Protein–RNA interactions for Protein: P20585

MSH3, DNA mismatch repair protein Msh3, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH3P20585 AC068633.1-201ENST00000482142 787 ntTSL 5 BASIC3.79□□□□□ -1.8
MSH3P20585 PDLIM1P4-201ENST00000504327 1006 ntBASIC3.79□□□□□ -1.8
MSH3P20585 AC010255.3-204ENST00000514637 454 ntTSL 2 BASIC3.79□□□□□ -1.8
MSH3P20585 SNORA70.14-201ENST00000516205 110 ntBASIC3.79□□□□□ -1.8
MSH3P20585 RNY4P37-201ENST00000516225 96 ntBASIC3.79□□□□□ -1.8
MSH3P20585 RNU6-759P-201ENST00000516740 103 ntBASIC3.79□□□□□ -1.8
MSH3P20585 AC011363.1-201ENST00000524198 458 ntTSL 5 BASIC3.79□□□□□ -1.8
MSH3P20585 AL356215.1-201ENST00000528366 1102 ntTSL 2 BASIC3.79□□□□□ -1.8
MSH3P20585 AC073651.3-201ENST00000545999 417 ntTSL 3 BASIC3.79□□□□□ -1.8
MSH3P20585 AC093025.1-201ENST00000547795 569 ntTSL 2 BASIC3.79□□□□□ -1.8
MSH3P20585 LINC01481-201ENST00000552998 629 ntTSL 2 BASIC3.79□□□□□ -1.8
MSH3P20585 AC008056.1-201ENST00000553322 394 ntTSL 3 BASIC3.79□□□□□ -1.8
MSH3P20585 TIMM9-209ENST00000556367 572 ntTSL 2 BASIC3.79□□□□□ -1.8
MSH3P20585 AL358333.2-201ENST00000556834 529 ntTSL 5 BASIC3.79□□□□□ -1.8
MSH3P20585 NR2F2-AS1-208ENST00000560395 441 ntTSL 5 BASIC3.79□□□□□ -1.8
MSH3P20585 HSPE1P5-201ENST00000561489 272 ntBASIC3.79□□□□□ -1.8
MSH3P20585 AC023394.2-201ENST00000581987 792 ntTSL 5 BASIC3.79□□□□□ -1.8
MSH3P20585 AC103987.2-201ENST00000583436 417 ntTSL 2 BASIC3.79□□□□□ -1.8
MSH3P20585 SNORD39.3-201ENST00000584451 71 ntBASIC3.79□□□□□ -1.8
MSH3P20585 SLC14A2-AS1-203ENST00000592286 528 ntTSL 4 BASIC3.79□□□□□ -1.8
MSH3P20585 AC064807.4-201ENST00000607201 407 ntBASIC3.79□□□□□ -1.8
MSH3P20585 AC245297.3-203ENST00000612135 405 ntTSL 5 BASIC3.79□□□□□ -1.8
MSH3P20585 AL354976.1-201ENST00000613843 387 ntBASIC3.79□□□□□ -1.8
MSH3P20585 AC122133.1-201ENST00000613964 233 ntBASIC3.79□□□□□ -1.8
MSH3P20585 ST7-OT4_4.1-201ENST00000614993 213 ntBASIC3.79□□□□□ -1.8
MSH3P20585 AL136981.2-201ENST00000617319 734 ntBASIC3.79□□□□□ -1.8
MSH3P20585 SPTY2D1-AS1-205ENST00000635674 450 ntAPPRIS ALT2 TSL 2 BASIC3.79□□□□□ -1.8
MSH3P20585 OR5T1-201ENST00000641368 1118 ntAPPRIS P1 BASIC3.79□□□□□ -1.8
MSH3P20585 ZRANB2-201ENST00000254821 2821 ntAPPRIS ALT2 TSL 1 (best) BASIC3.79□□□□□ -1.8
MSH3P20585 AP004289.2-201ENST00000444413 1457 ntBASIC3.79□□□□□ -1.8
MSH3P20585 AC066616.2-201ENST00000559334 1481 ntBASIC3.79□□□□□ -1.8
MSH3P20585 USP9Y-201ENST00000338981 10036 ntAPPRIS P1 TSL 1 (best) BASIC3.78□□□□□ -1.8
