Protein–RNA interactions for Protein: Q8NEL0

CCDC54, Coiled-coil domain-containing protein 54, humanhuman

Predictions only

Length 328 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC54Q8NEL0 BNIP3P31-201ENST00000604515 566 ntBASIC2.96□□□□□ -1.94
CCDC54Q8NEL0 AP002802.2-201ENST00000605877 235 ntBASIC2.96□□□□□ -1.94
CCDC54Q8NEL0 AL356321.1-201ENST00000621360 228 ntBASIC2.96□□□□□ -1.94
CCDC54Q8NEL0 AL590240.3-201ENST00000621416 943 ntBASIC2.96□□□□□ -1.94
CCDC54Q8NEL0 AC007527.2-201ENST00000621825 546 ntTSL 5 BASIC2.96□□□□□ -1.94
CCDC54Q8NEL0 AL138955.1-201ENST00000622881 1040 ntBASIC2.96□□□□□ -1.94
CCDC54Q8NEL0 AP003171.2-202ENST00000634657 355 ntTSL 5 BASIC2.96□□□□□ -1.94
CCDC54Q8NEL0 CACNB4-238ENST00000636901 7706 ntTSL 5 BASIC2.96□□□□□ -1.94
CCDC54Q8NEL0 SLC38A9-203ENST00000416547 2236 ntTSL 5 BASIC2.96□□□□□ -1.94
CCDC54Q8NEL0 SLC27A2-203ENST00000544960 2025 ntTSL 2 BASIC2.95□□□□□ -1.94
CCDC54Q8NEL0 OXR1-205ENST00000442977 2956 ntTSL 2 BASIC2.95□□□□□ -1.94
CCDC54Q8NEL0 AC004925.1-201ENST00000624256 2706 ntBASIC2.95□□□□□ -1.94
CCDC54Q8NEL0 FER-202ENST00000438717 1531 ntTSL 2 BASIC2.95□□□□□ -1.94
CCDC54Q8NEL0 AGTR1-205ENST00000461609 1545 ntAPPRIS P1 TSL 3 BASIC2.95□□□□□ -1.94
CCDC54Q8NEL0 AP001350.1-201ENST00000601906 1524 ntBASIC2.95□□□□□ -1.94
CCDC54Q8NEL0 LRRC39-204ENST00000620882 1951 ntTSL 5 BASIC2.95□□□□□ -1.94
CCDC54Q8NEL0 IL36B-201ENST00000259213 1186 ntTSL 1 (best) BASIC2.95□□□□□ -1.94
CCDC54Q8NEL0 TFPI-202ENST00000339091 1088 ntTSL 1 (best) BASIC2.95□□□□□ -1.94
CCDC54Q8NEL0 RNU1-101P-201ENST00000391171 127 ntBASIC2.95□□□□□ -1.94
CCDC54Q8NEL0 FABP12P1-201ENST00000401911 322 ntBASIC2.95□□□□□ -1.94
CCDC54Q8NEL0 MTCO2P31-201ENST00000402702 684 ntBASIC2.95□□□□□ -1.94
CCDC54Q8NEL0 AL355143.1-201ENST00000407101 841 ntBASIC2.95□□□□□ -1.94
CCDC54Q8NEL0 CoTC_ribozyme.1-201ENST00000408104 192 ntBASIC2.95□□□□□ -1.94
CCDC54Q8NEL0 AL669831.5-220ENST00000412115 581 ntTSL 3 BASIC2.95□□□□□ -1.94
CCDC54Q8NEL0 AL136133.1-201ENST00000413694 376 ntBASIC2.95□□□□□ -1.94
CCDC54Q8NEL0 RPS7P9-201ENST00000414704 586 ntBASIC2.95□□□□□ -1.94
CCDC54Q8NEL0 AC093157.1-203ENST00000416329 713 ntTSL 5 BASIC2.95□□□□□ -1.94
CCDC54Q8NEL0 AL590783.1-201ENST00000424138 456 ntTSL 2 BASIC2.95□□□□□ -1.94
CCDC54Q8NEL0 LAMTOR3P1-201ENST00000428620 370 ntBASIC2.95□□□□□ -1.94
CCDC54Q8NEL0 AC004975.1-201ENST00000428733 208 ntBASIC2.95□□□□□ -1.94
CCDC54Q8NEL0 AP000477.1-202ENST00000434859 847 ntTSL 3 BASIC2.95□□□□□ -1.94
CCDC54Q8NEL0 AC002465.1-201ENST00000436097 349 ntTSL 2 BASIC2.95□□□□□ -1.94
