Protein–RNA interactions for Protein: Q8IX90

SKA3, Spindle and kinetochore-associated protein 3, humanhuman

Predictions only

Length 412 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3Q8IX90 ROCK1P1-203ENST00000608049 2457 ntTSL 1 (best) BASIC3.13□□□□□ -1.91
SKA3Q8IX90 FAM214A-216ENST00000619572 3548 ntAPPRIS P1 TSL 1 (best) BASIC3.13□□□□□ -1.91
SKA3Q8IX90 MTCO1P24-201ENST00000515438 1558 ntBASIC3.12□□□□□ -1.91
SKA3Q8IX90 FBXL13-204ENST00000436908 2577 ntTSL 5 BASIC3.12□□□□□ -1.91
SKA3Q8IX90 SAGE4P-201ENST00000442271 3381 ntBASIC3.12□□□□□ -1.91
SKA3Q8IX90 MBNL1-206ENST00000357472 5256 ntTSL 5 BASIC3.12□□□□□ -1.91
SKA3Q8IX90 CCDC54-201ENST00000261058 1444 ntAPPRIS P1 BASIC3.12□□□□□ -1.91
SKA3Q8IX90 THOC1-219ENST00000616322 2078 ntAPPRIS ALT1 TSL 5 BASIC3.12□□□□□ -1.91
SKA3Q8IX90 OR9K2-202ENST00000641329 3120 ntAPPRIS P1 BASIC3.12□□□□□ -1.91
SKA3Q8IX90 MBNL3-205ENST00000370857 8760 ntTSL 5 BASIC3.12□□□□□ -1.91
SKA3Q8IX90 RNU4-51P-201ENST00000364206 140 ntBASIC3.12□□□□□ -1.91
SKA3Q8IX90 U3.39-201ENST00000408569 239 ntBASIC3.12□□□□□ -1.91
SKA3Q8IX90 BOLA3P4-201ENST00000418151 400 ntBASIC3.12□□□□□ -1.91
SKA3Q8IX90 DBIP2-201ENST00000419076 262 ntBASIC3.12□□□□□ -1.91
SKA3Q8IX90 AL353771.1-201ENST00000422107 457 ntTSL 3 BASIC3.12□□□□□ -1.91
SKA3Q8IX90 AC005517.2-201ENST00000424673 553 ntBASIC3.12□□□□□ -1.91
SKA3Q8IX90 AC024619.1-202ENST00000426489 495 ntTSL 3 BASIC3.12□□□□□ -1.91
SKA3Q8IX90 AC005345.1-201ENST00000431868 217 ntBASIC3.12□□□□□ -1.91
SKA3Q8IX90 GOT2P5-201ENST00000433995 546 ntBASIC3.12□□□□□ -1.91
SKA3Q8IX90 AP000477.1-202ENST00000434859 847 ntTSL 3 BASIC3.12□□□□□ -1.91
SKA3Q8IX90 RPL23AP22-201ENST00000437556 453 ntBASIC3.12□□□□□ -1.91
SKA3Q8IX90 AL358794.1-201ENST00000445689 381 ntBASIC3.12□□□□□ -1.91
SKA3Q8IX90 AC079776.3-201ENST00000450665 370 ntBASIC3.12□□□□□ -1.91
SKA3Q8IX90 LINC01075-201ENST00000455977 370 ntTSL 3 BASIC3.12□□□□□ -1.91
SKA3Q8IX90 SNORD105B-201ENST00000458770 79 ntBASIC3.12□□□□□ -1.91
SKA3Q8IX90 VPS26AP1-201ENST00000483197 979 ntBASIC3.12□□□□□ -1.91
SKA3Q8IX90 AC106707.2-201ENST00000484182 374 ntBASIC3.12□□□□□ -1.91
SKA3Q8IX90 ACTG1P13-201ENST00000486987 1043 ntBASIC3.12□□□□□ -1.91
SKA3Q8IX90 RPS3AP50-201ENST00000487064 803 ntBASIC3.12□□□□□ -1.91
SKA3Q8IX90 AC113420.1-201ENST00000507903 571 ntBASIC3.12□□□□□ -1.91
SKA3Q8IX90 RNU4-60P-201ENST00000517239 135 ntBASIC3.12□□□□□ -1.91
SKA3Q8IX90 AL163973.2-201ENST00000548096 288 ntTSL 3 BASIC3.12□□□□□ -1.91