MSH3P20585 KIF21A-203ENST00000541463 4866 ntTSL 1 (best) BASIC3.78□□□□□ -1.8
MSH3P20585 WNK3-205ENST00000620763 5400 ntTSL 5 BASIC3.78□□□□□ -1.8
MSH3P20585 ADGRL4-201ENST00000370742 3527 ntAPPRIS P1 TSL 1 (best) BASIC3.78□□□□□ -1.8
MSH3P20585 TAS2R30-201ENST00000539585 1687 ntAPPRIS P1 BASIC3.78□□□□□ -1.8
MSH3P20585 TDRD1-202ENST00000369280 4062 ntAPPRIS ALT2 TSL 5 BASIC3.78□□□□□ -1.8
MSH3P20585 R3HDM1-220ENST00000628915 4325 ntTSL 5 BASIC3.78□□□□□ -1.8
MSH3P20585 LPAR6-209ENST00000620633 2175 ntAPPRIS P1 TSL 5 BASIC3.78□□□□□ -1.8
MSH3P20585 MACC1-201ENST00000332878 2994 ntAPPRIS P1 TSL 1 (best) BASIC3.78□□□□□ -1.8
MSH3P20585 RNU1-18P-201ENST00000363062 164 ntBASIC3.78□□□□□ -1.8
MSH3P20585 RN7SKP280-201ENST00000364196 304 ntBASIC3.78□□□□□ -1.8
MSH3P20585 RAD17-208ENST00000380774 2117 ntAPPRIS P1 TSL 1 (best) BASIC3.78□□□□□ -1.8
MSH3P20585 ATP5F1P4-201ENST00000397288 746 ntBASIC3.78□□□□□ -1.8
MSH3P20585 PIGPP2-201ENST00000411569 458 ntBASIC3.78□□□□□ -1.8
MSH3P20585 LANCL1-AS1-201ENST00000416344 714 ntTSL 3 BASIC3.78□□□□□ -1.8
MSH3P20585 DNAJA1P2-201ENST00000421360 1197 ntBASIC3.78□□□□□ -1.8
MSH3P20585 AC008065.1-201ENST00000428525 348 ntBASIC3.78□□□□□ -1.8
MSH3P20585 RPL36P19-201ENST00000430744 301 ntBASIC3.78□□□□□ -1.8
MSH3P20585 UBE2D3P4-201ENST00000441973 436 ntBASIC3.78□□□□□ -1.8
MSH3P20585 KATNBL1P3-201ENST00000443475 909 ntBASIC3.78□□□□□ -1.8
MSH3P20585 SLC31A1P1-201ENST00000451221 567 ntBASIC3.78□□□□□ -1.8
MSH3P20585 AC013828.1-201ENST00000481845 158 ntBASIC3.78□□□□□ -1.8
MSH3P20585 AC108941.1-201ENST00000502853 530 ntBASIC3.78□□□□□ -1.8
MSH3P20585 AC008572.1-201ENST00000507269 442 ntTSL 5 BASIC3.78□□□□□ -1.8
MSH3P20585 WWC2-AS1-201ENST00000511846 404 ntTSL 1 (best) BASIC3.78□□□□□ -1.8
MSH3P20585 OR5BM1P-201ENST00000512021 366 ntBASIC3.78□□□□□ -1.8
MSH3P20585 AC026402.1-201ENST00000513642 170 ntBASIC3.78□□□□□ -1.8
MSH3P20585 RNU6-352P-201ENST00000516908 107 ntBASIC3.78□□□□□ -1.8
MSH3P20585 CTHRC1-204ENST00000520880 560 ntTSL 4 BASIC3.78□□□□□ -1.8
MSH3P20585 NECAB1-205ENST00000522820 811 ntTSL 2 BASIC3.78□□□□□ -1.8
MSH3P20585 AP006287.2-201ENST00000529036 502 ntTSL 2 BASIC3.78□□□□□ -1.8
MSH3P20585 SLC2A13P1-201ENST00000531560 322 ntBASIC3.78□□□□□ -1.8
MSH3P20585 CLEC7A-212ENST00000533022 625 ntTSL 1 (best) BASIC3.78□□□□□ -1.8
MSH3P20585 MRPL42-208ENST00000552217 920 ntAPPRIS P2 TSL 2 BASIC3.78□□□□□ -1.8
MSH3P20585 AC090877.1-201ENST00000561418 344 ntBASIC3.78□□□□□ -1.8
MSH3P20585 BNIP3P5-201ENST00000562290 498 ntBASIC3.78□□□□□ -1.8
