Protein–RNA interactions for Protein: P09017

HOXC4, Homeobox protein Hox-C4, humanhuman

Predicted RBP Predictions only

Length 264 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC4P09017 CKS1BP5-201ENST00000434172 273 ntBASIC3.2□□□□□ -1.9
HOXC4P09017 SETP5-201ENST00000437270 562 ntBASIC3.2□□□□□ -1.9
HOXC4P09017 AL138799.3-201ENST00000438968 350 ntBASIC3.2□□□□□ -1.9
HOXC4P09017 Z93403.1-202ENST00000440002 713 ntTSL 3 BASIC3.2□□□□□ -1.9
HOXC4P09017 RPL23AP33-201ENST00000442301 452 ntBASIC3.2□□□□□ -1.9
HOXC4P09017 AL035701.1-201ENST00000444038 462 ntTSL 3 BASIC3.2□□□□□ -1.9
HOXC4P09017 AC068135.1-201ENST00000446164 246 ntBASIC3.2□□□□□ -1.9
HOXC4P09017 AL360091.1-201ENST00000447949 496 ntTSL 5 BASIC3.2□□□□□ -1.9
HOXC4P09017 TMEM247-203ENST00000449601 741 ntTSL 1 (best) BASIC3.2□□□□□ -1.9
HOXC4P09017 AC068580.2-201ENST00000449749 338 ntTSL 5 BASIC3.2□□□□□ -1.9
HOXC4P09017 GJE1-201ENST00000450456 916 ntAPPRIS P1 TSL 5 BASIC3.2□□□□□ -1.9
HOXC4P09017 IQCG-204ENST00000453254 1230 ntTSL 2 BASIC3.2□□□□□ -1.9
HOXC4P09017 AL356270.1-201ENST00000456587 522 ntTSL 3 BASIC3.2□□□□□ -1.9
HOXC4P09017 snoU109.3-201ENST00000459477 145 ntBASIC3.2□□□□□ -1.9
HOXC4P09017 AC132825.2-201ENST00000483901 504 ntTSL 5 BASIC3.2□□□□□ -1.9
HOXC4P09017 LINC02465-202ENST00000508724 503 ntTSL 3 BASIC3.2□□□□□ -1.9
HOXC4P09017 TMEM248P1-201ENST00000510579 951 ntBASIC3.2□□□□□ -1.9
HOXC4P09017 AC010265.1-201ENST00000513509 211 ntBASIC3.2□□□□□ -1.9
HOXC4P09017 Y_RNA.717-201ENST00000517106 92 ntBASIC3.2□□□□□ -1.9
HOXC4P09017 AC104012.1-201ENST00000517848 719 ntTSL 3 BASIC3.2□□□□□ -1.9
HOXC4P09017 LY96-202ENST00000518893 430 ntTSL 3 BASIC3.2□□□□□ -1.9
HOXC4P09017 AC009435.1-201ENST00000519555 574 ntTSL 4 BASIC3.2□□□□□ -1.9
HOXC4P09017 AP002812.3-201ENST00000527012 551 ntTSL 5 BASIC3.2□□□□□ -1.9
HOXC4P09017 AC015771.1-201ENST00000527283 554 ntTSL 4 BASIC3.2□□□□□ -1.9
HOXC4P09017 AL139174.1-201ENST00000531489 886 ntBASIC3.2□□□□□ -1.9
HOXC4P09017 AC004024.1-201ENST00000549244 247 ntBASIC3.2□□□□□ -1.9
HOXC4P09017 SERPINE4P-201ENST00000554978 281 ntBASIC3.2□□□□□ -1.9
HOXC4P09017 AL355097.1-201ENST00000555889 539 ntTSL 4 BASIC3.2□□□□□ -1.9
HOXC4P09017 AP001972.3-202ENST00000603012 375 ntTSL 3 BASIC3.2□□□□□ -1.9
HOXC4P09017 AL512427.1-201ENST00000618593 349 ntBASIC3.2□□□□□ -1.9
HOXC4P09017 AC245427.3-201ENST00000632041 51 ntAPPRIS P1 BASIC3.2□□□□□ -1.9
HOXC4P09017 AC013437.2-201ENST00000639587 677 ntBASIC3.2□□□□□ -1.9
