Protein–RNA interactions for Protein: O43365

HOXA3, Homeobox protein Hox-A3, humanhuman

Predicted RBP Predictions only

Length 443 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA3O43365 AC079584.2-201ENST00000548756 515 ntTSL 3 BASIC4.3□□□□□ -1.72
HOXA3O43365 LINC02286-201ENST00000552425 285 ntTSL 2 BASIC4.3□□□□□ -1.72
HOXA3O43365 AC106729.1-201ENST00000567777 466 ntTSL 3 BASIC4.3□□□□□ -1.72
HOXA3O43365 AC116003.1-202ENST00000579386 501 ntTSL 3 BASIC4.3□□□□□ -1.72
HOXA3O43365 MIR4716-201ENST00000579628 84 ntBASIC4.3□□□□□ -1.72
HOXA3O43365 MIR4775-201ENST00000581168 75 ntBASIC4.3□□□□□ -1.72
HOXA3O43365 MIR4512-201ENST00000583257 77 ntBASIC4.3□□□□□ -1.72
HOXA3O43365 AC096708.3-201ENST00000584226 559 ntTSL 2 BASIC4.3□□□□□ -1.72
HOXA3O43365 AC060780.2-201ENST00000589047 198 ntBASIC4.3□□□□□ -1.72
HOXA3O43365 RNU6-89P-201ENST00000606519 100 ntBASIC4.3□□□□□ -1.72
HOXA3O43365 IQCB2P-201ENST00000401788 1633 ntBASIC4.3□□□□□ -1.72
HOXA3O43365 NXPH1-205ENST00000602349 1953 ntBASIC4.3□□□□□ -1.72
HOXA3O43365 ADAM7-202ENST00000380789 3358 ntAPPRIS ALT2 TSL 5 BASIC4.3□□□□□ -1.72
HOXA3O43365 NT5C3A-202ENST00000381626 1909 ntAPPRIS ALT1 TSL 5 BASIC4.3□□□□□ -1.72
HOXA3O43365 AL359893.1-201ENST00000447628 1580 ntBASIC4.3□□□□□ -1.72
HOXA3O43365 SLC35A1-201ENST00000369552 1851 ntAPPRIS P1 TSL 1 (best) BASIC4.3□□□□□ -1.72
HOXA3O43365 EIF3E-201ENST00000220849 1543 ntAPPRIS P1 TSL 1 (best) BASIC4.3□□□□□ -1.72
HOXA3O43365 NAV2-AS5-201ENST00000528726 3307 ntTSL 1 (best) BASIC4.29□□□□□ -1.72
HOXA3O43365 OR51G2-202ENST00000641926 3326 ntAPPRIS P1 BASIC4.29□□□□□ -1.72
HOXA3O43365 DNAH8-201ENST00000327475 14360 ntAPPRIS P2 TSL 5 BASIC4.29□□□□□ -1.72
HOXA3O43365 PPEF1-201ENST00000349874 2687 ntTSL 5 BASIC4.29□□□□□ -1.72
HOXA3O43365 C12orf50-201ENST00000298699 1722 ntAPPRIS P1 TSL 2 BASIC4.29□□□□□ -1.72
HOXA3O43365 MOXD1-201ENST00000336749 2950 ntTSL 1 (best) BASIC4.29□□□□□ -1.72
HOXA3O43365 MAP9-208ENST00000515654 2044 ntTSL 5 BASIC4.29□□□□□ -1.72
HOXA3O43365 ATF2-201ENST00000264110 4176 ntTSL 1 (best) BASIC4.29□□□□□ -1.72
HOXA3O43365 OBSCN-205ENST00000422127 24060 ntTSL 5 BASIC4.29□□□□□ -1.72
HOXA3O43365 ZBED6-201ENST00000545588 7979 ntTSL 1 (best) BASIC4.29□□□□□ -1.72
HOXA3O43365 AC004972.1-201ENST00000623934 2209 ntBASIC4.29□□□□□ -1.72
HOXA3O43365 C2orf73-202ENST00000398634 1921 ntAPPRIS P1 TSL 1 (best) BASIC4.29□□□□□ -1.72
HOXA3O43365 OR8A1-203ENST00000641670 5709 ntAPPRIS P1 BASIC4.29□□□□□ -1.72
HOXA3O43365 PNPLA4-203ENST00000444736 2752 ntAPPRIS P1 TSL 4 BASIC4.29□□□□□ -1.72
HOXA3O43365 GPALPP1-201ENST00000357537 5368 ntTSL 1 (best) BASIC4.29□□□□□ -1.72
