Protein–RNA interactions for Protein: Q96CF2

CHMP4C, Charged multivesicular body protein 4c, humanhuman

Predictions only

Length 233 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4CQ96CF2 MIR6715B-201ENST00000637172 77 ntBASIC5.09□□□□□ -1.59
CHMP4CQ96CF2 PANK1-202ENST00000322191 2513 ntTSL 1 (best) BASIC5.09□□□□□ -1.59
CHMP4CQ96CF2 MGAT4C-202ENST00000548651 2159 ntAPPRIS P1 TSL 5 BASIC5.09□□□□□ -1.59
CHMP4CQ96CF2 NLGN1-206ENST00000457714 8242 ntAPPRIS P1 TSL 1 (best) BASIC5.09□□□□□ -1.59
CHMP4CQ96CF2 DMXL2-202ENST00000449909 7465 ntAPPRIS ALT2 TSL 1 (best) BASIC5.09□□□□□ -1.6
CHMP4CQ96CF2 MNDA-201ENST00000368141 1752 ntAPPRIS P1 TSL 1 (best) BASIC5.09□□□□□ -1.6
CHMP4CQ96CF2 RGS21-201ENST00000417209 1794 ntAPPRIS P1 TSL 1 (best) BASIC5.09□□□□□ -1.6
CHMP4CQ96CF2 AC097714.1-201ENST00000511272 1647 ntBASIC5.08□□□□□ -1.6
CHMP4CQ96CF2 AL359893.1-201ENST00000447628 1580 ntBASIC5.08□□□□□ -1.6
CHMP4CQ96CF2 MYB-213ENST00000525369 2866 ntTSL 1 (best) BASIC5.08□□□□□ -1.6
CHMP4CQ96CF2 ATF2-221ENST00000538946 1325 ntTSL 5 BASIC5.08□□□□□ -1.6
CHMP4CQ96CF2 AC025750.1-201ENST00000399891 379 ntBASIC5.08□□□□□ -1.6
CHMP4CQ96CF2 MTND4LP20-201ENST00000402379 270 ntBASIC5.08□□□□□ -1.6
CHMP4CQ96CF2 MIR1179-201ENST00000408703 91 ntBASIC5.08□□□□□ -1.6
CHMP4CQ96CF2 RPL31P45-201ENST00000419532 356 ntBASIC5.08□□□□□ -1.6
CHMP4CQ96CF2 AL161640.1-201ENST00000429507 390 ntTSL 2 BASIC5.08□□□□□ -1.6
CHMP4CQ96CF2 AL596220.1-202ENST00000429768 314 ntTSL 3 BASIC5.08□□□□□ -1.6
CHMP4CQ96CF2 LINC00392-201ENST00000430033 557 ntTSL 3 BASIC5.08□□□□□ -1.6
CHMP4CQ96CF2 LARP1BP3-201ENST00000437229 869 ntBASIC5.08□□□□□ -1.6
CHMP4CQ96CF2 COX6CP2-201ENST00000444980 225 ntBASIC5.08□□□□□ -1.6
CHMP4CQ96CF2 MTCO1P27-201ENST00000448269 226 ntBASIC5.08□□□□□ -1.6
CHMP4CQ96CF2 AL157359.1-201ENST00000449840 424 ntTSL 3 BASIC5.08□□□□□ -1.6
CHMP4CQ96CF2 RPL23AP81-201ENST00000455252 467 ntBASIC5.08□□□□□ -1.6
CHMP4CQ96CF2 SUMO2P2-201ENST00000456482 255 ntBASIC5.08□□□□□ -1.6
CHMP4CQ96CF2 AL672167.3-201ENST00000465951 960 ntBASIC5.08□□□□□ -1.6
CHMP4CQ96CF2 RPL31P50-201ENST00000471002 296 ntBASIC5.08□□□□□ -1.6
CHMP4CQ96CF2 RPL21P103-201ENST00000479921 488 ntBASIC5.08□□□□□ -1.6
CHMP4CQ96CF2 AC068724.1-201ENST00000487100 792 ntBASIC5.08□□□□□ -1.6
CHMP4CQ96CF2 OR5H5P-201ENST00000503164 928 ntBASIC5.08□□□□□ -1.6
CHMP4CQ96CF2 AC093864.1-201ENST00000504555 745 ntTSL 5 BASIC5.08□□□□□ -1.6
CHMP4CQ96CF2 AC017037.1-201ENST00000508460 471 ntBASIC5.08□□□□□ -1.6