HOXC4P09017 OR6C3-203ENST00000641740 1093 ntAPPRIS P1 BASIC3.2□□□□□ -1.9
HOXC4P09017 RABGAP1L-203ENST00000347255 1744 ntTSL 1 (best) BASIC3.19□□□□□ -1.9
HOXC4P09017 GMFB-208ENST00000554908 6721 ntTSL 1 (best) BASIC3.19□□□□□ -1.9
HOXC4P09017 IARS-201ENST00000375627 697 ntTSL 3 BASIC3.19□□□□□ -1.9
HOXC4P09017 SNORA7.4-201ENST00000384249 137 ntBASIC3.19□□□□□ -1.9
HOXC4P09017 SNORA51.12-201ENST00000384448 134 ntBASIC3.19□□□□□ -1.9
HOXC4P09017 AC096533.1-201ENST00000411645 353 ntBASIC3.19□□□□□ -1.9
HOXC4P09017 LINC00894-201ENST00000413076 403 ntTSL 3 BASIC3.19□□□□□ -1.9
HOXC4P09017 SSR1P2-201ENST00000415208 787 ntBASIC3.19□□□□□ -1.9
HOXC4P09017 AC008280.1-201ENST00000418851 412 ntBASIC3.19□□□□□ -1.9
HOXC4P09017 C5orf58-201ENST00000421269 406 ntAPPRIS ALT2 TSL 2 BASIC3.19□□□□□ -1.9
HOXC4P09017 TCEAL3-AS1-201ENST00000424887 361 ntTSL 5 BASIC3.19□□□□□ -1.9
HOXC4P09017 LINC01040-201ENST00000425048 666 ntTSL 2 BASIC3.19□□□□□ -1.9
HOXC4P09017 CYCSP32-201ENST00000440548 321 ntBASIC3.19□□□□□ -1.9
HOXC4P09017 RPS27P5-201ENST00000444247 244 ntBASIC3.19□□□□□ -1.9
HOXC4P09017 Z99127.3-201ENST00000448158 395 ntBASIC3.19□□□□□ -1.9
HOXC4P09017 AC115115.1-201ENST00000449927 248 ntBASIC3.19□□□□□ -1.9
HOXC4P09017 RPL7P55-201ENST00000450522 746 ntBASIC3.19□□□□□ -1.9
HOXC4P09017 AL023581.2-201ENST00000454588 552 ntTSL 2 BASIC3.19□□□□□ -1.9
HOXC4P09017 PTGES3P5-201ENST00000455109 434 ntBASIC3.19□□□□□ -1.9
HOXC4P09017 AL139824.2-201ENST00000458731 1095 ntBASIC3.19□□□□□ -1.9
HOXC4P09017 RPL6P9-201ENST00000466502 859 ntBASIC3.19□□□□□ -1.9
HOXC4P09017 VPS13A-211ENST00000484581 1155 ntTSL 2 BASIC3.19□□□□□ -1.9
HOXC4P09017 AC078918.1-201ENST00000498515 228 ntBASIC3.19□□□□□ -1.9
HOXC4P09017 AC099520.1-203ENST00000506976 464 ntTSL 3 BASIC3.19□□□□□ -1.9
HOXC4P09017 AC112518.2-201ENST00000508565 425 ntBASIC3.19□□□□□ -1.9
HOXC4P09017 AC104827.1-202ENST00000511917 1049 ntTSL 1 (best) BASIC3.19□□□□□ -1.9
HOXC4P09017 LINC02497-201ENST00000515292 507 ntTSL 3 BASIC3.19□□□□□ -1.9
HOXC4P09017 SNORA19.3-201ENST00000516165 130 ntBASIC3.19□□□□□ -1.9
HOXC4P09017 MIR2276-201ENST00000516886 89 ntBASIC3.19□□□□□ -1.9
HOXC4P09017 AC021451.1-201ENST00000523498 1129 ntBASIC3.19□□□□□ -1.9
HOXC4P09017 AC090092.1-201ENST00000530576 510 ntTSL 2 BASIC3.19□□□□□ -1.9
HOXC4P09017 AP004242.1-201ENST00000533701 349 ntBASIC3.19□□□□□ -1.9
HOXC4P09017 AC139103.1-201ENST00000534696 1030 ntBASIC3.19□□□□□ -1.9
