Protein–RNA interactions for Protein: Q96JC1

VPS39, Vam6/Vps39-like protein, humanhuman

Predictions only

Length 886 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39Q96JC1 LIX1L-AS1-204ENST00000437207 222 ntTSL 5 BASIC3.51□□□□□ -1.85
VPS39Q96JC1 LINC01004-201ENST00000445184 686 ntTSL 5 BASIC3.51□□□□□ -1.85
VPS39Q96JC1 TPTE2P6-203ENST00000450973 649 ntTSL 5 BASIC3.51□□□□□ -1.85
VPS39Q96JC1 AL445669.2-201ENST00000454425 421 ntBASIC3.51□□□□□ -1.85
VPS39Q96JC1 AC007967.1-201ENST00000455422 1159 ntBASIC3.51□□□□□ -1.85
VPS39Q96JC1 AL390730.1-201ENST00000457106 692 ntTSL 2 BASIC3.51□□□□□ -1.85
VPS39Q96JC1 snoU109.4-201ENST00000458953 143 ntBASIC3.51□□□□□ -1.85
VPS39Q96JC1 RPL23AP67-201ENST00000465341 474 ntBASIC3.51□□□□□ -1.85
VPS39Q96JC1 NDUFA6-201ENST00000470753 475 ntTSL 2 BASIC3.51□□□□□ -1.85
VPS39Q96JC1 IGKV2D-30-201ENST00000474213 395 ntAPPRIS P1 BASIC3.51□□□□□ -1.85
VPS39Q96JC1 AC016933.1-201ENST00000504735 539 ntTSL 2 BASIC3.51□□□□□ -1.85
VPS39Q96JC1 AC026412.2-201ENST00000512270 1075 ntBASIC3.51□□□□□ -1.85
VPS39Q96JC1 MTND4LP31-201ENST00000514859 294 ntBASIC3.51□□□□□ -1.85
VPS39Q96JC1 AC015468.3-201ENST00000518967 417 ntTSL 2 BASIC3.51□□□□□ -1.85
VPS39Q96JC1 AC006518.2-201ENST00000542513 940 ntBASIC3.51□□□□□ -1.85
VPS39Q96JC1 AC006518.2-202ENST00000544947 297 ntTSL 2 BASIC3.51□□□□□ -1.85
VPS39Q96JC1 AC004217.2-201ENST00000547401 751 ntTSL 3 BASIC3.51□□□□□ -1.85
VPS39Q96JC1 EEF1B2P4-201ENST00000551398 348 ntBASIC3.51□□□□□ -1.85
VPS39Q96JC1 OR4T1P-201ENST00000554933 911 ntBASIC3.51□□□□□ -1.85
VPS39Q96JC1 TIMM9-206ENST00000555593 796 ntAPPRIS P1 TSL 1 (best) BASIC3.51□□□□□ -1.85
VPS39Q96JC1 BLOC1S6-207ENST00000565216 573 ntTSL 3 BASIC3.51□□□□□ -1.85
VPS39Q96JC1 AC008507.2-201ENST00000588402 1176 ntBASIC3.51□□□□□ -1.85
VPS39Q96JC1 AC011816.2-201ENST00000607089 556 ntBASIC3.51□□□□□ -1.85
VPS39Q96JC1 LINC00343-210ENST00000608220 806 ntTSL 5 BASIC3.51□□□□□ -1.85
VPS39Q96JC1 AC002076.2-201ENST00000617362 122 ntBASIC3.51□□□□□ -1.85
VPS39Q96JC1 AL512427.1-201ENST00000618593 349 ntBASIC3.51□□□□□ -1.85
VPS39Q96JC1 AC015967.1-201ENST00000619893 476 ntBASIC3.51□□□□□ -1.85
VPS39Q96JC1 AL354696.2-202ENST00000620300 613 ntTSL 2 BASIC3.51□□□□□ -1.85
VPS39Q96JC1 ABCC9-206ENST00000621589 450 ntTSL 5 BASIC3.51□□□□□ -1.85
VPS39Q96JC1 AC006111.3-201ENST00000622137 383 ntBASIC3.51□□□□□ -1.85
VPS39Q96JC1 AL512506.2-201ENST00000624472 458 ntBASIC3.51□□□□□ -1.85
VPS39Q96JC1 hsa-mir-4776-1.1-201ENST00000636364 80 ntBASIC3.51□□□□□ -1.85
