Protein–RNA interactions for Protein: Q12873

CHD3, Chromodomain-helicase-DNA-binding protein 3, humanhuman

Known RBP Predictions only

Length 2,000 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3Q12873 AC138761.3-201ENST00000579993 334 ntBASIC2.44□□□□□ -2.02
CHD3Q12873 AL035413.2-201ENST00000604801 525 ntBASIC2.44□□□□□ -2.02
CHD3Q12873 AL589935.2-201ENST00000616471 1231 ntBASIC2.44□□□□□ -2.02
CHD3Q12873 AL049780.3-201ENST00000624612 1583 ntBASIC2.44□□□□□ -2.02
CHD3Q12873 DMD-201ENST00000288447 3856 ntTSL 1 (best) BASIC2.44□□□□□ -2.02
CHD3Q12873 SENP7-205ENST00000394091 4434 ntAPPRIS ALT2 TSL 1 (best) BASIC2.44□□□□□ -2.02
CHD3Q12873 HSPA4L-202ENST00000505726 2639 ntTSL 2 BASIC2.44□□□□□ -2.02
CHD3Q12873 RNU6-697P-201ENST00000363348 107 ntBASIC2.44□□□□□ -2.02
CHD3Q12873 RNU6-304P-201ENST00000364855 107 ntBASIC2.44□□□□□ -2.02
CHD3Q12873 TRIM60P18-201ENST00000441518 828 ntBASIC2.44□□□□□ -2.02
CHD3Q12873 CACYBPP2-201ENST00000453625 678 ntBASIC2.44□□□□□ -2.02
CHD3Q12873 HMGB1P25-201ENST00000468402 607 ntBASIC2.44□□□□□ -2.02
CHD3Q12873 AC097491.1-201ENST00000507857 672 ntTSL 5 BASIC2.44□□□□□ -2.02
CHD3Q12873 AC005921.1-201ENST00000510589 286 ntBASIC2.44□□□□□ -2.02
CHD3Q12873 AC012613.1-201ENST00000522685 387 ntTSL 2 BASIC2.44□□□□□ -2.02
CHD3Q12873 OR5AK3P-201ENST00000527486 1297 ntBASIC2.44□□□□□ -2.02
CHD3Q12873 AP002812.4-201ENST00000532139 286 ntBASIC2.44□□□□□ -2.02
CHD3Q12873 AC105036.1-201ENST00000566222 271 ntBASIC2.44□□□□□ -2.02
CHD3Q12873 AC022809.1-201ENST00000579247 428 ntTSL 3 BASIC2.44□□□□□ -2.02
CHD3Q12873 AC022335.1-204ENST00000590779 600 ntAPPRIS ALT2 TSL 2 BASIC2.44□□□□□ -2.02
CHD3Q12873 SMAD5-AS1_1.1-201ENST00000619886 266 ntBASIC2.44□□□□□ -2.02
CHD3Q12873 AC074099.1-201ENST00000634100 679 ntTSL 5 BASIC2.44□□□□□ -2.02
CHD3Q12873 AC008505.1-205ENST00000637847 703 ntTSL 5 BASIC2.44□□□□□ -2.02
CHD3Q12873 ARHGAP28-204ENST00000419673 5492 ntAPPRIS P2 TSL 1 (best) BASIC2.44□□□□□ -2.02
CHD3Q12873 CCDC178-204ENST00000403303 3354 ntAPPRIS ALT2 TSL 1 (best) BASIC2.43□□□□□ -2.02
CHD3Q12873 U8.2-201ENST00000363156 134 ntBASIC2.43□□□□□ -2.02
CHD3Q12873 RNA5SP21-201ENST00000410917 96 ntBASIC2.43□□□□□ -2.02
CHD3Q12873 RN7SKP192-201ENST00000411291 327 ntBASIC2.43□□□□□ -2.02
CHD3Q12873 HNRNPDLP1-201ENST00000412834 550 ntBASIC2.43□□□□□ -2.02
CHD3Q12873 AL359195.1-201ENST00000416657 339 ntTSL 3 BASIC2.43□□□□□ -2.02
CHD3Q12873 AP001599.1-201ENST00000426771 361 ntTSL 3 BASIC2.43□□□□□ -2.02