HOXC4P09017 CERS3-AS1-202ENST00000560718 432 ntTSL 3 BASIC3.19□□□□□ -1.9
HOXC4P09017 AL157938.2-203ENST00000589540 931 ntTSL 5 BASIC3.19□□□□□ -1.9
HOXC4P09017 AC125494.3-201ENST00000602759 455 ntBASIC3.19□□□□□ -1.9
HOXC4P09017 AL445435.1-201ENST00000604232 665 ntBASIC3.19□□□□□ -1.9
HOXC4P09017 AC008759.3-201ENST00000613300 508 ntBASIC3.19□□□□□ -1.9
HOXC4P09017 AC140725.3-201ENST00000616193 880 ntBASIC3.19□□□□□ -1.9
HOXC4P09017 STMN1P1-201ENST00000617809 440 ntBASIC3.19□□□□□ -1.9
HOXC4P09017 AC078880.5-201ENST00000617845 421 ntBASIC3.19□□□□□ -1.9
HOXC4P09017 AC048344.4-201ENST00000619744 527 ntBASIC3.19□□□□□ -1.9
HOXC4P09017 AC018692.3-201ENST00000623929 123 ntBASIC3.19□□□□□ -1.9
HOXC4P09017 AC011139.1-202ENST00000637744 563 ntTSL 5 BASIC3.19□□□□□ -1.9
HOXC4P09017 MIR622-201ENST00000638396 96 ntBASIC3.19□□□□□ -1.9
HOXC4P09017 PHF6-205ENST00000625464 4434 ntAPPRIS ALT1 TSL 5 BASIC3.19□□□□□ -1.9
HOXC4P09017 LRMP-221ENST00000636465 4540 ntAPPRIS ALT2 TSL 5 BASIC3.19□□□□□ -1.9
HOXC4P09017 CPB2-202ENST00000439329 1655 ntTSL 5 BASIC3.19□□□□□ -1.9
HOXC4P09017 AC007496.3-201ENST00000624987 3443 ntBASIC3.19□□□□□ -1.9
HOXC4P09017 DMD-201ENST00000288447 3856 ntTSL 1 (best) BASIC3.19□□□□□ -1.9
HOXC4P09017 SAGE4P-201ENST00000442271 3381 ntBASIC3.18□□□□□ -1.9
HOXC4P09017 PAPPA-AS1-201ENST00000445861 2450 ntBASIC3.18□□□□□ -1.9
HOXC4P09017 ZNF29P-201ENST00000225587 168 ntBASIC3.18□□□□□ -1.9
HOXC4P09017 PTPRC-202ENST00000367364 1017 ntTSL 1 (best) BASIC3.18□□□□□ -1.9
HOXC4P09017 GSTA8P-201ENST00000404253 637 ntBASIC3.18□□□□□ -1.9
HOXC4P09017 BTBD10P2-201ENST00000404779 676 ntBASIC3.18□□□□□ -1.9
HOXC4P09017 TEX41-204ENST00000423031 491 ntTSL 4 BASIC3.18□□□□□ -1.9
HOXC4P09017 AC087857.1-201ENST00000425894 467 ntTSL 3 BASIC3.18□□□□□ -1.9
HOXC4P09017 OR51AB1P-201ENST00000429046 620 ntBASIC3.18□□□□□ -1.9
HOXC4P09017 ETF1P3-201ENST00000430422 1160 ntBASIC3.18□□□□□ -1.9
HOXC4P09017 NEK4P1-201ENST00000433383 879 ntBASIC3.18□□□□□ -1.9
HOXC4P09017 LINC00354-202ENST00000440860 376 ntTSL 2 BASIC3.18□□□□□ -1.9
HOXC4P09017 Z77249.1-201ENST00000444622 1175 ntBASIC3.18□□□□□ -1.9
HOXC4P09017 DUXAP8-207ENST00000456786 622 ntBASIC3.18□□□□□ -1.9
HOXC4P09017 AC108751.4-201ENST00000462931 1001 ntTSL 2 BASIC3.18□□□□□ -1.9
HOXC4P09017 RPL27AP5-201ENST00000469428 449 ntBASIC3.18□□□□□ -1.9
HOXC4P09017 CNOT10-AS1-201ENST00000475395 466 ntTSL 3 BASIC3.18□□□□□ -1.9
Retrieved 100 of 98,524 protein–RNA pairs in 82.4 ms