Protein–RNA interactions for Protein: Q53GG5

PDLIM3, PDZ and LIM domain protein 3, humanhuman

Predicted RBP Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3Q53GG5 GPBP1-204ENST00000506184 2857 ntAPPRIS P3 TSL 1 (best) BASIC3.54□□□□□ -1.84
PDLIM3Q53GG5 AC107953.2-201ENST00000518362 1408 ntTSL 1 (best) BASIC3.54□□□□□ -1.84
PDLIM3Q53GG5 NCAM2-201ENST00000284894 4699 ntAPPRIS ALT2 TSL 5 BASIC3.54□□□□□ -1.84
PDLIM3Q53GG5 ALCAM-207ENST00000486979 1818 ntTSL 5 BASIC3.54□□□□□ -1.84
PDLIM3Q53GG5 LLPH-201ENST00000266604 7746 ntAPPRIS P1 TSL 1 (best) BASIC3.54□□□□□ -1.84
PDLIM3Q53GG5 ATP13A3-203ENST00000439040 7720 ntAPPRIS P1 TSL 5 BASIC3.54□□□□□ -1.84
PDLIM3Q53GG5 RPS4Y1-201ENST00000250784 1305 ntAPPRIS P1 TSL 1 (best) BASIC3.54□□□□□ -1.84
PDLIM3Q53GG5 OR5W2-201ENST00000344514 933 ntAPPRIS P1 BASIC3.54□□□□□ -1.84
PDLIM3Q53GG5 RNU6-931P-201ENST00000363850 107 ntBASIC3.54□□□□□ -1.84
PDLIM3Q53GG5 RNU6-335P-201ENST00000364563 113 ntBASIC3.54□□□□□ -1.84
PDLIM3Q53GG5 RNA5SP366-201ENST00000365454 123 ntBASIC3.54□□□□□ -1.84
PDLIM3Q53GG5 TCEAL7-202ENST00000372666 852 ntAPPRIS P1 TSL 2 BASIC3.54□□□□□ -1.84
PDLIM3Q53GG5 Y_RNA.493-201ENST00000384422 102 ntBASIC3.54□□□□□ -1.84
PDLIM3Q53GG5 AC097374.1-203ENST00000400783 485 ntBASIC3.54□□□□□ -1.84
PDLIM3Q53GG5 C1D-204ENST00000410067 736 ntAPPRIS P1 TSL 1 (best) BASIC3.54□□□□□ -1.84
PDLIM3Q53GG5 RNU4-78P-201ENST00000410940 126 ntBASIC3.54□□□□□ -1.84
PDLIM3Q53GG5 PIGPP2-201ENST00000411569 458 ntBASIC3.54□□□□□ -1.84
PDLIM3Q53GG5 EPGN-202ENST00000413830 1196 ntAPPRIS P1 TSL 1 (best) BASIC3.54□□□□□ -1.84
PDLIM3Q53GG5 AL133343.3-201ENST00000413983 469 ntTSL 2 BASIC3.54□□□□□ -1.84
PDLIM3Q53GG5 LINC01492-202ENST00000425157 659 ntTSL 5 BASIC3.54□□□□□ -1.84
PDLIM3Q53GG5 AL590378.1-201ENST00000426818 303 ntTSL 3 BASIC3.54□□□□□ -1.84
PDLIM3Q53GG5 AL365396.1-201ENST00000430854 671 ntBASIC3.54□□□□□ -1.84
PDLIM3Q53GG5 ST7-AS2-203ENST00000434993 918 ntTSL 1 (best) BASIC3.54□□□□□ -1.84
PDLIM3Q53GG5 RPL7P28-201ENST00000437739 740 ntBASIC3.54□□□□□ -1.84
PDLIM3Q53GG5 AC127537.2-201ENST00000439258 465 ntBASIC3.54□□□□□ -1.84
PDLIM3Q53GG5 RPL23AP93-201ENST00000440847 484 ntBASIC3.54□□□□□ -1.84
PDLIM3Q53GG5 EEF1E1P1-201ENST00000446998 430 ntBASIC3.54□□□□□ -1.84
PDLIM3Q53GG5 AC005297.2-201ENST00000450430 606 ntBASIC3.54□□□□□ -1.84
PDLIM3Q53GG5 RPL26P28-201ENST00000451325 435 ntBASIC3.54□□□□□ -1.84
PDLIM3Q53GG5 AL157373.1-201ENST00000456036 276 ntTSL 3 BASIC3.54□□□□□ -1.84
PDLIM3Q53GG5 AL606519.1-201ENST00000458146 580 ntTSL 2 BASIC3.54□□□□□ -1.84
PDLIM3Q53GG5 MEMO1P3-201ENST00000459811 302 ntBASIC3.54□□□□□ -1.84