CCDC54Q8NEL0 AC099063.1-201ENST00000437128 324 ntTSL 5 BASIC2.95□□□□□ -1.94
CCDC54Q8NEL0 AC009969.1-201ENST00000438726 172 ntBASIC2.95□□□□□ -1.94
CCDC54Q8NEL0 AC010157.1-201ENST00000440589 527 ntTSL 4 BASIC2.95□□□□□ -1.94
CCDC54Q8NEL0 MRPL42P4-201ENST00000453267 443 ntBASIC2.95□□□□□ -1.94
CCDC54Q8NEL0 ASH1L-IT1-201ENST00000458371 448 ntTSL 5 BASIC2.95□□□□□ -1.94
CCDC54Q8NEL0 CFAP44-AS1-201ENST00000473329 396 ntTSL 2 BASIC2.95□□□□□ -1.94
CCDC54Q8NEL0 AC108860.1-201ENST00000484521 383 ntBASIC2.95□□□□□ -1.94
CCDC54Q8NEL0 KCTD9P5-201ENST00000504141 1170 ntBASIC2.95□□□□□ -1.94
CCDC54Q8NEL0 AC008243.1-202ENST00000506527 481 ntTSL 5 BASIC2.95□□□□□ -1.94
CCDC54Q8NEL0 MTCO2P32-201ENST00000514865 403 ntBASIC2.95□□□□□ -1.94
CCDC54Q8NEL0 NAT2-202ENST00000520116 716 ntTSL 3 BASIC2.95□□□□□ -1.94
CCDC54Q8NEL0 AP001207.1-201ENST00000524051 481 ntBASIC2.95□□□□□ -1.94
CCDC54Q8NEL0 AF233439.1-201ENST00000526235 401 ntTSL 3 BASIC2.95□□□□□ -1.94
CCDC54Q8NEL0 AC103843.2-201ENST00000530523 682 ntBASIC2.95□□□□□ -1.94
CCDC54Q8NEL0 AL035078.2-201ENST00000533832 326 ntTSL 3 BASIC2.95□□□□□ -1.94
CCDC54Q8NEL0 AC087242.1-201ENST00000536931 572 ntTSL 4 BASIC2.95□□□□□ -1.94
CCDC54Q8NEL0 AC009396.1-201ENST00000553628 1079 ntTSL 2 BASIC2.95□□□□□ -1.94
CCDC54Q8NEL0 AC007495.1-203ENST00000569025 888 ntTSL 5 BASIC2.95□□□□□ -1.94
CCDC54Q8NEL0 AC126365.2-201ENST00000580630 379 ntBASIC2.95□□□□□ -1.94
CCDC54Q8NEL0 LINC01894-201ENST00000580984 487 ntTSL 2 BASIC2.95□□□□□ -1.94
CCDC54Q8NEL0 PRKCQ-AS1-207ENST00000607996 531 ntTSL 5 BASIC2.95□□□□□ -1.94
CCDC54Q8NEL0 IL33-205ENST00000611532 757 ntTSL 1 (best) BASIC2.95□□□□□ -1.94
CCDC54Q8NEL0 U4.6-201ENST00000621618 127 ntBASIC2.95□□□□□ -1.94
CCDC54Q8NEL0 ATXN3L-202ENST00000622204 837 ntTSL 5 BASIC2.95□□□□□ -1.94
CCDC54Q8NEL0 AC012594.1-272ENST00000625790 710 ntTSL 5 BASIC2.95□□□□□ -1.94
CCDC54Q8NEL0 APAF1-208ENST00000549007 3492 ntTSL 1 (best) BASIC2.95□□□□□ -1.94
CCDC54Q8NEL0 AC100800.1-201ENST00000524252 2054 ntTSL 1 (best) BASIC2.95□□□□□ -1.94
CCDC54Q8NEL0 OR9G4-204ENST00000641668 2608 ntAPPRIS P1 BASIC2.95□□□□□ -1.94
CCDC54Q8NEL0 GNAI3-201ENST00000369851 27174 ntAPPRIS P1 TSL 1 (best) BASIC2.95□□□□□ -1.94
CCDC54Q8NEL0 TUBD1-214ENST00000592426 1460 ntAPPRIS P1 TSL 1 (best) BASIC2.95□□□□□ -1.94
CCDC54Q8NEL0 DTHD1-205ENST00000507598 2606 ntTSL 1 (best) BASIC2.94□□□□□ -1.94
CCDC54Q8NEL0 OR2B2-201ENST00000303324 1212 ntAPPRIS P1 BASIC2.94□□□□□ -1.94
CCDC54Q8NEL0 OR10A7-201ENST00000326258 951 ntAPPRIS P1 BASIC2.94□□□□□ -1.94
CCDC54Q8NEL0 DEFB108B-201ENST00000328698 222 ntAPPRIS P1 TSL 1 (best) BASIC2.94□□□□□ -1.94