HOXA3O43365 ZNF525-202ENST00000474037 3890 ntAPPRIS P1 TSL 5 BASIC4.29□□□□□ -1.72
HOXA3O43365 MTRNR2L11-201ENST00000604646 1552 ntAPPRIS P1 BASIC4.29□□□□□ -1.72
HOXA3O43365 IBTK-206ENST00000503631 3560 ntTSL 1 (best) BASIC4.29□□□□□ -1.72
HOXA3O43365 GUCY1A3-201ENST00000296518 4400 ntAPPRIS P1 TSL 1 (best) BASIC4.29□□□□□ -1.72
HOXA3O43365 SMG1P4-204ENST00000523028 4131 ntBASIC4.29□□□□□ -1.72
HOXA3O43365 TATDN1-201ENST00000276692 1018 ntAPPRIS P1 TSL 1 (best) BASIC4.29□□□□□ -1.72
HOXA3O43365 AGR3-201ENST00000310398 749 ntAPPRIS P1 TSL 1 (best) BASIC4.29□□□□□ -1.72
HOXA3O43365 AC067945.1-201ENST00000342609 618 ntBASIC4.29□□□□□ -1.72
HOXA3O43365 Y_RNA.231-201ENST00000364358 102 ntBASIC4.29□□□□□ -1.72
HOXA3O43365 TSHB-202ENST00000369517 474 ntAPPRIS P1 TSL 1 (best) BASIC4.29□□□□□ -1.72
HOXA3O43365 SNORD51-201ENST00000384320 80 ntBASIC4.29□□□□□ -1.72
HOXA3O43365 RNU6-692P-201ENST00000384496 107 ntBASIC4.29□□□□□ -1.72
HOXA3O43365 RNU6-193P-201ENST00000410977 107 ntBASIC4.29□□□□□ -1.72
HOXA3O43365 NAP1L1P2-201ENST00000414182 1089 ntBASIC4.29□□□□□ -1.72
HOXA3O43365 LINC00276-201ENST00000417751 596 ntTSL 2 BASIC4.29□□□□□ -1.72
HOXA3O43365 AC011243.1-201ENST00000420184 415 ntTSL 3 BASIC4.29□□□□□ -1.72
HOXA3O43365 AL645937.1-202ENST00000421799 937 ntBASIC4.29□□□□□ -1.72
HOXA3O43365 OR2AS1P-201ENST00000427827 319 ntBASIC4.29□□□□□ -1.72
HOXA3O43365 PSMD10P3-201ENST00000437000 448 ntBASIC4.29□□□□□ -1.72
HOXA3O43365 AL162419.1-201ENST00000440674 873 ntTSL 1 (best) BASIC4.29□□□□□ -1.72
HOXA3O43365 HMGB3P9-201ENST00000441799 583 ntBASIC4.29□□□□□ -1.72
HOXA3O43365 BX546450.1-201ENST00000454307 482 ntTSL 2 BASIC4.29□□□□□ -1.72
HOXA3O43365 AC091685.2-201ENST00000454924 864 ntBASIC4.29□□□□□ -1.72
HOXA3O43365 RNU7-182P-201ENST00000459009 62 ntBASIC4.29□□□□□ -1.72
HOXA3O43365 RNU6ATAC28P-201ENST00000459249 118 ntBASIC4.29□□□□□ -1.72
HOXA3O43365 AC007547.1-201ENST00000462177 490 ntBASIC4.29□□□□□ -1.72
HOXA3O43365 RN7SL188P-201ENST00000469842 285 ntBASIC4.29□□□□□ -1.72
HOXA3O43365 GYPB-202ENST00000502664 521 ntTSL 1 (best) BASIC4.29□□□□□ -1.72
HOXA3O43365 LINC02491-201ENST00000504710 403 ntTSL 2 BASIC4.29□□□□□ -1.72
HOXA3O43365 AC116562.3-201ENST00000506136 177 ntBASIC4.29□□□□□ -1.72
HOXA3O43365 RNU7-51P-201ENST00000516560 62 ntBASIC4.29□□□□□ -1.72
HOXA3O43365 RN7SKP219-201ENST00000516825 296 ntBASIC4.29□□□□□ -1.72
HOXA3O43365 NARSP2-201ENST00000518524 679 ntBASIC4.29□□□□□ -1.72
HOXA3O43365 AC068587.5-201ENST00000528506 175 ntBASIC4.29□□□□□ -1.72
HOXA3O43365 AC110275.1-201ENST00000534420 623 ntAPPRIS P1 TSL 4 BASIC4.29□□□□□ -1.72
