Protein–RNA interactions for Protein: Q96MF4

CCDC140, Coiled-coil domain-containing protein 140, humanhuman

Predictions only

Length 163 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC140Q96MF4 AP005639.2-201ENST00000527592 928 ntBASIC4.54□□□□□ -1.68
CCDC140Q96MF4 AL132780.1-202ENST00000548322 591 ntTSL 4 BASIC4.54□□□□□ -1.68
CCDC140Q96MF4 AC090109.1-201ENST00000548885 819 ntTSL 3 BASIC4.54□□□□□ -1.68
CCDC140Q96MF4 DYNLL1P4-201ENST00000549314 266 ntBASIC4.54□□□□□ -1.68
CCDC140Q96MF4 LINC02406-201ENST00000553029 546 ntTSL 3 BASIC4.54□□□□□ -1.68
CCDC140Q96MF4 AL355922.1-201ENST00000555624 337 ntTSL 3 BASIC4.54□□□□□ -1.68
CCDC140Q96MF4 AC022035.1-201ENST00000579923 302 ntTSL 2 BASIC4.54□□□□□ -1.68
CCDC140Q96MF4 MIR3941-201ENST00000582572 103 ntBASIC4.54□□□□□ -1.68
CCDC140Q96MF4 AC100863.1-201ENST00000584843 560 ntTSL 4 BASIC4.54□□□□□ -1.68
CCDC140Q96MF4 LINC02210-208ENST00000585118 546 ntTSL 1 (best) BASIC4.54□□□□□ -1.68
CCDC140Q96MF4 AL136084.2-213ENST00000585704 690 ntTSL 5 BASIC4.54□□□□□ -1.68
CCDC140Q96MF4 ZNF528-211ENST00000598192 625 ntTSL 3 BASIC4.54□□□□□ -1.68
CCDC140Q96MF4 AL513327.3-201ENST00000602618 469 ntBASIC4.54□□□□□ -1.68
CCDC140Q96MF4 AC025857.2-201ENST00000602711 238 ntBASIC4.54□□□□□ -1.68
CCDC140Q96MF4 AC020910.3-201ENST00000603701 874 ntBASIC4.54□□□□□ -1.68
CCDC140Q96MF4 AC009597.2-201ENST00000604659 592 ntBASIC4.54□□□□□ -1.68
CCDC140Q96MF4 LINC00310-205ENST00000609062 863 ntTSL 5 BASIC4.54□□□□□ -1.68
CCDC140Q96MF4 RNU6ATAC35P-201ENST00000609276 444 ntBASIC4.54□□□□□ -1.68
CCDC140Q96MF4 AC040896.1-201ENST00000613819 479 ntBASIC4.54□□□□□ -1.68
CCDC140Q96MF4 AC024884.1-201ENST00000620583 399 ntBASIC4.54□□□□□ -1.68
CCDC140Q96MF4 AC097495.1-201ENST00000637675 546 ntAPPRIS P1 TSL 5 BASIC4.54□□□□□ -1.68
CCDC140Q96MF4 MTND5P42-201ENST00000637720 498 ntBASIC4.54□□□□□ -1.68
CCDC140Q96MF4 MCF2L2-202ENST00000414362 3031 ntTSL 2 BASIC4.54□□□□□ -1.68
CCDC140Q96MF4 PDE10A-203ENST00000539869 4401 ntAPPRIS ALT2 TSL 1 (best) BASIC4.54□□□□□ -1.68
CCDC140Q96MF4 CNTN1-208ENST00000551295 5557 ntAPPRIS P1 TSL 1 (best) BASIC4.54□□□□□ -1.68
CCDC140Q96MF4 KLHL28-202ENST00000396128 6545 ntAPPRIS P1 TSL 1 (best) BASIC4.54□□□□□ -1.68
CCDC140Q96MF4 STK3-216ENST00000523601 3107 ntTSL 2 BASIC4.54□□□□□ -1.68
CCDC140Q96MF4 TAX1BP1-202ENST00000396319 2892 ntAPPRIS P3 TSL 1 (best) BASIC4.54□□□□□ -1.68
CCDC140Q96MF4 DTHD1-205ENST00000507598 2606 ntTSL 1 (best) BASIC4.54□□□□□ -1.68
CCDC140Q96MF4 POLK-217ENST00000515295 1438 ntTSL 1 (best) BASIC4.54□□□□□ -1.68
CCDC140Q96MF4 RUFY3-202ENST00000381006 3098 ntAPPRIS P1 TSL 5 BASIC4.54□□□□□ -1.68
CCDC140Q96MF4 AC109811.1-201ENST00000512833 2807 ntTSL 1 (best) BASIC4.54□□□□□ -1.68
