Protein–RNA interactions for Protein: Q6ZNE9

RUFY4, RUN and FYVE domain-containing protein 4, humanhuman

Predictions only

Length 571 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RUFY4Q6ZNE9 PPP3CB-AS1-206ENST00000595935 675 ntTSL 5 BASIC5.51□□□□□ -1.53
RUFY4Q6ZNE9 AL117336.2-201ENST00000602435 335 ntBASIC5.51□□□□□ -1.53
RUFY4Q6ZNE9 AC055876.5-201ENST00000605667 259 ntBASIC5.51□□□□□ -1.53
RUFY4Q6ZNE9 AP001521.2-201ENST00000608772 546 ntBASIC5.51□□□□□ -1.53
RUFY4Q6ZNE9 AC009161.2-201ENST00000624626 138 ntBASIC5.51□□□□□ -1.53
RUFY4Q6ZNE9 MLIP-213ENST00000514921 5743 ntAPPRIS ALT2 TSL 1 (best) BASIC5.51□□□□□ -1.53
RUFY4Q6ZNE9 WDR63-203ENST00000370596 2905 ntAPPRIS ALT2 TSL 5 BASIC5.51□□□□□ -1.53
RUFY4Q6ZNE9 ZNF681-201ENST00000402377 6497 ntAPPRIS P1 TSL 1 (best) BASIC5.51□□□□□ -1.53
RUFY4Q6ZNE9 PCDH15-209ENST00000395433 6942 ntTSL 5 BASIC5.51□□□□□ -1.53
RUFY4Q6ZNE9 MYB-213ENST00000525369 2866 ntTSL 1 (best) BASIC5.51□□□□□ -1.53
RUFY4Q6ZNE9 C1D-201ENST00000355848 2233 ntAPPRIS P1 TSL 1 (best) BASIC5.51□□□□□ -1.53
RUFY4Q6ZNE9 NUP58P1-201ENST00000502546 1738 ntBASIC5.51□□□□□ -1.53
RUFY4Q6ZNE9 UGT2A1-203ENST00000503640 2595 ntAPPRIS P1 TSL 1 (best) BASIC5.51□□□□□ -1.53
RUFY4Q6ZNE9 FOXP2-226ENST00000635638 2598 ntAPPRIS ALT1 TSL 5 BASIC5.51□□□□□ -1.53
RUFY4Q6ZNE9 IPO5-201ENST00000261574 6003 ntTSL 1 (best) BASIC5.5□□□□□ -1.53
RUFY4Q6ZNE9 STAU2-220ENST00000522695 2646 ntAPPRIS ALT1 TSL 1 (best) BASIC5.5□□□□□ -1.53
RUFY4Q6ZNE9 LINC01197-202ENST00000555332 3568 ntTSL 3 BASIC5.5□□□□□ -1.53
RUFY4Q6ZNE9 OR2L3-202ENST00000641161 2830 ntAPPRIS P1 BASIC5.5□□□□□ -1.53
RUFY4Q6ZNE9 OR2L3-203ENST00000641649 2846 ntAPPRIS P1 BASIC5.5□□□□□ -1.53
RUFY4Q6ZNE9 EIF4EBP2-201ENST00000373218 7257 ntAPPRIS P1 TSL 1 (best) BASIC5.5□□□□□ -1.53
RUFY4Q6ZNE9 CEP97-201ENST00000341893 8361 ntAPPRIS P3 TSL 1 (best) BASIC5.5□□□□□ -1.53
RUFY4Q6ZNE9 RNA5SP258-201ENST00000362750 119 ntBASIC5.5□□□□□ -1.53
RUFY4Q6ZNE9 RNU6-1120P-201ENST00000362988 108 ntBASIC5.5□□□□□ -1.53
RUFY4Q6ZNE9 SNORD56.2-201ENST00000363242 71 ntBASIC5.5□□□□□ -1.53
RUFY4Q6ZNE9 RNU4-76P-201ENST00000364509 141 ntBASIC5.5□□□□□ -1.53
RUFY4Q6ZNE9 TMLHE-202ENST00000369439 1248 ntTSL 1 (best) BASIC5.5□□□□□ -1.53
RUFY4Q6ZNE9 C9orf92-201ENST00000380683 359 ntAPPRIS P2 TSL 3 BASIC5.5□□□□□ -1.53
RUFY4Q6ZNE9 RPS4XP8-201ENST00000402039 771 ntBASIC5.5□□□□□ -1.53
RUFY4Q6ZNE9 RNU6-908P-201ENST00000410160 94 ntBASIC5.5□□□□□ -1.53
RUFY4Q6ZNE9 AC005162.2-201ENST00000411479 578 ntTSL 4 BASIC5.5□□□□□ -1.53