CCDC54Q8NEL0 RNU6-839P-201ENST00000363347 108 ntBASIC2.94□□□□□ -1.94
CCDC54Q8NEL0 RNU6-707P-201ENST00000364647 95 ntBASIC2.94□□□□□ -1.94
CCDC54Q8NEL0 RNU6-629P-201ENST00000384061 103 ntBASIC2.94□□□□□ -1.94
CCDC54Q8NEL0 RPL21P17-201ENST00000397467 475 ntBASIC2.94□□□□□ -1.94
CCDC54Q8NEL0 Z93403.1-201ENST00000411879 895 ntTSL 5 BASIC2.94□□□□□ -1.94
CCDC54Q8NEL0 Z99755.1-201ENST00000414048 380 ntBASIC2.94□□□□□ -1.94
CCDC54Q8NEL0 BTF3P8-201ENST00000414577 526 ntBASIC2.94□□□□□ -1.94
CCDC54Q8NEL0 NDUFB4P5-201ENST00000415445 361 ntBASIC2.94□□□□□ -1.94
CCDC54Q8NEL0 CBLL1-202ENST00000415884 804 ntTSL 5 BASIC2.94□□□□□ -1.94
CCDC54Q8NEL0 MTCYBP24-201ENST00000420387 1106 ntBASIC2.94□□□□□ -1.94
CCDC54Q8NEL0 EBLN1-201ENST00000422359 1208 ntAPPRIS P1 BASIC2.94□□□□□ -1.94
CCDC54Q8NEL0 AC233981.1-201ENST00000423224 461 ntBASIC2.94□□□□□ -1.94
CCDC54Q8NEL0 RAC1P8-201ENST00000427086 527 ntBASIC2.94□□□□□ -1.94
CCDC54Q8NEL0 BX890604.2-201ENST00000427883 474 ntBASIC2.94□□□□□ -1.94
CCDC54Q8NEL0 AL122010.1-201ENST00000429293 720 ntTSL 2 BASIC2.94□□□□□ -1.94
CCDC54Q8NEL0 AL161640.1-201ENST00000429507 390 ntTSL 2 BASIC2.94□□□□□ -1.94
CCDC54Q8NEL0 AC005345.1-201ENST00000431868 217 ntBASIC2.94□□□□□ -1.94
CCDC54Q8NEL0 AC005208.1-201ENST00000435112 599 ntTSL 3 BASIC2.94□□□□□ -1.94
CCDC54Q8NEL0 RPL23AP22-201ENST00000437556 453 ntBASIC2.94□□□□□ -1.94
CCDC54Q8NEL0 AL050349.1-201ENST00000441029 401 ntTSL 2 BASIC2.94□□□□□ -1.94
CCDC54Q8NEL0 RPS26P56-201ENST00000444468 240 ntBASIC2.94□□□□□ -1.94
CCDC54Q8NEL0 RBMY2UP-201ENST00000453474 324 ntBASIC2.94□□□□□ -1.94
CCDC54Q8NEL0 GAPDHP39-201ENST00000481866 979 ntBASIC2.94□□□□□ -1.94
CCDC54Q8NEL0 AL365273.2-201ENST00000491114 492 ntAPPRIS P1 TSL 5 BASIC2.94□□□□□ -1.94
CCDC54Q8NEL0 AC093663.1-201ENST00000497190 394 ntBASIC2.94□□□□□ -1.94
CCDC54Q8NEL0 SAR1B-204ENST00000502539 708 ntTSL 5 BASIC2.94□□□□□ -1.94
CCDC54Q8NEL0 SUB1-203ENST00000502897 562 ntAPPRIS P1 TSL 4 BASIC2.94□□□□□ -1.94
CCDC54Q8NEL0 AC114967.1-201ENST00000504890 259 ntBASIC2.94□□□□□ -1.94
CCDC54Q8NEL0 LINC01957-201ENST00000506392 751 ntTSL 1 (best) BASIC2.94□□□□□ -1.94
CCDC54Q8NEL0 AC096734.1-201ENST00000511279 1128 ntTSL 1 (best) BASIC2.94□□□□□ -1.94
CCDC54Q8NEL0 AC092542.1-201ENST00000513155 355 ntTSL 2 BASIC2.94□□□□□ -1.94
CCDC54Q8NEL0 AC107463.1-202ENST00000514526 689 ntTSL 2 BASIC2.94□□□□□ -1.94
CCDC54Q8NEL0 AC010255.3-204ENST00000514637 454 ntTSL 2 BASIC2.94□□□□□ -1.94
CCDC54Q8NEL0 TET2-AS1-201ENST00000515414 537 ntTSL 5 BASIC2.94□□□□□ -1.94
Retrieved 100 of 98,524 protein–RNA pairs in 77.2 ms