VPS39Q96JC1 BX649567.1-201ENST00000642071 1134 ntBASIC3.51□□□□□ -1.85
VPS39Q96JC1 LUZP2-208ENST00000620308 4981 ntTSL 5 BASIC3.51□□□□□ -1.85
VPS39Q96JC1 SLC38A9-201ENST00000318672 2369 ntAPPRIS P1 TSL 2 BASIC3.51□□□□□ -1.85
VPS39Q96JC1 AC007823.1-201ENST00000569932 1566 ntBASIC3.51□□□□□ -1.85
VPS39Q96JC1 ZNF85-201ENST00000300540 1531 ntTSL 1 (best) BASIC3.5□□□□□ -1.85
VPS39Q96JC1 HNRNPC-203ENST00000430246 4501 ntAPPRIS P2 TSL 1 (best) BASIC3.5□□□□□ -1.85
VPS39Q96JC1 AC058791.1-201ENST00000608412 3198 ntBASIC3.5□□□□□ -1.85
VPS39Q96JC1 DCUN1D1-201ENST00000292782 7954 ntAPPRIS P1 TSL 1 (best) BASIC3.5□□□□□ -1.85
VPS39Q96JC1 SUGT1-201ENST00000310528 14131 ntAPPRIS P3 TSL 1 (best) BASIC3.5□□□□□ -1.85
VPS39Q96JC1 SNORD9-201ENST00000362566 104 ntBASIC3.5□□□□□ -1.85
VPS39Q96JC1 AP002088.1-201ENST00000382740 395 ntBASIC3.5□□□□□ -1.85
VPS39Q96JC1 LINC02337-201ENST00000401043 374 ntTSL 3 BASIC3.5□□□□□ -1.85
VPS39Q96JC1 AL445189.1-201ENST00000405722 338 ntBASIC3.5□□□□□ -1.85
VPS39Q96JC1 ATP5A1P2-201ENST00000412323 255 ntBASIC3.5□□□□□ -1.85
VPS39Q96JC1 MRPL50P2-201ENST00000416821 482 ntBASIC3.5□□□□□ -1.85
VPS39Q96JC1 AC090952.1-201ENST00000424242 446 ntTSL 3 BASIC3.5□□□□□ -1.85
VPS39Q96JC1 AC079780.1-201ENST00000428259 207 ntBASIC3.5□□□□□ -1.85
VPS39Q96JC1 TXNP1-201ENST00000441872 371 ntBASIC3.5□□□□□ -1.85
VPS39Q96JC1 CASP12-207ENST00000447913 819 ntTSL 1 (best) BASIC3.5□□□□□ -1.85
VPS39Q96JC1 HMGB3P8-201ENST00000449709 577 ntBASIC3.5□□□□□ -1.85
VPS39Q96JC1 AC004872.1-201ENST00000456062 469 ntTSL 3 BASIC3.5□□□□□ -1.85
VPS39Q96JC1 AL445488.1-201ENST00000457272 706 ntTSL 5 BASIC3.5□□□□□ -1.85
VPS39Q96JC1 SNORD105B-201ENST00000458770 79 ntBASIC3.5□□□□□ -1.85
VPS39Q96JC1 RPL21P8-201ENST00000465083 535 ntBASIC3.5□□□□□ -1.85
VPS39Q96JC1 RPS17P11-201ENST00000474297 293 ntBASIC3.5□□□□□ -1.85
VPS39Q96JC1 AC084024.2-201ENST00000503480 791 ntBASIC3.5□□□□□ -1.85
VPS39Q96JC1 ERAP2-205ENST00000510309 1275 ntTSL 1 (best) BASIC3.5□□□□□ -1.85
VPS39Q96JC1 ABCA17P-206ENST00000512848 467 ntTSL 2 BASIC3.5□□□□□ -1.85
VPS39Q96JC1 SNORA70.18-201ENST00000516696 98 ntBASIC3.5□□□□□ -1.85
VPS39Q96JC1 AP003386.1-201ENST00000526509 504 ntTSL 3 BASIC3.5□□□□□ -1.85
VPS39Q96JC1 AL133330.2-201ENST00000532760 776 ntTSL 2 BASIC3.5□□□□□ -1.85
VPS39Q96JC1 LINC02384-206ENST00000541707 904 ntTSL 3 BASIC3.5□□□□□ -1.85
VPS39Q96JC1 REXO2-218ENST00000544827 880 ntTSL 3 BASIC3.5□□□□□ -1.85
VPS39Q96JC1 AC011602.1-201ENST00000546484 331 ntBASIC3.5□□□□□ -1.85