RUFY4Q6ZNE9 JKAMPP1-201ENST00000413804 919 ntBASIC5.5□□□□□ -1.53
RUFY4Q6ZNE9 AC023347.1-202ENST00000419223 440 ntTSL 5 BASIC5.5□□□□□ -1.53
RUFY4Q6ZNE9 AL358176.3-201ENST00000420757 454 ntBASIC5.5□□□□□ -1.53
RUFY4Q6ZNE9 IGKV1OR9-1-201ENST00000424370 284 ntBASIC5.5□□□□□ -1.53
RUFY4Q6ZNE9 AF230666.1-201ENST00000429151 786 ntTSL 2 BASIC5.5□□□□□ -1.53
RUFY4Q6ZNE9 AC008067.1-203ENST00000430876 359 ntTSL 3 BASIC5.5□□□□□ -1.53
RUFY4Q6ZNE9 AL591721.1-201ENST00000439849 751 ntTSL 3 BASIC5.5□□□□□ -1.53
RUFY4Q6ZNE9 LINC01317-202ENST00000442026 677 ntTSL 3 BASIC5.5□□□□□ -1.53
RUFY4Q6ZNE9 AC122136.1-201ENST00000443971 478 ntTSL 3 BASIC5.5□□□□□ -1.53
RUFY4Q6ZNE9 MYCBP2-AS1-203ENST00000450627 349 ntTSL 3 BASIC5.5□□□□□ -1.53
RUFY4Q6ZNE9 SNRPGP6-201ENST00000451124 220 ntBASIC5.5□□□□□ -1.53
RUFY4Q6ZNE9 BX842559.2-201ENST00000451418 605 ntBASIC5.5□□□□□ -1.53
RUFY4Q6ZNE9 AC010733.1-201ENST00000451515 401 ntBASIC5.5□□□□□ -1.53
RUFY4Q6ZNE9 RPL23AP56-201ENST00000460778 453 ntBASIC5.5□□□□□ -1.53
RUFY4Q6ZNE9 AC083798.1-201ENST00000472671 131 ntBASIC5.5□□□□□ -1.53
RUFY4Q6ZNE9 AL136126.1-201ENST00000473603 402 ntBASIC5.5□□□□□ -1.53
RUFY4Q6ZNE9 AC018710.1-201ENST00000506509 158 ntBASIC5.5□□□□□ -1.53
RUFY4Q6ZNE9 RNU4ATAC10P-201ENST00000516967 122 ntBASIC5.5□□□□□ -1.53
RUFY4Q6ZNE9 AP001085.1-201ENST00000524441 639 ntTSL 2 BASIC5.5□□□□□ -1.53
RUFY4Q6ZNE9 AC068205.1-204ENST00000532989 481 ntTSL 3 BASIC5.5□□□□□ -1.53
RUFY4Q6ZNE9 RAB11AP2-201ENST00000545905 639 ntBASIC5.5□□□□□ -1.53
RUFY4Q6ZNE9 AL355096.1-201ENST00000553561 447 ntTSL 3 BASIC5.5□□□□□ -1.53
RUFY4Q6ZNE9 MIR3167-201ENST00000579623 85 ntBASIC5.5□□□□□ -1.53
RUFY4Q6ZNE9 AC015908.2-202ENST00000585243 756 ntTSL 3 BASIC5.5□□□□□ -1.53
RUFY4Q6ZNE9 RPL27-207ENST00000590864 569 ntTSL 2 BASIC5.5□□□□□ -1.53
RUFY4Q6ZNE9 AC068790.4-201ENST00000602474 263 ntBASIC5.5□□□□□ -1.53
RUFY4Q6ZNE9 AL391358.1-201ENST00000605342 190 ntBASIC5.5□□□□□ -1.53
RUFY4Q6ZNE9 AC087045.1-201ENST00000605856 382 ntBASIC5.5□□□□□ -1.53
RUFY4Q6ZNE9 PRKCQ-AS1-207ENST00000607996 531 ntTSL 5 BASIC5.5□□□□□ -1.53
RUFY4Q6ZNE9 MIR6780A-201ENST00000615089 68 ntBASIC5.5□□□□□ -1.53
RUFY4Q6ZNE9 AC091953.2-201ENST00000623979 160 ntBASIC5.5□□□□□ -1.53
RUFY4Q6ZNE9 MATR3-228ENST00000620916 3134 ntTSL 5 BASIC5.5□□□□□ -1.53
RUFY4Q6ZNE9 LINC01933-204ENST00000524295 3591 ntTSL 2 BASIC5.5□□□□□ -1.53
RUFY4Q6ZNE9 OFD1P9Y-201ENST00000417699 1491 ntBASIC5.5□□□□□ -1.53
RUFY4Q6ZNE9 PPIG-201ENST00000260970 6368 ntAPPRIS P1 TSL 1 (best) BASIC5.5□□□□□ -1.53
RUFY4Q6ZNE9 SLC1A3-216ENST00000613445 4030 ntTSL 5 BASIC5.5□□□□□ -1.53