PDLIM3Q53GG5 RPL23AP62-201ENST00000463396 453 ntBASIC3.54□□□□□ -1.84
PDLIM3Q53GG5 PABPC1P3-201ENST00000469174 459 ntBASIC3.54□□□□□ -1.84
PDLIM3Q53GG5 AC072039.1-201ENST00000477611 581 ntBASIC3.54□□□□□ -1.84
PDLIM3Q53GG5 FAM172BP-201ENST00000487497 1089 ntBASIC3.54□□□□□ -1.84
PDLIM3Q53GG5 RPF2P2-201ENST00000504693 896 ntBASIC3.54□□□□□ -1.84
PDLIM3Q53GG5 LINC02213-202ENST00000506021 774 ntTSL 2 BASIC3.54□□□□□ -1.84
PDLIM3Q53GG5 ZCCHC10-206ENST00000509008 608 ntAPPRIS ALT2 TSL 2 BASIC3.54□□□□□ -1.84
PDLIM3Q53GG5 MTCO3P44-201ENST00000510977 541 ntBASIC3.54□□□□□ -1.84
PDLIM3Q53GG5 USP9YP5-201ENST00000511770 630 ntBASIC3.54□□□□□ -1.84
PDLIM3Q53GG5 GMPSP1-201ENST00000514075 579 ntBASIC3.54□□□□□ -1.84
PDLIM3Q53GG5 HNRNPKP5-201ENST00000515300 253 ntBASIC3.54□□□□□ -1.84
PDLIM3Q53GG5 RNU6-232P-201ENST00000517144 64 ntBASIC3.54□□□□□ -1.84
PDLIM3Q53GG5 AF117829.1-202ENST00000524166 836 ntTSL 3 BASIC3.54□□□□□ -1.84
PDLIM3Q53GG5 KLRF1-203ENST00000537723 598 ntTSL 1 (best) BASIC3.54□□□□□ -1.84
PDLIM3Q53GG5 AC024224.1-201ENST00000538284 609 ntBASIC3.54□□□□□ -1.84
PDLIM3Q53GG5 AC009511.1-201ENST00000543527 191 ntTSL 5 BASIC3.54□□□□□ -1.84
PDLIM3Q53GG5 AC013417.1-201ENST00000549896 271 ntTSL 5 BASIC3.54□□□□□ -1.84
PDLIM3Q53GG5 AC009117.2-201ENST00000565374 504 ntTSL 3 BASIC3.54□□□□□ -1.84
PDLIM3Q53GG5 AC109446.2-201ENST00000567872 497 ntBASIC3.54□□□□□ -1.84
PDLIM3Q53GG5 AC138207.5-201ENST00000579561 409 ntTSL 3 BASIC3.54□□□□□ -1.84
PDLIM3Q53GG5 AC004542.2-201ENST00000602847 546 ntTSL 3 BASIC3.54□□□□□ -1.84
PDLIM3Q53GG5 AC112220.3-201ENST00000605502 502 ntBASIC3.54□□□□□ -1.84
PDLIM3Q53GG5 SOX2OT_exon1.1-201ENST00000614902 232 ntBASIC3.54□□□□□ -1.84
PDLIM3Q53GG5 AC009318.4-201ENST00000620496 486 ntBASIC3.54□□□□□ -1.84
PDLIM3Q53GG5 AC103858.2-201ENST00000621471 543 ntBASIC3.54□□□□□ -1.84
PDLIM3Q53GG5 CR392039.5-201ENST00000623201 510 ntBASIC3.54□□□□□ -1.84
PDLIM3Q53GG5 AC091931.1-201ENST00000623488 728 ntBASIC3.54□□□□□ -1.84
PDLIM3Q53GG5 LINC00976-201ENST00000625513 783 ntTSL 3 BASIC3.54□□□□□ -1.84
PDLIM3Q53GG5 AC010976.1-210ENST00000630740 1005 ntTSL 5 BASIC3.54□□□□□ -1.84
PDLIM3Q53GG5 XIRP2-204ENST00000409273 12269 ntTSL 1 (best) BASIC3.54□□□□□ -1.84
PDLIM3Q53GG5 TRDN-206ENST00000628709 1661 ntAPPRIS ALT2 TSL 1 (best) BASIC3.54□□□□□ -1.84
PDLIM3Q53GG5 OSBPL8-202ENST00000393249 7047 ntAPPRIS ALT1 TSL 1 (best) BASIC3.54□□□□□ -1.84
PDLIM3Q53GG5 LYST-201ENST00000389793 13480 ntAPPRIS P1 TSL 5 BASIC3.54□□□□□ -1.84
PDLIM3Q53GG5 TMEM71-202ENST00000377901 1861 ntAPPRIS ALT2 TSL 1 (best) BASIC3.54□□□□□ -1.84