VPS39Q96JC1 NR2F2-AS1-211ENST00000561402 589 ntTSL 3 BASIC3.5□□□□□ -1.85
VPS39Q96JC1 AC018767.1-201ENST00000566236 405 ntTSL 3 BASIC3.5□□□□□ -1.85
VPS39Q96JC1 AC009019.1-202ENST00000568410 405 ntTSL 3 BASIC3.5□□□□□ -1.85
VPS39Q96JC1 AC100872.1-201ENST00000577765 501 ntTSL 5 BASIC3.5□□□□□ -1.85
VPS39Q96JC1 AL161896.1-201ENST00000597248 508 ntTSL 4 BASIC3.5□□□□□ -1.85
VPS39Q96JC1 AC012669.1-201ENST00000603209 283 ntBASIC3.5□□□□□ -1.85
VPS39Q96JC1 AL133393.1-201ENST00000603277 287 ntBASIC3.5□□□□□ -1.85
VPS39Q96JC1 AC099785.1-201ENST00000605697 437 ntBASIC3.5□□□□□ -1.85
VPS39Q96JC1 AL159169.3-201ENST00000608871 561 ntBASIC3.5□□□□□ -1.85
VPS39Q96JC1 ZNF461-214ENST00000618437 774 ntTSL 5 BASIC3.5□□□□□ -1.85
VPS39Q96JC1 FLG-AS1-207ENST00000628475 497 ntTSL 5 BASIC3.5□□□□□ -1.85
VPS39Q96JC1 ADGRG2-206ENST00000360279 4702 ntTSL 1 (best) BASIC3.5□□□□□ -1.85
VPS39Q96JC1 MFSD8-233ENST00000641482 4860 ntBASIC3.5□□□□□ -1.85
VPS39Q96JC1 KNTC1-204ENST00000436959 2412 ntTSL 2 BASIC3.5□□□□□ -1.85
VPS39Q96JC1 TPTE2-202ENST00000382978 1677 ntTSL 5 BASIC3.49□□□□□ -1.85
VPS39Q96JC1 PPP1R12A-204ENST00000546369 2977 ntTSL 2 BASIC3.49□□□□□ -1.85
VPS39Q96JC1 FAM35A-202ENST00000298786 3614 ntTSL 5 BASIC3.49□□□□□ -1.85
VPS39Q96JC1 VNN1-201ENST00000367928 3106 ntAPPRIS P1 TSL 1 (best) BASIC3.49□□□□□ -1.85
VPS39Q96JC1 C11orf40-201ENST00000307616 654 ntAPPRIS P1 TSL 1 (best) BASIC3.49□□□□□ -1.85
VPS39Q96JC1 FRG1CP-201ENST00000358464 769 ntBASIC3.49□□□□□ -1.85
VPS39Q96JC1 HTN3-201ENST00000381057 493 ntAPPRIS ALT2 TSL 2 BASIC3.49□□□□□ -1.85
VPS39Q96JC1 SNORA51.6-201ENST00000384151 125 ntBASIC3.49□□□□□ -1.85
VPS39Q96JC1 ZNF365-203ENST00000395249 433 ntTSL 1 (best) BASIC3.49□□□□□ -1.85
VPS39Q96JC1 AL356967.1-201ENST00000406305 431 ntBASIC3.49□□□□□ -1.85
VPS39Q96JC1 RN7SKP159-201ENST00000410657 292 ntBASIC3.49□□□□□ -1.85
VPS39Q96JC1 AC017079.2-201ENST00000416102 485 ntBASIC3.49□□□□□ -1.85
VPS39Q96JC1 AC097717.1-228ENST00000417006 754 ntTSL 3 BASIC3.49□□□□□ -1.85
VPS39Q96JC1 DBIP2-201ENST00000419076 262 ntBASIC3.49□□□□□ -1.85
VPS39Q96JC1 OR1AA1P-201ENST00000419597 916 ntBASIC3.49□□□□□ -1.85
VPS39Q96JC1 HSPE1P1-201ENST00000421494 318 ntBASIC3.49□□□□□ -1.85
VPS39Q96JC1 OFD1P2Y-201ENST00000421895 1149 ntBASIC3.49□□□□□ -1.85
VPS39Q96JC1 EBLN1-201ENST00000422359 1208 ntAPPRIS P1 BASIC3.49□□□□□ -1.85
VPS39Q96JC1 AL033504.1-201ENST00000427015 773 ntTSL 2 BASIC3.49□□□□□ -1.85
VPS39Q96JC1 TRIAP1P1-201ENST00000427062 225 ntBASIC3.49□□□□□ -1.85
Retrieved 100 of 98,524 protein–RNA pairs in 132.5 ms