SKA3Q8IX90 AC010198.2-201ENST00000550612 259 ntBASIC3.12□□□□□ -1.91
SKA3Q8IX90 LINC00519-201ENST00000557518 682 ntTSL 2 BASIC3.12□□□□□ -1.91
SKA3Q8IX90 LINC02164-201ENST00000566684 272 ntTSL 3 BASIC3.12□□□□□ -1.91
SKA3Q8IX90 AC105094.2-203ENST00000590357 555 ntTSL 4 BASIC3.12□□□□□ -1.91
SKA3Q8IX90 AC020914.6-201ENST00000594327 272 ntBASIC3.12□□□□□ -1.91
SKA3Q8IX90 LINC00907-211ENST00000601948 795 ntTSL 5 BASIC3.12□□□□□ -1.91
SKA3Q8IX90 AC025588.3-201ENST00000604182 274 ntBASIC3.12□□□□□ -1.91
SKA3Q8IX90 AL009028.1-201ENST00000604895 802 ntBASIC3.12□□□□□ -1.91
SKA3Q8IX90 AC092636.1-201ENST00000608609 415 ntTSL 2 BASIC3.12□□□□□ -1.91
SKA3Q8IX90 LINC02098-202ENST00000609260 554 ntTSL 3 BASIC3.12□□□□□ -1.91
SKA3Q8IX90 ADPRM-204ENST00000609540 1138 ntTSL 5 BASIC3.12□□□□□ -1.91
SKA3Q8IX90 PLCE1-AS2-213ENST00000620469 432 ntTSL 5 BASIC3.12□□□□□ -1.91
SKA3Q8IX90 AL157770.1-201ENST00000623049 439 ntBASIC3.12□□□□□ -1.91
SKA3Q8IX90 AP003355.3-201ENST00000623465 114 ntBASIC3.12□□□□□ -1.91
SKA3Q8IX90 TEX41-280ENST00000629185 591 ntTSL 5 BASIC3.12□□□□□ -1.91
SKA3Q8IX90 SATB1-AS1-266ENST00000630271 813 ntTSL 5 BASIC3.12□□□□□ -1.91
SKA3Q8IX90 AL034408.1-202ENST00000636088 415 ntBASIC3.12□□□□□ -1.91
SKA3Q8IX90 KNTC1-205ENST00000450485 3655 ntTSL 2 BASIC3.12□□□□□ -1.91
SKA3Q8IX90 TET2-204ENST00000413648 4973 ntTSL 1 (best) BASIC3.12□□□□□ -1.91
SKA3Q8IX90 AL355578.1-201ENST00000607405 1328 ntBASIC3.12□□□□□ -1.91
SKA3Q8IX90 DBF4P1-201ENST00000412976 1892 ntBASIC3.11□□□□□ -1.91
SKA3Q8IX90 CHM-205ENST00000615443 2821 ntTSL 1 (best) BASIC3.11□□□□□ -1.91
SKA3Q8IX90 CCDC68-201ENST00000337363 1457 ntAPPRIS P1 TSL 2 BASIC3.11□□□□□ -1.91
SKA3Q8IX90 Z99496.1-201ENST00000469424 1477 ntBASIC3.11□□□□□ -1.91
SKA3Q8IX90 AP005901.5-201ENST00000545779 1796 ntBASIC3.11□□□□□ -1.91
SKA3Q8IX90 RNA5SP235-201ENST00000365411 114 ntBASIC3.11□□□□□ -1.91
SKA3Q8IX90 AP002088.1-201ENST00000382740 395 ntBASIC3.11□□□□□ -1.91
SKA3Q8IX90 SNORD65.1-201ENST00000390889 71 ntBASIC3.11□□□□□ -1.91
SKA3Q8IX90 AL023807.1-201ENST00000407932 359 ntBASIC3.11□□□□□ -1.91
SKA3Q8IX90 LINC00894-201ENST00000413076 403 ntTSL 3 BASIC3.11□□□□□ -1.91
SKA3Q8IX90 AC097717.1-228ENST00000417006 754 ntTSL 3 BASIC3.11□□□□□ -1.91
SKA3Q8IX90 GRM7-AS1-201ENST00000420230 430 ntTSL 3 BASIC3.11□□□□□ -1.91
SKA3Q8IX90 GNGT1-202ENST00000428834 731 ntTSL 3 BASIC3.11□□□□□ -1.91
SKA3Q8IX90 BX679664.1-201ENST00000434429 253 ntBASIC3.11□□□□□ -1.91