PDLIM3Q53GG5 MGAT4A-204ENST00000414521 3709 ntTSL 2 BASIC3.54□□□□□ -1.84
PDLIM3Q53GG5 IFI16-208ENST00000448393 2245 ntAPPRIS ALT2 TSL 5 BASIC3.54□□□□□ -1.84
PDLIM3Q53GG5 TTC41P-203ENST00000548527 1475 ntTSL 5 BASIC3.54□□□□□ -1.84
PDLIM3Q53GG5 TRIQK-214ENST00000521988 3672 ntAPPRIS P1 TSL 1 (best) BASIC3.54□□□□□ -1.84
PDLIM3Q53GG5 TRAPPC13-208ENST00000505553 1410 ntAPPRIS ALT1 TSL 1 (best) BASIC3.53□□□□□ -1.84
PDLIM3Q53GG5 NRIP1-201ENST00000318948 7556 ntAPPRIS P1 TSL 2 BASIC3.53□□□□□ -1.84
PDLIM3Q53GG5 OR8H2-203ENST00000641311 3092 ntAPPRIS P2 BASIC3.53□□□□□ -1.84
PDLIM3Q53GG5 AL049830.3-201ENST00000555108 1991 ntTSL 1 (best) BASIC3.53□□□□□ -1.84
PDLIM3Q53GG5 SLC2A2-201ENST00000314251 3210 ntAPPRIS P1 TSL 1 (best) BASIC3.53□□□□□ -1.84
PDLIM3Q53GG5 FBXL13-204ENST00000436908 2577 ntTSL 5 BASIC3.53□□□□□ -1.84
PDLIM3Q53GG5 RMDN2-204ENST00000406384 1932 ntAPPRIS P1 TSL 1 (best) BASIC3.53□□□□□ -1.84
PDLIM3Q53GG5 OR13C4-201ENST00000277216 957 ntAPPRIS P1 BASIC3.53□□□□□ -1.84
PDLIM3Q53GG5 OR2B2-201ENST00000303324 1212 ntAPPRIS P1 BASIC3.53□□□□□ -1.84
PDLIM3Q53GG5 MIR372-201ENST00000362225 67 ntBASIC3.53□□□□□ -1.84
PDLIM3Q53GG5 RNU1-130P-201ENST00000363930 160 ntBASIC3.53□□□□□ -1.84
PDLIM3Q53GG5 WFDC6-202ENST00000372670 620 ntTSL 1 (best) BASIC3.53□□□□□ -1.84
PDLIM3Q53GG5 SNORD116-2-201ENST00000384274 95 ntBASIC3.53□□□□□ -1.84
PDLIM3Q53GG5 SNORD116-6-201ENST00000384711 96 ntBASIC3.53□□□□□ -1.84
PDLIM3Q53GG5 RNU6ATAC5P-201ENST00000388104 126 ntBASIC3.53□□□□□ -1.84
PDLIM3Q53GG5 RPL31P1-201ENST00000398116 372 ntBASIC3.53□□□□□ -1.84
PDLIM3Q53GG5 HIGD1C-201ENST00000398455 371 ntAPPRIS P1 TSL 1 (best) BASIC3.53□□□□□ -1.84
PDLIM3Q53GG5 DHFRP6-201ENST00000401776 268 ntBASIC3.53□□□□□ -1.84
PDLIM3Q53GG5 AL024474.1-201ENST00000404655 591 ntBASIC3.53□□□□□ -1.84
PDLIM3Q53GG5 MIR1911-201ENST00000410783 80 ntBASIC3.53□□□□□ -1.84
PDLIM3Q53GG5 Z92545.1-201ENST00000411782 234 ntBASIC3.53□□□□□ -1.84
PDLIM3Q53GG5 AC009518.2-201ENST00000418056 731 ntBASIC3.53□□□□□ -1.84
PDLIM3Q53GG5 RPL9P9-201ENST00000418824 636 ntTSL 2 BASIC3.53□□□□□ -1.84
PDLIM3Q53GG5 LINC01427-201ENST00000420928 504 ntTSL 3 BASIC3.53□□□□□ -1.84
PDLIM3Q53GG5 AL390962.1-201ENST00000421507 526 ntTSL 3 BASIC3.53□□□□□ -1.84
PDLIM3Q53GG5 RPL23AP38-201ENST00000423801 469 ntBASIC3.53□□□□□ -1.84
PDLIM3Q53GG5 AC017083.1-201ENST00000428093 483 ntBASIC3.53□□□□□ -1.84
PDLIM3Q53GG5 LAMTOR3P1-201ENST00000428620 370 ntBASIC3.53□□□□□ -1.84
PDLIM3Q53GG5 NANOGP6-201ENST00000429190 847 ntBASIC3.53□□□□□ -1.84
PDLIM3Q53GG5 MTND1P20-201ENST00000430341 950 ntBASIC3.53□□□□□ -1.84
Retrieved 100 of 98,524 protein–RNA pairs in 11.1 ms