CHD3Q12873 AC063976.3-201ENST00000426849 329 ntBASIC2.43□□□□□ -2.02
CHD3Q12873 SATB1-216ENST00000491519 1000 ntTSL 2 BASIC2.43□□□□□ -2.02
CHD3Q12873 C8orf22-204ENST00000522267 739 ntAPPRIS ALT1 TSL 2 BASIC2.43□□□□□ -2.02
CHD3Q12873 EIF4A2P3-201ENST00000525903 1055 ntBASIC2.43□□□□□ -2.02
CHD3Q12873 UNC13C-202ENST00000539562 938 ntTSL 1 (best) BASIC2.43□□□□□ -2.02
CHD3Q12873 AC010198.2-201ENST00000550612 259 ntBASIC2.43□□□□□ -2.02
CHD3Q12873 G2E3-AS1-204ENST00000552511 402 ntTSL 2 BASIC2.43□□□□□ -2.02
CHD3Q12873 AC090425.2-201ENST00000608818 501 ntBASIC2.43□□□□□ -2.02
CHD3Q12873 AC073348.1-201ENST00000623002 331 ntBASIC2.43□□□□□ -2.02
CHD3Q12873 AC138649.5-201ENST00000637456 137 ntBASIC2.43□□□□□ -2.02
CHD3Q12873 PIGX-211ENST00000639474 777 ntAPPRIS P3 TSL 1 (best) BASIC2.43□□□□□ -2.02
CHD3Q12873 AL355578.1-201ENST00000607405 1328 ntBASIC2.43□□□□□ -2.02
CHD3Q12873 C5orf51-201ENST00000381647 5241 ntAPPRIS P1 TSL 1 (best) BASIC2.43□□□□□ -2.02
CHD3Q12873 NOX4-202ENST00000343727 3347 ntTSL 2 BASIC2.43□□□□□ -2.02
CHD3Q12873 CCPG1-203ENST00000442196 3453 ntAPPRIS P1 TSL 2 BASIC2.43□□□□□ -2.02
CHD3Q12873 TMEM59-205ENST00000371348 1911 ntTSL 1 (best) BASIC2.43□□□□□ -2.02
CHD3Q12873 RNU6-851P-201ENST00000384565 107 ntBASIC2.42□□□□□ -2.02
CHD3Q12873 AC004987.3-201ENST00000413879 771 ntBASIC2.42□□□□□ -2.02
CHD3Q12873 ANKRD30BP3-201ENST00000444850 1070 ntBASIC2.42□□□□□ -2.02
CHD3Q12873 AC104308.1-201ENST00000454621 333 ntBASIC2.42□□□□□ -2.02
CHD3Q12873 AC104472.2-201ENST00000469035 601 ntBASIC2.42□□□□□ -2.02
CHD3Q12873 SOX2-OT-216ENST00000497122 578 ntTSL 4 BASIC2.42□□□□□ -2.02
CHD3Q12873 Y_RNA.676-201ENST00000516393 96 ntBASIC2.42□□□□□ -2.02
CHD3Q12873 FAM60DP-201ENST00000524174 632 ntBASIC2.42□□□□□ -2.02
CHD3Q12873 AC141273.1-201ENST00000565300 479 ntTSL 5 BASIC2.42□□□□□ -2.02
CHD3Q12873 FAM106CP-201ENST00000582212 507 ntBASIC2.42□□□□□ -2.02
CHD3Q12873 AC009159.1-201ENST00000618386 642 ntBASIC2.42□□□□□ -2.02
CHD3Q12873 OR5R1-201ENST00000623286 975 ntAPPRIS P1 BASIC2.42□□□□□ -2.02
CHD3Q12873 KIAA1107-202ENST00000636278 4065 ntAPPRIS P1 TSL 5 BASIC2.42□□□□□ -2.02
CHD3Q12873 CEP57L1-201ENST00000359793 2515 ntAPPRIS P3 TSL 1 (best) BASIC2.42□□□□□ -2.02
CHD3Q12873 ZDBF2-202ENST00000611847 9890 ntTSL 5 BASIC2.42□□□□□ -2.02
CHD3Q12873 RNU1-112P-201ENST00000364401 164 ntBASIC2.42□□□□□ -2.02
CHD3Q12873 MIR196B-201ENST00000384852 84 ntBASIC2.42□□□□□ -2.02
CHD3Q12873 MIR181B1-201ENST00000385240 110 ntBASIC2.42□□□□□ -2.02
