Protein–RNA interactions for Protein: P41225

SOX3, Transcription factor SOX-3, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX3P41225 MRPL42-203ENST00000547098 701 ntTSL 3 BASIC3.5□□□□□ -1.85
SOX3P41225 AC007686.2-201ENST00000554043 469 ntTSL 2 BASIC3.5□□□□□ -1.85
SOX3P41225 AC090877.1-201ENST00000561418 344 ntBASIC3.5□□□□□ -1.85
SOX3P41225 CASC16-202ENST00000563844 610 ntTSL 3 BASIC3.5□□□□□ -1.85
SOX3P41225 MIR3158-1-201ENST00000583596 81 ntBASIC3.5□□□□□ -1.85
SOX3P41225 MIR4999-201ENST00000585029 91 ntBASIC3.5□□□□□ -1.85
SOX3P41225 AC011518.1-202ENST00000592668 407 ntTSL 5 BASIC3.5□□□□□ -1.85
SOX3P41225 AC007566.2-201ENST00000603642 413 ntBASIC3.5□□□□□ -1.85
SOX3P41225 AC110741.2-201ENST00000605278 268 ntBASIC3.5□□□□□ -1.85
SOX3P41225 AL034351.1-201ENST00000605288 668 ntBASIC3.5□□□□□ -1.85
SOX3P41225 AC010680.4-201ENST00000605334 543 ntBASIC3.5□□□□□ -1.85
SOX3P41225 AP003117.2-201ENST00000606010 545 ntBASIC3.5□□□□□ -1.85
SOX3P41225 AC008083.4-201ENST00000615076 444 ntBASIC3.5□□□□□ -1.85
SOX3P41225 AC092650.2-201ENST00000619984 902 ntBASIC3.5□□□□□ -1.85
SOX3P41225 AC131159.1-201ENST00000621854 213 ntBASIC3.5□□□□□ -1.85
SOX3P41225 TNPO1P3-201ENST00000436471 2662 ntBASIC3.5□□□□□ -1.85
SOX3P41225 KIF15-203ENST00000425755 3460 ntTSL 5 BASIC3.5□□□□□ -1.85
SOX3P41225 ORC3-201ENST00000257789 2501 ntAPPRIS P3 TSL 1 (best) BASIC3.49□□□□□ -1.85
SOX3P41225 AC024560.2-201ENST00000507981 1497 ntBASIC3.49□□□□□ -1.85
SOX3P41225 CEP170-202ENST00000366542 6828 ntAPPRIS P1 TSL 5 BASIC3.49□□□□□ -1.85
SOX3P41225 RNU6-931P-201ENST00000363850 107 ntBASIC3.49□□□□□ -1.85
SOX3P41225 RNU5A-2P-201ENST00000384337 116 ntBASIC3.49□□□□□ -1.85
SOX3P41225 TRAJ18-201ENST00000390519 66 ntAPPRIS P1 BASIC3.49□□□□□ -1.85
SOX3P41225 TRAJ16-201ENST00000390521 60 ntAPPRIS P1 BASIC3.49□□□□□ -1.85
SOX3P41225 PTMAP2-201ENST00000397627 327 ntBASIC3.49□□□□□ -1.85
SOX3P41225 FAM26D-203ENST00000405399 1165 ntTSL 1 (best) BASIC3.49□□□□□ -1.85
SOX3P41225 GRM7-AS3-202ENST00000417482 454 ntTSL 3 BASIC3.49□□□□□ -1.85
SOX3P41225 LINC00387-201ENST00000422609 458 ntTSL 5 BASIC3.49□□□□□ -1.85
SOX3P41225 LINC01040-201ENST00000425048 666 ntTSL 2 BASIC3.49□□□□□ -1.85
SOX3P41225 DIAPH3-AS2-201ENST00000428656 367 ntTSL 3 BASIC3.49□□□□□ -1.85
SOX3P41225 RPS25P9-201ENST00000435591 252 ntBASIC3.49□□□□□ -1.85
SOX3P41225 OR5H14-201ENST00000437310 1080 ntAPPRIS P1 BASIC3.49□□□□□ -1.85
SOX3P41225 AL050303.1-201ENST00000444356 458 ntTSL 2 BASIC3.49□□□□□ -1.85