MSH3P20585 AL133457.1-201ENST00000564251 987 ntBASIC3.78□□□□□ -1.8
MSH3P20585 AC092326.1-201ENST00000567465 674 ntTSL 3 BASIC3.78□□□□□ -1.8
MSH3P20585 AL353708.2-201ENST00000567486 447 ntTSL 3 BASIC3.78□□□□□ -1.8
MSH3P20585 AP001521.1-201ENST00000609150 300 ntBASIC3.78□□□□□ -1.8
MSH3P20585 AC245297.2-201ENST00000610119 565 ntBASIC3.78□□□□□ -1.8
MSH3P20585 AC004223.4-201ENST00000612426 332 ntBASIC3.78□□□□□ -1.8
MSH3P20585 AC009090.3-201ENST00000616553 565 ntBASIC3.78□□□□□ -1.8
MSH3P20585 AL391597.2-201ENST00000635698 479 ntTSL 5 BASIC3.78□□□□□ -1.8
MSH3P20585 AC244205.2-202ENST00000635781 342 ntBASIC3.78□□□□□ -1.8
MSH3P20585 SLC2A2-201ENST00000314251 3210 ntAPPRIS P1 TSL 1 (best) BASIC3.78□□□□□ -1.8
MSH3P20585 PNISR-201ENST00000369239 5112 ntAPPRIS P1 TSL 1 (best) BASIC3.78□□□□□ -1.8
MSH3P20585 AGTR2-201ENST00000371906 2882 ntAPPRIS P1 TSL 1 (best) BASIC3.78□□□□□ -1.8
MSH3P20585 WDR72-201ENST00000360509 5887 ntAPPRIS P2 TSL 1 (best) BASIC3.78□□□□□ -1.8
MSH3P20585 FAR2-203ENST00000547116 1787 ntTSL 2 BASIC3.78□□□□□ -1.8
MSH3P20585 FER-201ENST00000281092 12119 ntAPPRIS P1 TSL 1 (best) BASIC3.78□□□□□ -1.8
MSH3P20585 TTC41P-203ENST00000548527 1475 ntTSL 5 BASIC3.78□□□□□ -1.8
MSH3P20585 ARHGAP28-202ENST00000314319 5415 ntAPPRIS P2 TSL 5 BASIC3.77□□□□□ -1.81
MSH3P20585 ADAT2-203ENST00000606514 6651 ntTSL 1 (best) BASIC3.77□□□□□ -1.81
MSH3P20585 OR4A15-201ENST00000314706 1035 ntBASIC3.77□□□□□ -1.81
MSH3P20585 SNORA4.1-201ENST00000364263 144 ntBASIC3.77□□□□□ -1.81
MSH3P20585 RNU1-64P-201ENST00000365443 163 ntBASIC3.77□□□□□ -1.81
MSH3P20585 U1.1-201ENST00000384101 164 ntBASIC3.77□□□□□ -1.81
MSH3P20585 RNU6-921P-201ENST00000384361 107 ntBASIC3.77□□□□□ -1.81
MSH3P20585 RNU6-441P-201ENST00000384545 106 ntBASIC3.77□□□□□ -1.81
MSH3P20585 TRAJ18-201ENST00000390519 66 ntAPPRIS P1 BASIC3.77□□□□□ -1.81
MSH3P20585 RPL32P23-201ENST00000397237 405 ntBASIC3.77□□□□□ -1.81
MSH3P20585 MIR1284-201ENST00000408337 120 ntBASIC3.77□□□□□ -1.81
MSH3P20585 NUP35P2-201ENST00000416748 943 ntBASIC3.77□□□□□ -1.81
MSH3P20585 RPL17P36-201ENST00000420302 549 ntBASIC3.77□□□□□ -1.81
MSH3P20585 LINC01427-201ENST00000420928 504 ntTSL 3 BASIC3.77□□□□□ -1.81
MSH3P20585 LINC01318-201ENST00000423593 597 ntTSL 4 BASIC3.77□□□□□ -1.81
MSH3P20585 MTND4P32-201ENST00000437189 1237 ntBASIC3.77□□□□□ -1.81
MSH3P20585 LIX1L-AS1-204ENST00000437207 222 ntTSL 5 BASIC3.77□□□□□ -1.81
Retrieved 100 of 98,524 protein–RNA pairs in 101.9 ms