CHMP4CQ96CF2 POU5F1P7-201ENST00000508759 541 ntBASIC5.08□□□□□ -1.6
CHMP4CQ96CF2 MTCO3P44-201ENST00000510977 541 ntBASIC5.08□□□□□ -1.6
CHMP4CQ96CF2 COX6CP8-201ENST00000522620 226 ntBASIC5.08□□□□□ -1.6
CHMP4CQ96CF2 KIRREL3-AS2-201ENST00000532988 492 ntTSL 1 (best) BASIC5.08□□□□□ -1.6
CHMP4CQ96CF2 PARPBP-209ENST00000537257 976 ntTSL 1 (best) BASIC5.08□□□□□ -1.6
CHMP4CQ96CF2 AC023161.2-201ENST00000551218 780 ntBASIC5.08□□□□□ -1.6
CHMP4CQ96CF2 AL355773.1-201ENST00000554458 459 ntTSL 3 BASIC5.08□□□□□ -1.6
CHMP4CQ96CF2 AL109766.1-201ENST00000555080 552 ntBASIC5.08□□□□□ -1.6
CHMP4CQ96CF2 AP001180.3-201ENST00000582221 145 ntBASIC5.08□□□□□ -1.6
CHMP4CQ96CF2 AC020910.2-201ENST00000603635 610 ntBASIC5.08□□□□□ -1.6
CHMP4CQ96CF2 AL139395.1-201ENST00000603662 160 ntBASIC5.08□□□□□ -1.6
CHMP4CQ96CF2 ACTR3BP1-201ENST00000605584 1247 ntBASIC5.08□□□□□ -1.6
CHMP4CQ96CF2 MIR6716-201ENST00000613413 80 ntBASIC5.08□□□□□ -1.6
CHMP4CQ96CF2 AC011939.3-201ENST00000613686 466 ntBASIC5.08□□□□□ -1.6
CHMP4CQ96CF2 AL023881.1-201ENST00000621088 301 ntBASIC5.08□□□□□ -1.6
CHMP4CQ96CF2 AL356121.2-201ENST00000624715 780 ntBASIC5.08□□□□□ -1.6
CHMP4CQ96CF2 LINC01002-227ENST00000633363 541 ntTSL 1 (best) BASIC5.08□□□□□ -1.6
CHMP4CQ96CF2 ORC3-201ENST00000257789 2501 ntAPPRIS P3 TSL 1 (best) BASIC5.08□□□□□ -1.6
CHMP4CQ96CF2 PABPC1P9-201ENST00000426076 1612 ntBASIC5.08□□□□□ -1.6
CHMP4CQ96CF2 LINC02475-202ENST00000512678 2622 ntTSL 1 (best) BASIC5.08□□□□□ -1.6
CHMP4CQ96CF2 CDH9-201ENST00000231021 3079 ntAPPRIS P1 TSL 1 (best) BASIC5.08□□□□□ -1.6
CHMP4CQ96CF2 OXR1-201ENST00000297447 1944 ntTSL 1 (best) BASIC5.07□□□□□ -1.6
CHMP4CQ96CF2 LRRC49-222ENST00000560158 1898 ntTSL 5 BASIC5.07□□□□□ -1.6
CHMP4CQ96CF2 OTUD4P1-201ENST00000237841 3067 ntBASIC5.07□□□□□ -1.6
CHMP4CQ96CF2 MIR383-201ENST00000362257 73 ntBASIC5.07□□□□□ -1.6
CHMP4CQ96CF2 Y_RNA.51-201ENST00000362725 102 ntBASIC5.07□□□□□ -1.6
CHMP4CQ96CF2 RNU6-777P-201ENST00000364265 104 ntBASIC5.07□□□□□ -1.6
CHMP4CQ96CF2 LZIC-201ENST00000377213 945 ntAPPRIS P1 TSL 1 (best) BASIC5.07□□□□□ -1.6
CHMP4CQ96CF2 RNU6-356P-201ENST00000384140 107 ntBASIC5.07□□□□□ -1.6
CHMP4CQ96CF2 SNORD66.1-201ENST00000391230 76 ntBASIC5.07□□□□□ -1.6
CHMP4CQ96CF2 LAP3P1-201ENST00000403648 294 ntBASIC5.07□□□□□ -1.6
CHMP4CQ96CF2 AC109780.2-201ENST00000413467 845 ntBASIC5.07□□□□□ -1.6
CHMP4CQ96CF2 BTF3L4P1-201ENST00000413813 468 ntBASIC5.07□□□□□ -1.6
CHMP4CQ96CF2 AC004946.1-201ENST00000421825 751 ntTSL 3 BASIC5.07□□□□□ -1.6
CHMP4CQ96CF2 AL389915.1-201ENST00000422463 466 ntBASIC5.07□□□□□ -1.6
