Protein–RNA interactions for Protein: Q8NEL0

CCDC54, Coiled-coil domain-containing protein 54, humanhuman

Predictions only

Length 328 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC54Q8NEL0 SNORA19.3-201ENST00000516165 130 ntBASIC2.94□□□□□ -1.94
CCDC54Q8NEL0 SNORA64.4-201ENST00000516632 81 ntBASIC2.94□□□□□ -1.94
CCDC54Q8NEL0 snoZ278.1-201ENST00000517059 112 ntBASIC2.94□□□□□ -1.94
CCDC54Q8NEL0 SNORA31.26-201ENST00000517250 137 ntBASIC2.94□□□□□ -1.94
CCDC54Q8NEL0 AC022784.3-202ENST00000517816 826 ntTSL 3 BASIC2.94□□□□□ -1.94
CCDC54Q8NEL0 AC023632.1-201ENST00000518463 375 ntBASIC2.94□□□□□ -1.94
CCDC54Q8NEL0 PTK2-220ENST00000520151 573 ntTSL 4 BASIC2.94□□□□□ -1.94
CCDC54Q8NEL0 AF181450.1-201ENST00000522980 410 ntTSL 3 BASIC2.94□□□□□ -1.94
CCDC54Q8NEL0 AL133330.2-201ENST00000532760 776 ntTSL 2 BASIC2.94□□□□□ -1.94
CCDC54Q8NEL0 LRRC37A5P-202ENST00000536054 1095 ntTSL 1 (best) BASIC2.94□□□□□ -1.94
CCDC54Q8NEL0 CD69-203ENST00000536709 1020 ntTSL 2 BASIC2.94□□□□□ -1.94
CCDC54Q8NEL0 AC073487.1-201ENST00000547009 529 ntTSL 4 BASIC2.94□□□□□ -1.94
CCDC54Q8NEL0 AC089983.1-201ENST00000549807 701 ntTSL 3 BASIC2.94□□□□□ -1.94
CCDC54Q8NEL0 AC023394.1-201ENST00000578673 312 ntTSL 5 BASIC2.94□□□□□ -1.94
CCDC54Q8NEL0 AC015917.1-201ENST00000579654 510 ntBASIC2.94□□□□□ -1.94
CCDC54Q8NEL0 VN1R87P-201ENST00000596706 487 ntBASIC2.94□□□□□ -1.94
CCDC54Q8NEL0 AL606834.3-201ENST00000602615 496 ntBASIC2.94□□□□□ -1.94
CCDC54Q8NEL0 ACTR3BP1-201ENST00000605584 1247 ntBASIC2.94□□□□□ -1.94
CCDC54Q8NEL0 BX323046.1-201ENST00000610145 535 ntBASIC2.94□□□□□ -1.94
CCDC54Q8NEL0 AC010872.1-201ENST00000624225 675 ntBASIC2.94□□□□□ -1.94
CCDC54Q8NEL0 MEG8-222ENST00000637332 1237 ntTSL 5 BASIC2.94□□□□□ -1.94
CCDC54Q8NEL0 AC119674.1-207ENST00000641355 633 ntBASIC2.94□□□□□ -1.94
CCDC54Q8NEL0 HERC5-203ENST00000508159 2243 ntTSL 2 BASIC2.94□□□□□ -1.94
CCDC54Q8NEL0 AF165147.1-201ENST00000433310 6103 ntTSL 2 BASIC2.94□□□□□ -1.94
CCDC54Q8NEL0 CLCA4-201ENST00000370563 3211 ntAPPRIS P1 TSL 1 (best) BASIC2.94□□□□□ -1.94
CCDC54Q8NEL0 PROS1-203ENST00000407433 3335 ntTSL 1 (best) BASIC2.94□□□□□ -1.94
CCDC54Q8NEL0 MAPK6PS3-201ENST00000403865 2162 ntBASIC2.94□□□□□ -1.94
CCDC54Q8NEL0 AL365440.1-201ENST00000436135 2167 ntBASIC2.94□□□□□ -1.94
CCDC54Q8NEL0 MKLN1-201ENST00000352689 11156 ntAPPRIS P1 TSL 1 (best) BASIC2.94□□□□□ -1.94
CCDC54Q8NEL0 GABRG2-222ENST00000639975 3662 ntTSL 5 BASIC2.94□□□□□ -1.94
CCDC54Q8NEL0 CR383658.2-201ENST00000547576 1525 ntBASIC2.93□□□□□ -1.94
CCDC54Q8NEL0 ADGRG2-206ENST00000360279 4702 ntTSL 1 (best) BASIC2.93□□□□□ -1.94