RUFY4Q6ZNE9 DDHD2-202ENST00000517385 4113 ntTSL 2 BASIC5.5□□□□□ -1.53
RUFY4Q6ZNE9 AC010300.1-201ENST00000600671 5134 ntBASIC5.5□□□□□ -1.53
RUFY4Q6ZNE9 Z95327.2-201ENST00000414579 1873 ntBASIC5.49□□□□□ -1.53
RUFY4Q6ZNE9 ARHGEF12-202ENST00000397843 9660 ntAPPRIS P1 TSL 1 (best) BASIC5.49□□□□□ -1.53
RUFY4Q6ZNE9 TBC1D23-201ENST00000344949 3656 ntAPPRIS P1 TSL 1 (best) BASIC5.49□□□□□ -1.53
RUFY4Q6ZNE9 NXT2-201ENST00000218004 2692 ntTSL 1 (best) BASIC5.49□□□□□ -1.53
RUFY4Q6ZNE9 SYT14-206ENST00000537238 5208 ntAPPRIS ALT2 TSL 5 BASIC5.49□□□□□ -1.53
RUFY4Q6ZNE9 PPEF1-202ENST00000361511 2890 ntAPPRIS P1 TSL 1 (best) BASIC5.49□□□□□ -1.53
RUFY4Q6ZNE9 AC079741.1-201ENST00000321498 212 ntBASIC5.49□□□□□ -1.53
RUFY4Q6ZNE9 OR51F2-201ENST00000322110 993 ntAPPRIS ALT2 BASIC5.49□□□□□ -1.53
RUFY4Q6ZNE9 RNU6-1097P-201ENST00000363586 107 ntBASIC5.49□□□□□ -1.53
RUFY4Q6ZNE9 RNU4-1-201ENST00000363925 141 ntBASIC5.49□□□□□ -1.53
RUFY4Q6ZNE9 RNY1P12-201ENST00000364251 105 ntBASIC5.49□□□□□ -1.53
RUFY4Q6ZNE9 RNU6-108P-201ENST00000365558 107 ntBASIC5.49□□□□□ -1.53
RUFY4Q6ZNE9 SNORA20.2-201ENST00000383922 131 ntBASIC5.49□□□□□ -1.53
RUFY4Q6ZNE9 TRAV12-2-201ENST00000390437 445 ntAPPRIS P1 BASIC5.49□□□□□ -1.53
RUFY4Q6ZNE9 AL359643.1-201ENST00000404109 423 ntBASIC5.49□□□□□ -1.53
RUFY4Q6ZNE9 RPS16P5-201ENST00000406501 404 ntBASIC5.49□□□□□ -1.53
RUFY4Q6ZNE9 AL356776.1-201ENST00000406574 447 ntBASIC5.49□□□□□ -1.53
RUFY4Q6ZNE9 AC069213.2-201ENST00000420238 366 ntBASIC5.49□□□□□ -1.53
RUFY4Q6ZNE9 AL353193.1-201ENST00000421444 268 ntBASIC5.49□□□□□ -1.53
RUFY4Q6ZNE9 AL513185.2-201ENST00000425543 193 ntBASIC5.49□□□□□ -1.53
RUFY4Q6ZNE9 OR2AH1P-201ENST00000425717 928 ntBASIC5.49□□□□□ -1.53
RUFY4Q6ZNE9 AC137499.1-201ENST00000427602 88 ntBASIC5.49□□□□□ -1.53
RUFY4Q6ZNE9 AC119618.1-201ENST00000434191 222 ntBASIC5.49□□□□□ -1.53
RUFY4Q6ZNE9 TPT1P12-201ENST00000448968 492 ntBASIC5.49□□□□□ -1.53
RUFY4Q6ZNE9 AL354771.1-201ENST00000452178 602 ntTSL 5 BASIC5.49□□□□□ -1.53
RUFY4Q6ZNE9 AL513533.1-201ENST00000453728 415 ntBASIC5.49□□□□□ -1.53
RUFY4Q6ZNE9 AMD1P1-201ENST00000457220 922 ntBASIC5.49□□□□□ -1.53
RUFY4Q6ZNE9 AC022364.2-201ENST00000457963 554 ntBASIC5.49□□□□□ -1.53
RUFY4Q6ZNE9 AC091180.1-201ENST00000462104 372 ntBASIC5.49□□□□□ -1.53
RUFY4Q6ZNE9 AC010683.1-201ENST00000473673 378 ntBASIC5.49□□□□□ -1.53
RUFY4Q6ZNE9 MTND3P22-201ENST00000510932 243 ntBASIC5.49□□□□□ -1.53
RUFY4Q6ZNE9 LRRC34P2-201ENST00000514850 553 ntBASIC5.49□□□□□ -1.53
Retrieved 100 of 98,524 protein–RNA pairs in 166 ms