX3Q99909 NEB-218ENST00000603639 25578 ntAPPRIS ALT2 TSL 5 BASIC3.38□□□□□ -1.87
SSX3Q99909 NEB-219ENST00000604864 25578 ntAPPRIS ALT2 TSL 5 BASIC3.38□□□□□ -1.87
SSX3Q99909 AL136164.4-201ENST00000625013 2135 ntBASIC3.38□□□□□ -1.87
SSX3Q99909 AC092326.2-201ENST00000624772 1561 ntBASIC3.38□□□□□ -1.87
SSX3Q99909 FAM214A-216ENST00000619572 3548 ntAPPRIS P1 TSL 1 (best) BASIC3.38□□□□□ -1.87
SSX3Q99909 TAS2R3-201ENST00000247879 1101 ntAPPRIS P1 BASIC3.38□□□□□ -1.87
SSX3Q99909 SPRR2C-201ENST00000290702 219 ntBASIC3.38□□□□□ -1.87
SSX3Q99909 RPL7P26-201ENST00000333817 754 ntBASIC3.38□□□□□ -1.87
SSX3Q99909 Y_RNA.311-201ENST00000365068 96 ntBASIC3.38□□□□□ -1.87
SSX3Q99909 DPRX-201ENST00000376650 648 ntAPPRIS P1 TSL 3 BASIC3.38□□□□□ -1.87
SSX3Q99909 RNU1-13P-201ENST00000384499 162 ntBASIC3.38□□□□□ -1.87
SSX3Q99909 LINC02337-201ENST00000401043 374 ntTSL 3 BASIC3.38□□□□□ -1.87
SSX3Q99909 MIR1179-201ENST00000408703 91 ntBASIC3.38□□□□□ -1.87
SSX3Q99909 RNA5SP317-201ENST00000410176 116 ntBASIC3.38□□□□□ -1.87
SSX3Q99909 RNU4-65P-201ENST00000410473 140 ntBASIC3.38□□□□□ -1.87
SSX3Q99909 RNU2-15P-201ENST00000410692 191 ntBASIC3.38□□□□□ -1.87
SSX3Q99909 RNA5SP311-201ENST00000411290 116 ntBASIC3.38□□□□□ -1.87
SSX3Q99909 TIMM9P2-201ENST00000419324 266 ntBASIC3.38□□□□□ -1.87
SSX3Q99909 RPL17P36-201ENST00000420302 549 ntBASIC3.38□□□□□ -1.87
SSX3Q99909 GRM7-AS3-203ENST00000424366 486 ntTSL 3 BASIC3.38□□□□□ -1.87
SSX3Q99909 AC011742.1-201ENST00000431448 434 ntBASIC3.38□□□□□ -1.87
SSX3Q99909 MTND4LP10-201ENST00000435146 291 ntBASIC3.38□□□□□ -1.87
SSX3Q99909 AC002465.1-201ENST00000436097 349 ntTSL 2 BASIC3.38□□□□□ -1.87
SSX3Q99909 HMGN2P20-201ENST00000437531 273 ntBASIC3.38□□□□□ -1.87
SSX3Q99909 AC004485.1-201ENST00000439839 527 ntTSL 5 BASIC3.38□□□□□ -1.87
SSX3Q99909 AL513412.1-201ENST00000445708 553 ntTSL 4 BASIC3.38□□□□□ -1.87
SSX3Q99909 LINC01878-202ENST00000453965 405 ntTSL 3 BASIC3.38□□□□□ -1.87
SSX3Q99909 RPL18AP17-201ENST00000455326 198 ntBASIC3.38□□□□□ -1.87
SSX3Q99909 RPL23AP31-201ENST00000456160 467 ntBASIC3.38□□□□□ -1.87
SSX3Q99909 AC067945.3-201ENST00000456176 386 ntTSL 5 BASIC3.38□□□□□ -1.87
SSX3Q99909 LMOD2-201ENST00000456238 918 ntTSL 1 (best) BASIC3.38□□□□□ -1.87
SSX3Q99909 NDUFAF4P3-201ENST00000456468 525 ntBASIC3.38□□□□□ -1.87