CCDC54Q8NEL0 NEDD4-208ENST00000508342 7235 ntTSL 1 (best) BASIC2.93□□□□□ -1.94
CCDC54Q8NEL0 SCN1A-219ENST00000641575 12874 ntAPPRIS ALT1 BASIC2.93□□□□□ -1.94
CCDC54Q8NEL0 MTND5P7-201ENST00000413558 1798 ntBASIC2.93□□□□□ -1.94
CCDC54Q8NEL0 LINC01625-201ENST00000454788 1690 ntTSL 2 BASIC2.93□□□□□ -1.94
CCDC54Q8NEL0 CCDC68-201ENST00000337363 1457 ntAPPRIS P1 TSL 2 BASIC2.93□□□□□ -1.94
CCDC54Q8NEL0 UBE2Q2P1-202ENST00000354771 883 ntBASIC2.93□□□□□ -1.94
CCDC54Q8NEL0 RNU6-989P-201ENST00000362756 107 ntBASIC2.93□□□□□ -1.94
CCDC54Q8NEL0 RNU6-251P-201ENST00000363235 104 ntBASIC2.93□□□□□ -1.94
CCDC54Q8NEL0 RNU6-374P-201ENST00000364146 108 ntBASIC2.93□□□□□ -1.94
CCDC54Q8NEL0 HMGB3P23-201ENST00000414981 585 ntBASIC2.93□□□□□ -1.94
CCDC54Q8NEL0 LUZP4P1-201ENST00000415420 344 ntBASIC2.93□□□□□ -1.94
CCDC54Q8NEL0 GCG-202ENST00000418842 1289 ntAPPRIS P1 TSL 1 (best) BASIC2.93□□□□□ -1.94
CCDC54Q8NEL0 OFD1P18Y-201ENST00000420889 959 ntBASIC2.93□□□□□ -1.94
CCDC54Q8NEL0 AC007557.4-201ENST00000421907 430 ntTSL 1 (best) BASIC2.93□□□□□ -1.94
CCDC54Q8NEL0 GTF2IP23-201ENST00000423746 351 ntBASIC2.93□□□□□ -1.94
CCDC54Q8NEL0 F10-AS1-201ENST00000424635 417 ntTSL 5 BASIC2.93□□□□□ -1.94
CCDC54Q8NEL0 AC023469.2-201ENST00000425983 657 ntTSL 5 BASIC2.93□□□□□ -1.94
CCDC54Q8NEL0 AC116035.1-201ENST00000431057 517 ntTSL 3 BASIC2.93□□□□□ -1.94
CCDC54Q8NEL0 AL157387.1-201ENST00000436077 335 ntTSL 2 BASIC2.93□□□□□ -1.94
CCDC54Q8NEL0 FTH1P1-201ENST00000437933 532 ntBASIC2.93□□□□□ -1.94
CCDC54Q8NEL0 PTGES3P1-201ENST00000439531 483 ntBASIC2.93□□□□□ -1.94
CCDC54Q8NEL0 FAR2P1-203ENST00000440931 187 ntTSL 2 BASIC2.93□□□□□ -1.94
CCDC54Q8NEL0 AC112492.1-201ENST00000449607 712 ntBASIC2.93□□□□□ -1.94
CCDC54Q8NEL0 HMGN2P13-201ENST00000476476 274 ntBASIC2.93□□□□□ -1.94
CCDC54Q8NEL0 AC104982.1-201ENST00000478775 574 ntBASIC2.93□□□□□ -1.94
CCDC54Q8NEL0 MTCO3P35-201ENST00000485582 781 ntBASIC2.93□□□□□ -1.94
CCDC54Q8NEL0 AC113347.4-201ENST00000506032 685 ntTSL 3 BASIC2.93□□□□□ -1.94
CCDC54Q8NEL0 APOOP4-201ENST00000513530 597 ntBASIC2.93□□□□□ -1.94
CCDC54Q8NEL0 AC104057.1-201ENST00000515547 497 ntBASIC2.93□□□□□ -1.94
CCDC54Q8NEL0 RNA5SP385-201ENST00000515947 110 ntBASIC2.93□□□□□ -1.94
CCDC54Q8NEL0 RNA5SP135-201ENST00000517019 125 ntBASIC2.93□□□□□ -1.94
CCDC54Q8NEL0 PAICSP4-201ENST00000517543 1253 ntBASIC2.93□□□□□ -1.94
CCDC54Q8NEL0 LINC02267-202ENST00000522173 799 ntTSL 3 BASIC2.93□□□□□ -1.94
CCDC54Q8NEL0 AC239860.2-201ENST00000525886 270 ntBASIC2.93□□□□□ -1.94