CCDC140Q96MF4 RNMT-206ENST00000589866 1879 ntAPPRIS P1 TSL 1 (best) BASIC4.54□□□□□ -1.68
CCDC140Q96MF4 LRRC63-203ENST00000595396 2327 ntAPPRIS P2 TSL 5 BASIC4.54□□□□□ -1.68
CCDC140Q96MF4 PPP2R5E-202ENST00000422769 3478 ntTSL 2 BASIC4.53□□□□□ -1.68
CCDC140Q96MF4 FYB1-204ENST00000505428 2789 ntAPPRIS ALT2 TSL 1 (best) BASIC4.53□□□□□ -1.68
CCDC140Q96MF4 LINC00824-203ENST00000520206 2055 ntTSL 1 (best) BASIC4.53□□□□□ -1.68
CCDC140Q96MF4 PRO1804-201ENST00000623780 2050 ntBASIC4.53□□□□□ -1.68
CCDC140Q96MF4 RCAN2-201ENST00000306764 3240 ntTSL 1 (best) BASIC4.53□□□□□ -1.68
CCDC140Q96MF4 FASTKD2-201ENST00000236980 3188 ntAPPRIS P1 TSL 1 (best) BASIC4.53□□□□□ -1.68
CCDC140Q96MF4 UQCC1-208ENST00000397554 3638 ntTSL 2 BASIC4.53□□□□□ -1.68
CCDC140Q96MF4 MMRN1-201ENST00000264790 4967 ntAPPRIS P1 TSL 1 (best) BASIC4.53□□□□□ -1.68
CCDC140Q96MF4 EXOC1-201ENST00000346134 3357 ntAPPRIS P4 TSL 2 BASIC4.53□□□□□ -1.68
CCDC140Q96MF4 ZBTB38-222ENST00000637056 6056 ntAPPRIS P1 TSL 5 BASIC4.53□□□□□ -1.68
CCDC140Q96MF4 KCNT2-203ENST00000451324 3146 ntTSL 1 (best) BASIC4.53□□□□□ -1.68
CCDC140Q96MF4 OAZ3-204ENST00000479764 3789 ntTSL 5 BASIC4.53□□□□□ -1.68
CCDC140Q96MF4 RGPD2-203ENST00000638730 5306 ntAPPRIS ALT2 TSL 5 BASIC4.53□□□□□ -1.68
CCDC140Q96MF4 SLC12A6-204ENST00000397707 4194 ntTSL 1 (best) BASIC4.53□□□□□ -1.68
CCDC140Q96MF4 DST-205ENST00000370765 8999 ntTSL 1 (best) BASIC4.53□□□□□ -1.68
CCDC140Q96MF4 GALNT11-203ENST00000422997 2371 ntTSL 5 BASIC4.53□□□□□ -1.68
CCDC140Q96MF4 ADGRL3-218ENST00000514996 4731 ntAPPRIS ALT2 TSL 5 BASIC4.53□□□□□ -1.68
CCDC140Q96MF4 TAS2R3-201ENST00000247879 1101 ntAPPRIS P1 BASIC4.53□□□□□ -1.68
CCDC140Q96MF4 OR52B3P-201ENST00000314715 928 ntBASIC4.53□□□□□ -1.68
CCDC140Q96MF4 NDRG3-201ENST00000349004 2964 ntAPPRIS P4 TSL 1 (best) BASIC4.53□□□□□ -1.68
CCDC140Q96MF4 RNA5SP477-201ENST00000362639 119 ntBASIC4.53□□□□□ -1.68
CCDC140Q96MF4 RNA5SP500-201ENST00000364486 119 ntBASIC4.53□□□□□ -1.68
CCDC140Q96MF4 RN7SKP78-201ENST00000364711 318 ntBASIC4.53□□□□□ -1.68
CCDC140Q96MF4 TCEAL7-202ENST00000372666 852 ntAPPRIS P1 TSL 2 BASIC4.53□□□□□ -1.68
CCDC140Q96MF4 AL080315.1-201ENST00000406055 466 ntBASIC4.53□□□□□ -1.68
CCDC140Q96MF4 RN7SKP158-201ENST00000410453 326 ntBASIC4.53□□□□□ -1.68
CCDC140Q96MF4 LINC01980-201ENST00000414382 543 ntTSL 4 BASIC4.53□□□□□ -1.68
CCDC140Q96MF4 PDSS1P1-201ENST00000422953 1114 ntBASIC4.53□□□□□ -1.68
CCDC140Q96MF4 MTATP6P4-201ENST00000427725 675 ntBASIC4.53□□□□□ -1.68
CCDC140Q96MF4 TSSK4-203ENST00000428351 576 ntTSL 2 BASIC4.53□□□□□ -1.68
CCDC140Q96MF4 AL078601.2-201ENST00000429444 474 ntTSL 2 BASIC4.53□□□□□ -1.68