SKA3Q8IX90 AL589935.1-218ENST00000434683 529 ntTSL 3 BASIC3.11□□□□□ -1.91
SKA3Q8IX90 HSD52-202ENST00000436225 772 ntTSL 3 BASIC3.11□□□□□ -1.91
SKA3Q8IX90 LINC00411-201ENST00000436722 461 ntTSL 3 BASIC3.11□□□□□ -1.91
SKA3Q8IX90 AL591721.1-201ENST00000439849 751 ntTSL 3 BASIC3.11□□□□□ -1.91
SKA3Q8IX90 NPM1P49-201ENST00000448027 714 ntBASIC3.11□□□□□ -1.91
SKA3Q8IX90 AC002383.1-201ENST00000448260 671 ntTSL 5 BASIC3.11□□□□□ -1.91
SKA3Q8IX90 AL442647.1-201ENST00000449485 481 ntTSL 5 BASIC3.11□□□□□ -1.91
SKA3Q8IX90 AC104073.1-201ENST00000451988 151 ntBASIC3.11□□□□□ -1.91
SKA3Q8IX90 NDUFAF4P3-201ENST00000456468 525 ntBASIC3.11□□□□□ -1.91
SKA3Q8IX90 RPL7P15-201ENST00000461190 712 ntBASIC3.11□□□□□ -1.91
SKA3Q8IX90 FTH1P2-201ENST00000466086 412 ntBASIC3.11□□□□□ -1.91
SKA3Q8IX90 BOLA3P3-201ENST00000505182 232 ntBASIC3.11□□□□□ -1.91
SKA3Q8IX90 AC100773.1-201ENST00000505409 520 ntTSL 5 BASIC3.11□□□□□ -1.91
SKA3Q8IX90 AC005921.1-201ENST00000510589 286 ntBASIC3.11□□□□□ -1.91
SKA3Q8IX90 AC010265.1-201ENST00000513509 211 ntBASIC3.11□□□□□ -1.91
SKA3Q8IX90 AC012625.1-201ENST00000515153 625 ntTSL 5 BASIC3.11□□□□□ -1.91
SKA3Q8IX90 SNORA48.10-201ENST00000516965 160 ntBASIC3.11□□□□□ -1.91
SKA3Q8IX90 AC015468.3-201ENST00000518967 417 ntTSL 2 BASIC3.11□□□□□ -1.91
SKA3Q8IX90 LINC01932-201ENST00000520323 573 ntTSL 5 BASIC3.11□□□□□ -1.91
SKA3Q8IX90 AC068657.1-201ENST00000520807 306 ntBASIC3.11□□□□□ -1.91
SKA3Q8IX90 ARL2BPP5-201ENST00000523141 481 ntBASIC3.11□□□□□ -1.91
SKA3Q8IX90 AP000926.4-201ENST00000527351 454 ntBASIC3.11□□□□□ -1.91
SKA3Q8IX90 AL353699.1-201ENST00000529078 365 ntTSL 3 BASIC3.11□□□□□ -1.91
SKA3Q8IX90 OR4A45P-201ENST00000529954 901 ntBASIC3.11□□□□□ -1.91
SKA3Q8IX90 AP001317.1-201ENST00000531194 960 ntBASIC3.11□□□□□ -1.91
SKA3Q8IX90 AL354920.1-202ENST00000531661 1017 ntTSL 1 (best) BASIC3.11□□□□□ -1.91
SKA3Q8IX90 AC063947.1-201ENST00000549036 557 ntTSL 4 BASIC3.11□□□□□ -1.91
SKA3Q8IX90 EGLN3-AS1-201ENST00000555922 308 ntTSL 3 BASIC3.11□□□□□ -1.91
SKA3Q8IX90 OR4H12P-201ENST00000556269 907 ntBASIC3.11□□□□□ -1.91
SKA3Q8IX90 LINC02345-201ENST00000557883 766 ntTSL 3 BASIC3.11□□□□□ -1.91
SKA3Q8IX90 AC005412.1-201ENST00000580812 1049 ntBASIC3.11□□□□□ -1.91
SKA3Q8IX90 AC006116.10-201ENST00000591836 581 ntBASIC3.11□□□□□ -1.91
SKA3Q8IX90 AC011458.1-201ENST00000604034 617 ntBASIC3.11□□□□□ -1.91
SKA3Q8IX90 AL365400.2-201ENST00000605604 902 ntBASIC3.11□□□□□ -1.91
Retrieved 100 of 98,524 protein–RNA pairs in 138.7 ms