SOX3P41225 AL606662.1-201ENST00000445763 553 ntBASIC3.49□□□□□ -1.85
SOX3P41225 VN1R10P-201ENST00000447106 875 ntBASIC3.49□□□□□ -1.85
SOX3P41225 RSL24D1P3-201ENST00000449255 495 ntBASIC3.49□□□□□ -1.85
SOX3P41225 ATG12P2-201ENST00000456830 416 ntBASIC3.49□□□□□ -1.85
SOX3P41225 AL133162.1-201ENST00000463228 453 ntBASIC3.49□□□□□ -1.85
SOX3P41225 AC092757.1-201ENST00000467293 467 ntBASIC3.49□□□□□ -1.85
SOX3P41225 AC007537.2-201ENST00000472093 511 ntBASIC3.49□□□□□ -1.85
SOX3P41225 AC020651.1-201ENST00000490324 360 ntTSL 3 BASIC3.49□□□□□ -1.85
SOX3P41225 NAA50-206ENST00000493454 964 ntTSL 2 BASIC3.49□□□□□ -1.85
SOX3P41225 MTRNR2L5-201ENST00000512524 739 ntAPPRIS P1 BASIC3.49□□□□□ -1.85
SOX3P41225 RNU6-583P-201ENST00000516012 92 ntBASIC3.49□□□□□ -1.85
SOX3P41225 RNY4P37-201ENST00000516225 96 ntBASIC3.49□□□□□ -1.85
SOX3P41225 SNORA67.7-201ENST00000516664 135 ntBASIC3.49□□□□□ -1.85
SOX3P41225 TRMT10BP1-201ENST00000519377 943 ntBASIC3.49□□□□□ -1.85
SOX3P41225 AHI1-212ENST00000528103 441 ntTSL 1 (best) BASIC3.49□□□□□ -1.85
SOX3P41225 AL356215.1-201ENST00000528366 1102 ntTSL 2 BASIC3.49□□□□□ -1.85
SOX3P41225 AP006287.2-201ENST00000529036 502 ntTSL 2 BASIC3.49□□□□□ -1.85
SOX3P41225 AC092470.1-201ENST00000546187 132 ntBASIC3.49□□□□□ -1.85
SOX3P41225 AL512347.1-201ENST00000566420 503 ntBASIC3.49□□□□□ -1.85
SOX3P41225 AC002400.1-201ENST00000569310 726 ntBASIC3.49□□□□□ -1.85
SOX3P41225 AC135050.5-201ENST00000576336 543 ntTSL 4 BASIC3.49□□□□□ -1.85
SOX3P41225 NDUFV2-AS1-202ENST00000583081 399 ntTSL 5 BASIC3.49□□□□□ -1.85
SOX3P41225 AC103987.2-201ENST00000583436 417 ntTSL 2 BASIC3.49□□□□□ -1.85
SOX3P41225 AC093227.3-202ENST00000586606 704 ntAPPRIS P5 TSL 3 BASIC3.49□□□□□ -1.85
SOX3P41225 YWHAQP7-201ENST00000603536 658 ntBASIC3.49□□□□□ -1.85
SOX3P41225 AC018638.7-201ENST00000605836 1114 ntBASIC3.49□□□□□ -1.85
SOX3P41225 AL391497.1-201ENST00000608671 547 ntBASIC3.49□□□□□ -1.85
SOX3P41225 AC099566.1-205ENST00000609411 657 ntTSL 5 BASIC3.49□□□□□ -1.85
SOX3P41225 AC244472.2-201ENST00000617639 406 ntAPPRIS P1 BASIC3.49□□□□□ -1.85
SOX3P41225 FP475955.2-201ENST00000623720 458 ntTSL 2 BASIC3.49□□□□□ -1.85
SOX3P41225 MYCBP2-AS1-209ENST00000631152 412 ntTSL 5 BASIC3.49□□□□□ -1.85
SOX3P41225 MIR4496-201ENST00000635896 61 ntBASIC3.49□□□□□ -1.85
SOX3P41225 SGO1P2-201ENST00000429458 1589 ntBASIC3.49□□□□□ -1.85
SOX3P41225 WHAMMP2-201ENST00000512149 5482 ntTSL 5 BASIC3.49□□□□□ -1.85