CCDC54Q8NEL0 MTCO3P15-201ENST00000526563 574 ntBASIC2.93□□□□□ -1.94
CCDC54Q8NEL0 AP002992.1-202ENST00000530842 551 ntTSL 2 BASIC2.93□□□□□ -1.94
CCDC54Q8NEL0 AC087623.1-201ENST00000533301 377 ntTSL 3 BASIC2.93□□□□□ -1.94
CCDC54Q8NEL0 AP000619.3-201ENST00000535634 1127 ntBASIC2.93□□□□□ -1.94
CCDC54Q8NEL0 AC092470.1-201ENST00000546187 132 ntBASIC2.93□□□□□ -1.94
CCDC54Q8NEL0 LINC02300-201ENST00000549742 665 ntTSL 4 BASIC2.93□□□□□ -1.94
CCDC54Q8NEL0 MEG8-215ENST00000555354 469 ntTSL 3 BASIC2.93□□□□□ -1.94
CCDC54Q8NEL0 CFL2-206ENST00000556161 546 ntTSL 4 BASIC2.93□□□□□ -1.94
CCDC54Q8NEL0 AC044913.1-201ENST00000557200 430 ntBASIC2.93□□□□□ -1.94
CCDC54Q8NEL0 LINC01146-208ENST00000557355 548 ntTSL 4 BASIC2.93□□□□□ -1.94
CCDC54Q8NEL0 AL035071.2-201ENST00000565572 459 ntTSL 3 BASIC2.93□□□□□ -1.94
CCDC54Q8NEL0 LINC2194-201ENST00000567127 454 ntTSL 3 BASIC2.93□□□□□ -1.94
CCDC54Q8NEL0 AC099793.1-201ENST00000567538 285 ntTSL 3 BASIC2.93□□□□□ -1.94
CCDC54Q8NEL0 AC087463.1-201ENST00000568541 556 ntTSL 2 BASIC2.93□□□□□ -1.94
CCDC54Q8NEL0 MIR4506-201ENST00000584693 77 ntBASIC2.93□□□□□ -1.94
CCDC54Q8NEL0 DNAJC19P3-201ENST00000594491 331 ntBASIC2.93□□□□□ -1.94
CCDC54Q8NEL0 AL583856.2-201ENST00000606298 543 ntBASIC2.93□□□□□ -1.94
CCDC54Q8NEL0 AL136370.1-201ENST00000608166 691 ntBASIC2.93□□□□□ -1.94
CCDC54Q8NEL0 AL390240.1-201ENST00000612950 384 ntBASIC2.93□□□□□ -1.94
CCDC54Q8NEL0 VN1R74P-201ENST00000613259 503 ntBASIC2.93□□□□□ -1.94
CCDC54Q8NEL0 U73479.1-201ENST00000618062 168 ntBASIC2.93□□□□□ -1.94
CCDC54Q8NEL0 DLG2-AS1_1.1-201ENST00000622319 213 ntBASIC2.93□□□□□ -1.94
CCDC54Q8NEL0 AL590227.1-201ENST00000622616 315 ntTSL 5 BASIC2.93□□□□□ -1.94
CCDC54Q8NEL0 BTG3-AS1-201ENST00000626994 552 ntTSL 4 BASIC2.93□□□□□ -1.94
CCDC54Q8NEL0 AC099654.8-201ENST00000637757 681 ntBASIC2.93□□□□□ -1.94
CCDC54Q8NEL0 ATP2B1-201ENST00000261173 6777 ntAPPRIS P1 TSL 1 (best) BASIC2.93□□□□□ -1.94
CCDC54Q8NEL0 FRS2-201ENST00000397997 6550 ntAPPRIS P1 TSL 5 BASIC2.93□□□□□ -1.94
CCDC54Q8NEL0 LIG4-205ENST00000614526 3884 ntTSL 2 BASIC2.93□□□□□ -1.94
CCDC54Q8NEL0 AL499616.1-201ENST00000415437 2633 ntTSL 2 BASIC2.92□□□□□ -1.94
CCDC54Q8NEL0 ARID2-206ENST00000457135 4356 ntTSL 1 (best) BASIC2.92□□□□□ -1.94
CCDC54Q8NEL0 SOBP-204ENST00000618129 1550 ntTSL 1 (best) BASIC2.92□□□□□ -1.94
CCDC54Q8NEL0 RNU6-263P-201ENST00000363811 107 ntBASIC2.92□□□□□ -1.94
CCDC54Q8NEL0 HTN3-201ENST00000381057 493 ntAPPRIS ALT2 TSL 2 BASIC2.92□□□□□ -1.94
CCDC54Q8NEL0 MIR649-201ENST00000384843 97 ntBASIC2.92□□□□□ -1.94
Retrieved 100 of 98,524 protein–RNA pairs in 99 ms