SSX3Q99909 USP9YP25-201ENST00000457708 443 ntBASIC3.38□□□□□ -1.87
SSX3Q99909 ARPC3P2-201ENST00000457786 533 ntBASIC3.38□□□□□ -1.87
SSX3Q99909 OR9M1P-201ENST00000459641 921 ntBASIC3.38□□□□□ -1.87
SSX3Q99909 AL672167.3-201ENST00000465951 960 ntBASIC3.38□□□□□ -1.87
SSX3Q99909 AC087312.1-201ENST00000471411 480 ntBASIC3.38□□□□□ -1.87
SSX3Q99909 AC097372.3-201ENST00000503593 522 ntTSL 3 BASIC3.38□□□□□ -1.87
SSX3Q99909 AC105914.1-201ENST00000511798 226 ntBASIC3.38□□□□□ -1.87
SSX3Q99909 AC008700.1-201ENST00000512571 654 ntTSL 3 BASIC3.38□□□□□ -1.87
SSX3Q99909 RNA5SP315-201ENST00000516340 116 ntBASIC3.38□□□□□ -1.87
SSX3Q99909 RNA5SP312-201ENST00000517068 116 ntBASIC3.38□□□□□ -1.87
SSX3Q99909 TRAPPC2P2-201ENST00000517589 409 ntBASIC3.38□□□□□ -1.87
SSX3Q99909 AC104986.1-201ENST00000517978 436 ntBASIC3.38□□□□□ -1.87
SSX3Q99909 AP003181.1-201ENST00000528811 445 ntTSL 3 BASIC3.38□□□□□ -1.87
SSX3Q99909 KLRF1-203ENST00000537723 598 ntTSL 1 (best) BASIC3.38□□□□□ -1.87
SSX3Q99909 LINC02378-201ENST00000540399 1003 ntTSL 5 BASIC3.38□□□□□ -1.87
SSX3Q99909 RAP1B-224ENST00000541216 701 ntTSL 1 (best) BASIC3.38□□□□□ -1.87
SSX3Q99909 REXO2-218ENST00000544827 880 ntTSL 3 BASIC3.38□□□□□ -1.87
SSX3Q99909 ARL6IP1P1-201ENST00000545836 610 ntBASIC3.38□□□□□ -1.87
SSX3Q99909 LINC02294-201ENST00000549330 497 ntTSL 2 BASIC3.38□□□□□ -1.87
SSX3Q99909 AC021739.4-201ENST00000561417 569 ntTSL 4 BASIC3.38□□□□□ -1.87
SSX3Q99909 AC010601.1-202ENST00000567304 547 ntTSL 4 BASIC3.38□□□□□ -1.87
SSX3Q99909 AGGF1P5-201ENST00000567900 919 ntBASIC3.38□□□□□ -1.87
SSX3Q99909 RN7SL600P-201ENST00000581811 299 ntBASIC3.38□□□□□ -1.87
SSX3Q99909 AC011461.1-201ENST00000592671 357 ntTSL 3 BASIC3.38□□□□□ -1.87
SSX3Q99909 VN1R85P-201ENST00000601587 426 ntBASIC3.38□□□□□ -1.87
SSX3Q99909 MRPS35P3-201ENST00000603189 709 ntBASIC3.38□□□□□ -1.87
SSX3Q99909 AC009220.3-201ENST00000604318 586 ntBASIC3.38□□□□□ -1.87
SSX3Q99909 AC067959.1-201ENST00000604334 379 ntBASIC3.38□□□□□ -1.87
SSX3Q99909 AL450489.1-201ENST00000612071 468 ntBASIC3.38□□□□□ -1.87
SSX3Q99909 AC006386.1-201ENST00000619436 415 ntBASIC3.38□□□□□ -1.87
SSX3Q99909 AC015967.1-201ENST00000619893 476 ntBASIC3.38□□□□□ -1.87
Retrieved 100 of 98,524 protein–RNA pairs in 126 ms