HOXA3O43365 AC024940.3-201ENST00000538551 316 ntBASIC4.29□□□□□ -1.72
HOXA3O43365 AL133153.1-201ENST00000557756 303 ntBASIC4.29□□□□□ -1.72
HOXA3O43365 AC103739.1-201ENST00000558389 474 ntTSL 3 BASIC4.29□□□□□ -1.72
HOXA3O43365 AC027130.1-201ENST00000564490 686 ntTSL 2 BASIC4.29□□□□□ -1.72
HOXA3O43365 OR1F2P-201ENST00000570470 933 ntBASIC4.29□□□□□ -1.72
HOXA3O43365 MIR4742-201ENST00000581069 85 ntBASIC4.29□□□□□ -1.72
HOXA3O43365 AC022154.1-203ENST00000594850 493 ntTSL 3 BASIC4.29□□□□□ -1.72
HOXA3O43365 AC113139.1-201ENST00000605049 239 ntBASIC4.29□□□□□ -1.72
HOXA3O43365 AC098617.1-203ENST00000609865 277 ntTSL 5 BASIC4.29□□□□□ -1.72
HOXA3O43365 AL049539.1-201ENST00000611964 459 ntBASIC4.29□□□□□ -1.72
HOXA3O43365 LINC00923-207ENST00000619015 505 ntTSL 5 BASIC4.29□□□□□ -1.72
HOXA3O43365 AC138058.1-201ENST00000620572 449 ntTSL 3 BASIC4.29□□□□□ -1.72
HOXA3O43365 C2orf27A-204ENST00000623058 969 ntBASIC4.29□□□□□ -1.72
HOXA3O43365 AC040168.1-201ENST00000623594 991 ntBASIC4.29□□□□□ -1.72
HOXA3O43365 AP001784.1-201ENST00000624107 428 ntBASIC4.29□□□□□ -1.72
HOXA3O43365 AL136313.1-201ENST00000624804 202 ntBASIC4.29□□□□□ -1.72
HOXA3O43365 AL596275.2-204ENST00000641628 552 ntBASIC4.29□□□□□ -1.72
HOXA3O43365 AL596275.2-206ENST00000641957 626 ntBASIC4.29□□□□□ -1.72
HOXA3O43365 EPHA4-202ENST00000409854 3454 ntTSL 1 (best) BASIC4.29□□□□□ -1.72
HOXA3O43365 C6orf10-205ENST00000527965 2076 ntAPPRIS ALT2 TSL 2 BASIC4.29□□□□□ -1.72
HOXA3O43365 MAPRE2-202ENST00000413393 4173 ntAPPRIS ALT1 TSL 5 BASIC4.29□□□□□ -1.72
HOXA3O43365 PCDH15-206ENST00000373965 9237 ntAPPRIS ALT2 TSL 5 BASIC4.29□□□□□ -1.72
HOXA3O43365 DTNA-202ENST00000283365 6522 ntTSL 5 BASIC4.29□□□□□ -1.72
HOXA3O43365 ZNF230-201ENST00000429154 4115 ntAPPRIS P1 TSL 1 (best) BASIC4.29□□□□□ -1.72
HOXA3O43365 AASDH-201ENST00000205214 3590 ntAPPRIS P1 TSL 1 (best) BASIC4.29□□□□□ -1.72
HOXA3O43365 CYP7A1-201ENST00000301645 2950 ntAPPRIS P1 TSL 1 (best) BASIC4.29□□□□□ -1.72
HOXA3O43365 VPS13D-214ENST00000620676 16320 ntAPPRIS P4 TSL 1 (best) BASIC4.29□□□□□ -1.72
HOXA3O43365 SLC12A6-216ENST00000560164 3744 ntTSL 2 BASIC4.29□□□□□ -1.72
HOXA3O43365 AC005332.5-201ENST00000591222 2919 ntBASIC4.28□□□□□ -1.72
HOXA3O43365 HGF-201ENST00000222390 5989 ntAPPRIS P3 TSL 1 (best) BASIC4.28□□□□□ -1.72
HOXA3O43365 AC112198.2-201ENST00000426589 6996 ntBASIC4.28□□□□□ -1.72
HOXA3O43365 ACADM-203ENST00000420607 1332 ntAPPRIS ALT1 TSL 1 (best) BASIC4.28□□□□□ -1.72
HOXA3O43365 DNTTIP2-202ENST00000436063 5897 ntAPPRIS P1 TSL 1 (best) BASIC4.28□□□□□ -1.72
Retrieved 100 of 98,524 protein–RNA pairs in 108.1 ms