CCDC140Q96MF4 AC079799.1-201ENST00000430696 331 ntTSL 3 BASIC4.53□□□□□ -1.68
CCDC140Q96MF4 ZFY-AS1-202ENST00000431145 419 ntTSL 3 BASIC4.53□□□□□ -1.68
CCDC140Q96MF4 AP000943.1-201ENST00000438416 712 ntTSL 3 BASIC4.53□□□□□ -1.68
CCDC140Q96MF4 AL356859.1-201ENST00000449180 414 ntTSL 5 BASIC4.53□□□□□ -1.68
CCDC140Q96MF4 FRG2FP-204ENST00000453982 852 ntBASIC4.53□□□□□ -1.68
CCDC140Q96MF4 RPL30P15-201ENST00000457129 321 ntBASIC4.53□□□□□ -1.68
CCDC140Q96MF4 RNU7-167P-201ENST00000459160 62 ntBASIC4.53□□□□□ -1.68
CCDC140Q96MF4 RNU1-88P-201ENST00000459274 128 ntBASIC4.53□□□□□ -1.68
CCDC140Q96MF4 AL122020.1-201ENST00000472287 459 ntBASIC4.53□□□□□ -1.68
CCDC140Q96MF4 IGBP1P4-201ENST00000503202 879 ntBASIC4.53□□□□□ -1.68
CCDC140Q96MF4 AC104304.1-201ENST00000505797 291 ntAPPRIS P1 TSL 3 BASIC4.53□□□□□ -1.68
CCDC140Q96MF4 MLLT10P2-201ENST00000506434 249 ntBASIC4.53□□□□□ -1.68
CCDC140Q96MF4 HMGB3P15-201ENST00000507326 574 ntBASIC4.53□□□□□ -1.68
CCDC140Q96MF4 BMPR1B-AS1-201ENST00000510795 511 ntTSL 3 BASIC4.53□□□□□ -1.68
CCDC140Q96MF4 AC079160.1-201ENST00000513489 739 ntTSL 1 (best) BASIC4.53□□□□□ -1.68
CCDC140Q96MF4 Y_RNA.667-201ENST00000516212 107 ntBASIC4.53□□□□□ -1.68
CCDC140Q96MF4 ATPAF1-210ENST00000532925 998 ntTSL 2 BASIC4.53□□□□□ -1.68
CCDC140Q96MF4 AC022081.1-201ENST00000537327 433 ntTSL 2 BASIC4.53□□□□□ -1.68
CCDC140Q96MF4 DIAPH2-AS1-203ENST00000542084 450 ntTSL 5 BASIC4.53□□□□□ -1.68
CCDC140Q96MF4 AC090115.3-201ENST00000553218 849 ntBASIC4.53□□□□□ -1.68
CCDC140Q96MF4 AC012182.1-201ENST00000570133 895 ntBASIC4.53□□□□□ -1.68
CCDC140Q96MF4 FAM60BP-201ENST00000578364 658 ntBASIC4.53□□□□□ -1.68
CCDC140Q96MF4 AC005288.1-201ENST00000582842 860 ntTSL 2 BASIC4.53□□□□□ -1.68
CCDC140Q96MF4 AP001972.3-202ENST00000603012 375 ntTSL 3 BASIC4.53□□□□□ -1.68
CCDC140Q96MF4 AC124303.1-201ENST00000605703 360 ntBASIC4.53□□□□□ -1.68
CCDC140Q96MF4 AL662844.3-201ENST00000606909 517 ntTSL 5 BASIC4.53□□□□□ -1.68
CCDC140Q96MF4 AL355365.1-201ENST00000616480 294 ntBASIC4.53□□□□□ -1.68
CCDC140Q96MF4 AL031665.2-201ENST00000620712 209 ntTSL 3 BASIC4.53□□□□□ -1.68
CCDC140Q96MF4 PCBP1-AS1-282ENST00000625783 826 ntTSL 5 BASIC4.53□□□□□ -1.68
CCDC140Q96MF4 CPS1-IT1-201ENST00000628368 2306 ntBASIC4.53□□□□□ -1.68
CCDC140Q96MF4 FAM205A-201ENST00000378788 4225 ntAPPRIS P1 TSL 2 BASIC4.53□□□□□ -1.68
CCDC140Q96MF4 SEMA3A-201ENST00000265362 8225 ntAPPRIS P1 TSL 1 (best) BASIC4.53□□□□□ -1.68
CCDC140Q96MF4 AC092747.4-201ENST00000620519 1861 ntBASIC4.53□□□□□ -1.68
CCDC140Q96MF4 IGSF11-AS1-201ENST00000477009 1604 ntTSL 2 BASIC4.53□□□□□ -1.68
CCDC140Q96MF4 ADGRL3-210ENST00000508946 4758 ntAPPRIS ALT2 TSL 5 BASIC4.53□□□□□ -1.68
Retrieved 100 of 98,524 protein–RNA pairs in 115.5 ms