CHMP4CQ96CF2 EIF1AX-AS1-201ENST00000424026 378 ntTSL 5 BASIC5.07□□□□□ -1.6
CHMP4CQ96CF2 AC003084.1-201ENST00000427030 435 ntTSL 5 BASIC5.07□□□□□ -1.6
CHMP4CQ96CF2 PSMA6P3-201ENST00000428242 164 ntBASIC5.07□□□□□ -1.6
CHMP4CQ96CF2 AL512649.1-201ENST00000428997 581 ntBASIC5.07□□□□□ -1.6
CHMP4CQ96CF2 LINC01850-201ENST00000429916 357 ntTSL 3 BASIC5.07□□□□□ -1.6
CHMP4CQ96CF2 AL365184.2-201ENST00000431139 435 ntBASIC5.07□□□□□ -1.6
CHMP4CQ96CF2 OFD1P13Y-201ENST00000431179 1232 ntBASIC5.07□□□□□ -1.6
CHMP4CQ96CF2 CKS1BP5-201ENST00000434172 273 ntBASIC5.07□□□□□ -1.6
CHMP4CQ96CF2 HLA-N-201ENST00000437516 135 ntBASIC5.07□□□□□ -1.6
CHMP4CQ96CF2 LSM1P1-201ENST00000438629 273 ntBASIC5.07□□□□□ -1.6
CHMP4CQ96CF2 AL121957.1-201ENST00000441532 338 ntTSL 2 BASIC5.07□□□□□ -1.6
CHMP4CQ96CF2 BMI1P1-201ENST00000445879 941 ntBASIC5.07□□□□□ -1.6
CHMP4CQ96CF2 AL360221.1-201ENST00000445989 335 ntBASIC5.07□□□□□ -1.6
CHMP4CQ96CF2 AC002381.1-201ENST00000447049 280 ntBASIC5.07□□□□□ -1.6
CHMP4CQ96CF2 UQCRHP4-201ENST00000471686 272 ntBASIC5.07□□□□□ -1.6
CHMP4CQ96CF2 AC104563.1-201ENST00000476147 376 ntBASIC5.07□□□□□ -1.6
CHMP4CQ96CF2 AL365356.5-201ENST00000478294 697 ntTSL 2 BASIC5.07□□□□□ -1.6
CHMP4CQ96CF2 AC091167.1-201ENST00000492017 396 ntBASIC5.07□□□□□ -1.6
CHMP4CQ96CF2 BNIP3P41-201ENST00000503774 571 ntBASIC5.07□□□□□ -1.6
CHMP4CQ96CF2 AC021678.1-201ENST00000505195 936 ntBASIC5.07□□□□□ -1.6
CHMP4CQ96CF2 AC097478.1-202ENST00000508021 567 ntTSL 4 BASIC5.07□□□□□ -1.6
CHMP4CQ96CF2 AL592156.1-201ENST00000508758 304 ntBASIC5.07□□□□□ -1.6
CHMP4CQ96CF2 AC091965.2-201ENST00000512324 613 ntBASIC5.07□□□□□ -1.6
CHMP4CQ96CF2 RNA5SP49-201ENST00000516450 115 ntBASIC5.07□□□□□ -1.6
CHMP4CQ96CF2 IGLV3-26-201ENST00000520756 302 ntBASIC5.07□□□□□ -1.6
CHMP4CQ96CF2 OR5M10-201ENST00000526812 1052 ntAPPRIS P1 BASIC5.07□□□□□ -1.6
CHMP4CQ96CF2 AP004247.1-201ENST00000531556 1289 ntBASIC5.07□□□□□ -1.6
CHMP4CQ96CF2 AC013828.2-201ENST00000532487 235 ntBASIC5.07□□□□□ -1.6
CHMP4CQ96CF2 AC024224.1-201ENST00000538284 609 ntBASIC5.07□□□□□ -1.6
CHMP4CQ96CF2 AC006064.5-201ENST00000541782 248 ntBASIC5.07□□□□□ -1.6
CHMP4CQ96CF2 LINC02459-201ENST00000551761 474 ntTSL 3 BASIC5.07□□□□□ -1.6
CHMP4CQ96CF2 AC076968.1-201ENST00000566418 429 ntTSL 5 BASIC5.07□□□□□ -1.6
CHMP4CQ96CF2 AC011477.2-201ENST00000590697 921 ntTSL 2 BASIC5.07□□□□□ -1.6
CHMP4CQ96CF2 MIR7515HG-243ENST00000591400 1067 ntTSL 5 BASIC5.07□□□□□ -1.6
Retrieved 100 of 98,524 protein–RNA pairs in 79.5 ms