SOX3P41225 DMXL1-201ENST00000311085 11072 ntAPPRIS P1 TSL 1 (best) BASIC3.49□□□□□ -1.85
SOX3P41225 CPB2-202ENST00000439329 1655 ntTSL 5 BASIC3.49□□□□□ -1.85
SOX3P41225 TNNI3K-201ENST00000326637 3001 ntAPPRIS P1 TSL 1 (best) BASIC3.49□□□□□ -1.85
SOX3P41225 SPAM1-205ENST00000439500 2220 ntAPPRIS ALT2 TSL 1 (best) BASIC3.48□□□□□ -1.85
SOX3P41225 THOC1-219ENST00000616322 2078 ntAPPRIS ALT1 TSL 5 BASIC3.48□□□□□ -1.85
SOX3P41225 ARPP19-211ENST00000568196 1489 ntTSL 2 BASIC3.48□□□□□ -1.85
SOX3P41225 ELAVL2-204ENST00000397312 3805 ntAPPRIS P3 TSL 1 (best) BASIC3.48□□□□□ -1.85
SOX3P41225 MS4A1-212ENST00000534668 3475 ntAPPRIS P1 TSL 2 BASIC3.48□□□□□ -1.85
SOX3P41225 LCA5L-218ENST00000485895 2551 ntTSL 1 (best) BASIC3.48□□□□□ -1.85
SOX3P41225 OR13C4-201ENST00000277216 957 ntAPPRIS P1 BASIC3.48□□□□□ -1.85
SOX3P41225 STARD6-201ENST00000307844 663 ntAPPRIS P1 TSL 1 (best) BASIC3.48□□□□□ -1.85
SOX3P41225 CUBN-201ENST00000377823 705 ntTSL 3 BASIC3.48□□□□□ -1.85
SOX3P41225 RNU6-1122P-201ENST00000384449 107 ntBASIC3.48□□□□□ -1.85
SOX3P41225 ATP5F1P3-201ENST00000397213 657 ntBASIC3.48□□□□□ -1.85
SOX3P41225 ARF4P3-201ENST00000397387 509 ntBASIC3.48□□□□□ -1.85
SOX3P41225 MIR1284-201ENST00000408337 120 ntBASIC3.48□□□□□ -1.85
SOX3P41225 MIR1183-201ENST00000408856 89 ntBASIC3.48□□□□□ -1.85
SOX3P41225 RNA5SP239-201ENST00000410218 129 ntBASIC3.48□□□□□ -1.85
SOX3P41225 REV3L-IT1-201ENST00000411895 382 ntTSL 5 BASIC3.48□□□□□ -1.85
SOX3P41225 FRMPD3-AS1-201ENST00000415252 457 ntTSL 3 BASIC3.48□□□□□ -1.85
SOX3P41225 AL354733.1-203ENST00000417672 495 ntTSL 5 BASIC3.48□□□□□ -1.85
SOX3P41225 AC002075.2-201ENST00000425207 252 ntBASIC3.48□□□□□ -1.85
SOX3P41225 GOT2P5-201ENST00000433995 546 ntBASIC3.48□□□□□ -1.85
SOX3P41225 AC092427.1-201ENST00000439177 601 ntBASIC3.48□□□□□ -1.85
SOX3P41225 MTCYBP34-201ENST00000439552 670 ntBASIC3.48□□□□□ -1.85
SOX3P41225 SETD6P1-201ENST00000444575 317 ntBASIC3.48□□□□□ -1.85
SOX3P41225 MTND2P19-201ENST00000449129 1012 ntBASIC3.48□□□□□ -1.85
SOX3P41225 TRGVB-201ENST00000453257 471 ntBASIC3.48□□□□□ -1.85
SOX3P41225 RPL21P129-201ENST00000491732 478 ntBASIC3.48□□□□□ -1.85
SOX3P41225 AC108941.1-201ENST00000502853 530 ntBASIC3.48□□□□□ -1.85
SOX3P41225 MTCYBP17-201ENST00000503579 789 ntBASIC3.48□□□□□ -1.85
SOX3P41225 PDLIM1P4-201ENST00000504327 1006 ntBASIC3.48□□□□□ -1.85
SOX3P41225 AC107398.2-201ENST00000508081 601 ntTSL 5 BASIC3.48□□□□□ -1.85
Retrieved 100 of 98,524 protein–RNA pairs in 77.4 ms