CHD3Q12873 RNU1-101P-201ENST00000391171 127 ntBASIC2.42□□□□□ -2.02
CHD3Q12873 ATP5F1P6-201ENST00000402768 767 ntBASIC2.42□□□□□ -2.02
CHD3Q12873 XKRYP4-201ENST00000414395 483 ntBASIC2.42□□□□□ -2.02
CHD3Q12873 UBXN7-204ENST00000428095 1173 ntTSL 1 (best) BASIC2.42□□□□□ -2.02
CHD3Q12873 XKRYP5-201ENST00000449659 483 ntBASIC2.42□□□□□ -2.02
CHD3Q12873 AC003982.1-202ENST00000469928 248 ntBASIC2.42□□□□□ -2.02
CHD3Q12873 RN7SL633P-201ENST00000488974 297 ntBASIC2.42□□□□□ -2.02
CHD3Q12873 DYNLL1P6-201ENST00000503440 264 ntBASIC2.42□□□□□ -2.02
CHD3Q12873 AC111000.2-201ENST00000507775 550 ntBASIC2.42□□□□□ -2.02
CHD3Q12873 C1GALT1P2-201ENST00000510813 1104 ntBASIC2.42□□□□□ -2.02
CHD3Q12873 AC008413.1-201ENST00000511864 177 ntBASIC2.42□□□□□ -2.02
CHD3Q12873 SNORA31.26-201ENST00000517250 137 ntBASIC2.42□□□□□ -2.02
CHD3Q12873 ELOCP31-201ENST00000540463 467 ntBASIC2.42□□□□□ -2.02
CHD3Q12873 AC092140.1-201ENST00000563090 549 ntTSL 3 BASIC2.42□□□□□ -2.02
CHD3Q12873 CYCSP39-201ENST00000565821 309 ntBASIC2.42□□□□□ -2.02
CHD3Q12873 MUCL1-205ENST00000619042 243 ntAPPRIS ALT2 TSL 5 BASIC2.42□□□□□ -2.02
CHD3Q12873 AC012409.2-201ENST00000619812 751 ntTSL 5 BASIC2.42□□□□□ -2.02
CHD3Q12873 AC243829.7-201ENST00000633081 225 ntBASIC2.42□□□□□ -2.02
CHD3Q12873 MTND4P34-201ENST00000572715 1371 ntBASIC2.42□□□□□ -2.02
CHD3Q12873 PTPRQ-208ENST00000614701 8289 ntAPPRIS P1 TSL 5 BASIC2.42□□□□□ -2.02
CHD3Q12873 TMEM232-201ENST00000455884 2501 ntAPPRIS P2 TSL 2 BASIC2.42□□□□□ -2.02
CHD3Q12873 RPL31P1-201ENST00000398116 372 ntBASIC2.41□□□□□ -2.02
CHD3Q12873 RNA5SP274-201ENST00000410484 108 ntBASIC2.41□□□□□ -2.02
CHD3Q12873 RNU2-6P-201ENST00000411404 190 ntBASIC2.41□□□□□ -2.02
CHD3Q12873 MTND4LP21-201ENST00000415303 295 ntBASIC2.41□□□□□ -2.02
CHD3Q12873 AL138789.1-201ENST00000425820 960 ntTSL 2 BASIC2.41□□□□□ -2.02
CHD3Q12873 MTCO1P43-201ENST00000431831 488 ntBASIC2.41□□□□□ -2.02
CHD3Q12873 AC109583.1-201ENST00000432156 268 ntBASIC2.41□□□□□ -2.02
CHD3Q12873 RPS7P5-201ENST00000441482 581 ntBASIC2.41□□□□□ -2.02
CHD3Q12873 ARPC3P2-201ENST00000457786 533 ntBASIC2.41□□□□□ -2.02
CHD3Q12873 RPL21P41-201ENST00000459863 264 ntBASIC2.41□□□□□ -2.02
CHD3Q12873 SRIP1-201ENST00000489235 288 ntBASIC2.41□□□□□ -2.02
CHD3Q12873 AC117522.3-201ENST00000507974 584 ntBASIC2.41□□□□□ -2.02
CHD3Q12873 AC093297.1-201ENST00000511712 591 ntTSL 4 BASIC2.41□□□□□ -2.02
CHD3Q12873 AL133393.1-201ENST00000603277 287 ntBASIC2.41□□□□□ -2.02
Retrieved 100 of 98,524 protein–RNA pairs in 114.9 ms